Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008717

Physical Location & Seq

Genomic Coordinates Forward (+)

23355003 .. 23357934

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G020130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGAGAGCTCCGCGATTCAAACGAGTCGCCGCTAAAACCCCCAAGCGGCCAACACTCTCAAACCGACCCAGCGATGACGACGACGGCGACGAAACTCCGCCGAGTCAACCCCAACCCGACTCAACTCCAATCCCAGAGATTCCTGCGGATAAAATGACCATCTTGCCCTACACATTCTTCCAGATTGACGCCCTAGACCTCGCCCCGCGTTTGCTCGGCAAGTTCCTTAGGAGAGACGACGTTGTTCTTCAGATTACCGAGGTAGAAGCTTATAGACCAAATGATTCGGCCTGTCACGGTCGATTTGGCATAACACCAAGAACAGCCCCTGTTTTTGGACCAGGAGGGCATGCTTATGTTTATCTTTGCTATGGTCTTCATTCGATGCTGAATGTTGTTGCTGACAAGGAGGGAGTCGGGGCGGCTGTTCTAATACGTGCTTGCGCTCCAATTAGGGGATTGGAGACCATACAGCAACGTCGAGGGCAGAAGACTAGTAAGCCTGTTCTCCTTAGTGGGCCAGGAAAGATCGGTCAAGCCCTGGGACTTTCTACAGAATGGTCTAACCACCCCCTCTACACTCCTGGTGGTCTGGAAATCTTAGATGGTCCCCCGCCTGAGAACATGTTGATTGGTCCGCGTGTAGGCATCAACTATGCTTTGCCTGAGCACGTCAATGCGTTGTGGAGATTTGCAATTGCAGGTACCCCTTGGATAAGTGCTCCGAAGAACACTCTCCGGTCACCGTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003905 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Pur_DNA_glyco

Protein Analysis

252

Amino Acids

27.43

Weight (kDa)

9.15

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_DNA_glyco	PF02245	60 - 237	6.5e-53	Methylpurine-DNA glycosylase (MPG)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12040 AT3G12040
fragaria_vesca	FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980 FvH4_6g21980
malus_domestica	MD14G1054600.v1.1
prunus_persica	Prupe.7G080200_v2.0.a1 Prupe.7G080200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479281
rosa_laevigata	RLG00000023587
rosa_multiflora	Rmu_sc0002978.1_g000001 Rmu_sc0015378.1_g000001 Rmu_sc0024699.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402440
rosa_rugosa	Rorug03G0174100
rosa_samantha	Rh3AG225100 Rh3BG257600 Rh3CG253300 Rh3DG249500
rosa_wichuraiana	Rw3G020130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	695
Acc65I	GGTACC	1 cut(s)	707
AccB1I	GGYRCC	1 cut(s)	707
AccII	CGCG	3 cut(s)	16, 211, 643
AciI	CCGC	9 cut(s)	14, 33, 49, 101, 149, 209, 425, 617, 641
AcoI	YGGCCR	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	4 cut(s)	48, 338, 458, 647
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	1 cut(s)	22
AhlI	ACTAGT	1 cut(s)	497
AjiI	CACGTC	1 cut(s)	676
AjnI	CCWGG	4 cut(s)	343, 523, 543, 586
AluBI	AGCT	2 cut(s)	11, 272
AluI	AGCT	2 cut(s)	11, 272
Alw21I	GWGCWC	3 cut(s)	13, 675, 727
Alw26I	GTCTC	2 cut(s)	231, 461
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	50, 291, 521
Asp718I	GGTACC	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	4 cut(s)	341, 521, 611, 638
AsuHPI	GGTGA	1 cut(s)	738
AvaII	GGWCC	3 cut(s)	341, 611, 638
AxyI	CCTNAGG	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	707
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	2 cut(s)	371, 500
Bbv12I	GWGCWC	3 cut(s)	13, 675, 727
BccI	CCATC	2 cut(s)	170, 602
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	4 cut(s)	345, 525, 545, 588
BcoDI	GTCTC	2 cut(s)	231, 461
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	2 cut(s)	197, 498
BfmI	CTRYAG	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	695
BisI	GCNGC	3 cut(s)	33, 50, 426
BlsI	GCNGC	3 cut(s)	34, 51, 427
Bme1390I	CCNGG	4 cut(s)	345, 525, 545, 588
Bme18I	GGWCC	3 cut(s)	341, 611, 638
BmgBI	CACGTC	1 cut(s)	676
BmgT120I	GGNCC	4 cut(s)	341, 521, 611, 638
BmiI	GGNNCC	2 cut(s)	613, 709
BmrFI	CCNGG	4 cut(s)	345, 525, 545, 588
BmsI	GCATC	2 cut(s)	378, 660
BpiI	GAAGAC	2 cut(s)	371, 500
Bpu10I	CCTNAGC	1 cut(s)	669
BsaAI	YACGTR	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	4 cut(s)	261, 543, 544, 713
BsaWI	WCCGGW	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 338, 458, 647
Bse21I	CCTNAGG	1 cut(s)	230
BseBI	CCWGG	4 cut(s)	345, 525, 545, 588
BseDI	CCNNGG	4 cut(s)	261, 543, 544, 713
BseLI	CCNNNNNNNGG	4 cut(s)	48, 338, 458, 647
BseMII	CTCAG	2 cut(s)	612, 660
BseYI	CCCAGC	1 cut(s)	71
Bsh1236I	CGCG	3 cut(s)	16, 211, 643
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	3 cut(s)	52, 293, 523
BshNI	GGYRCC	1 cut(s)	707
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	3 cut(s)	13, 675, 727
BsiSI	CCGG	1 cut(s)	742
BslFI	GGGAC	2 cut(s)	561, 597
BslI	CCNNNNNNNGG	4 cut(s)	48, 338, 458, 647
BsmAI	GTCTC	2 cut(s)	231, 461
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	561, 597
BsnI	GGCC	3 cut(s)	52, 293, 523
Bso31I	GGTCTC	1 cut(s)	461
Bsp1286I	GDGCHC	3 cut(s)	13, 675, 727
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	9 cut(s)	14, 33, 49, 101, 149, 209, 425, 617, 641
BspANI	GGCC	3 cut(s)	52, 293, 523
BspCNI	CTCAG	2 cut(s)	613, 661
BspFNI	CGCG	3 cut(s)	16, 211, 643
BspLI	GGNNCC	2 cut(s)	613, 709
BspMI	ACCTGC	1 cut(s)	695
BspT107I	GGYRCC	1 cut(s)	707
BspTNI	GGTCTC	1 cut(s)	461
BssECI	CCNNGG	4 cut(s)	261, 543, 544, 713
BssMI	GATC	1 cut(s)	531
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	713
Bst2UI	CCWGG	4 cut(s)	345, 525, 545, 588
Bst4CI	ACNGT	2 cut(s)	302, 750
BstACI	GRCGYC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	2 cut(s)	354, 445
BstDEI	CTNAG	6 cut(s)	230, 515, 604, 621, 669, 756
BstEII	GGTNACC	1 cut(s)	744
BstFNI	CGCG	3 cut(s)	16, 211, 643
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	2 cut(s)	231, 461
BstMBI	GATC	1 cut(s)	531
BstMCI	CGRYCG	1 cut(s)	304
BstNI	CCWGG	4 cut(s)	345, 525, 545, 588
BstNSI	RCATGY	2 cut(s)	356, 631
BstPI	GGTNACC	1 cut(s)	744
BstSCI	CCNGG	4 cut(s)	343, 523, 543, 586
BstSFI	CTRYAG	1 cut(s)	555
BstUI	CGCG	3 cut(s)	16, 211, 643
BstV2I	GAAGAC	2 cut(s)	371, 500
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	3 cut(s)	52, 293, 523
BtgZI	GCGATG	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	695
Cac8I	GCNNGC	2 cut(s)	354, 445
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	4 cut(s)	341, 521, 611, 638
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	708
CviAII	CATG	2 cut(s)	353, 628
CviJI	RGCY	9 cut(s)	11, 52, 272, 293, 329, 428, 505, 523, 542
CviKI_1	RGCY	9 cut(s)	11, 52, 272, 293, 329, 428, 505, 523, 542
CviQI	GTAC	1 cut(s)	708
DdeI	CTNAG	6 cut(s)	230, 515, 604, 621, 669, 756
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	713
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	461
Eco47I	GGWCC	3 cut(s)	341, 611, 638
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	744
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	744
EcoRII	CCWGG	4 cut(s)	343, 523, 543, 586
EcoT14I	CCWWGG	1 cut(s)	713
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	713
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	2 cut(s)	356, 631
FaiI	YATR	8 cut(s)	276, 314, 354, 360, 375, 473, 629, 660
FaqI	GGGAC	2 cut(s)	561, 597
FatI	CATG	2 cut(s)	352, 627
FauI	CCCGC	2 cut(s)	216, 624
Fnu4HI	GCNGC	3 cut(s)	33, 50, 426
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	33, 50, 426
FspBI	CTAG	2 cut(s)	197, 498
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	3 cut(s)	33, 50, 426
GsaI	CCCAGC	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	52, 293, 523
HapII	CCGG	1 cut(s)	742
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	356, 631
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	7 cut(s)	18, 27, 106, 122, 142, 287, 417
HpaII	CCGG	1 cut(s)	742
HphI	GGTGA	1 cut(s)	738
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	255, 729
Hpy188III	TCNNGA	2 cut(s)	184, 596
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	5 cut(s)	86, 89, 95, 245, 486
HpyCH4III	ACNGT	2 cut(s)	302, 750
HpyCH4IV	ACGT	4 cut(s)	243, 439, 481, 675
HpyCH4V	TGCA	2 cut(s)	698, 704
HpyF3I	CTNAG	6 cut(s)	230, 515, 604, 621, 669, 756
HpySE526I	ACGT	4 cut(s)	243, 439, 481, 675
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	356, 631
HspAI	GCGC	1 cut(s)	447
KpnI	GGTACC	1 cut(s)	711
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	3 cut(s)	16, 454, 730
LweI	GCATC	2 cut(s)	378, 660
MaeI	CTAG	2 cut(s)	197, 498
MaeII	ACGT	4 cut(s)	243, 439, 481, 675
MaeIII	GTNAC	2 cut(s)	296, 744
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MboII	GAAGA	6 cut(s)	16, 172, 242, 371, 505, 742
MfeI	CAATTG	1 cut(s)	699
MhlI	GDGCHC	3 cut(s)	13, 675, 727
MluCI	AATT	2 cut(s)	453, 699
MlyI	GAGTC	4 cut(s)	36, 115, 116, 426
MnlI	CCTC	6 cut(s)	212, 256, 341, 406, 479, 587
MslI	CAYNNNNRTG	2 cut(s)	357, 678
MspI	CCGG	1 cut(s)	742
MspR9I	CCNGG	4 cut(s)	345, 525, 545, 588
MunI	CAATTG	1 cut(s)	699
MvaI	CCWGG	4 cut(s)	345, 525, 545, 588
MvnI	CGCG	3 cut(s)	16, 211, 643
NdeII	GATC	1 cut(s)	531
NlaIII	CATG	2 cut(s)	356, 631
NlaIV	GGNNCC	2 cut(s)	613, 709
NmeAIII	GCCGAG	2 cut(s)	129, 198
NmuCI	GTSAC	2 cut(s)	296, 744
NspI	RCATGY	2 cut(s)	356, 631
PaeI	GCATGC	1 cut(s)	356
PasI	CCCWGGG	1 cut(s)	544
PciI	ACATGT	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 90
PfeI	GAWTC	3 cut(s)	18, 142, 287
PkrI	GCNGC	3 cut(s)	34, 51, 427
PleI	GAGTC	4 cut(s)	35, 114, 116, 425
PpsI	GAGTC	4 cut(s)	35, 114, 116, 425
Ppu21I	YACGTR	1 cut(s)	440
PscI	ACATGT	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	4 cut(s)	343, 523, 543, 586
PspEI	GGTNACC	1 cut(s)	744
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	4 cut(s)	343, 523, 543, 586
PspN4I	GGNNCC	2 cut(s)	613, 709
PspPI	GGNCC	4 cut(s)	341, 521, 611, 638
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
RseI	CAYNNNNRTG	2 cut(s)	357, 678
SacI	GAGCTC	1 cut(s)	13
SatI	GCNGC	3 cut(s)	33, 50, 426
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	4 cut(s)	341, 521, 611, 638
SchI	GAGTC	4 cut(s)	36, 115, 116, 426
ScrFI	CCNGG	4 cut(s)	345, 525, 545, 588
SduI	GDGCHC	3 cut(s)	13, 675, 727
SetI	ASST	9 cut(s)	13, 204, 246, 267, 274, 442, 484, 678, 709
SfaNI	GCATC	2 cut(s)	378, 660
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	3 cut(s)	341, 611, 638
SmiMI	CAYNNNNRTG	2 cut(s)	357, 678
SpeI	ACTAGT	1 cut(s)	497
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	2 cut(s)	453, 699
SsiI	CCGC	9 cut(s)	14, 33, 49, 101, 149, 209, 425, 617, 641
SspMI	CTAG	2 cut(s)	197, 498
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	4 cut(s)	343, 523, 543, 586
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	2 cut(s)	302, 750
TaiI	ACGT	4 cut(s)	246, 442, 484, 678
TaqI	TCGA	3 cut(s)	304, 386, 484
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	2 cut(s)	453, 699
TauI	GCSGC	3 cut(s)	35, 52, 428
TfiI	GAWTC	3 cut(s)	18, 142, 287
TseFI	GTSAC	2 cut(s)	296, 744
Tsp45I	GTSAC	2 cut(s)	296, 744
TspDTI	ATGAA	2 cut(s)	17, 371
VpaK11BI	GGWCC	3 cut(s)	341, 611, 638
XceI	RCATGY	2 cut(s)	356, 631
XspI	CTAG	2 cut(s)	197, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.