Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012059

Physical Location & Seq

Genomic Coordinates Reverse (-)

17877139 .. 17880039

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23772.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGTGTGCCAAGGTGGGAGCACCCGAACATCATCAAAGATATATTTACAATGGCTGAAAACACTGTTCTCGAGACCCATCTTCCCACTTTTCTCTCTCTGTCGTTTCTCTCATCACCCTCCTCTTCCTCACCGCAACCGCCTCGCCAGACGCCGCCTCCTCTACCACCATCGACGTCACCTATTCCATCTTTTCAAATTTCAATAATTCTAATTTCTCATCATGGCCGTGCCGTCGAACAAGTCCCTAATCGCGACTCGACCCGCCCCGAATTCCCGAAACTCCAAAATCGCCGACCCCCACCGGTGAAGCTTCACTGGAAACCCGTTCGGCAAGCCTTCGATTGTCACCTATTCAAGATTAACGCTTCTCCGAGGAAGAAGATCTTGTCCAAGGGAAACGAGCCGGATCAGACCTCTTCAGTGTCCAAGTTCAAAATGGAGGATTCCGATCAACATAGGGAGGTGGCCCCCACAACAACCTTTGGAATGGTTTCGAAGCCTCCAAAACCCGAAATCGGAGTTGAAGCGATGATGCCTCCGGAATGCCCTGAACCTGTCATAGCGCCGCTGGATGCAGACCCTTCTGCTCCTCCTCCGTATGATCCCAAGACCAATTACCTTTCTCCCAAGCCTCAATTTCTTCATTACAGTCCAAACCCAAGAGTTGAGTATTTTCTGAGTAAGGATGGTGAGGGCAAAAGGCTTGAGGAGGGTGATGAGAGAAACAACGAAAGAGAGAAAAGTGGGAACAGCGGTGCTGAGTTTGCGGTGGTGAGGGGAGAGGCCGGGGTGGAGGAGGAGCTTGGTGAAGGCCTCGTCGGTGGTGGGATCGGCGAGAAACTTCACAATAGTTTAGGGTTTGAAGAATCGGAGATGAACCAGAGGTGGAGTGTTCGAGGTGGCCTTGGTGGTTTCACTCTGAAGATCCAGGCGACCTTGTCGGGTGTTAAATGGAATTTCTCCTTTCATCCAGCTGAGTTGGCATTGAAAAATATGTCTAGTCAGCAAGTTGACGGCACGATTGGATGTCCACTTAACGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

38.38

Weight (kDa)

6.23

Isoelectric Point (pI)

60.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16630 AT2G16270
fragaria_vesca	FvH4_2g03070 FvH4_6g23772
prunus_persica	Prupe.8G151500_v2.0.a1 Prupe.8G151700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0247921
rosa_laevigata	RLG00000015172
rosa_multiflora	Rmu_co8497843.1_g000001 Rmu_sc0011977.1_g000002 Rmu_sc0017619.1_g000005
rosa_roxburghii	Rroxscaffold_180G00433180 Rroxscaffold_7G00213580
rosa_rugosa	Rorug05G0529500
rosa_samantha	Rh6AG044300 Rh6BG039100 Rh6CG037900 Rh6DG034900
rosa_wichuraiana	Rw6G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	541
AciI	CCGC	7 cut(s)	134, 140, 155, 265, 569, 756, 770
AclWI	GGATC	4 cut(s)	417, 599, 839, 922
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	3 cut(s)	198, 272, 958
AcuI	CTGAAG	2 cut(s)	405, 944
AcyI	GRCGYC	2 cut(s)	152, 176
AfiI	CCNNNNNNNGG	2 cut(s)	518, 1040
AgeI	ACCGGT	1 cut(s)	304
AgsI	TTSAA	7 cut(s)	197, 204, 358, 436, 527, 866, 991
AjnI	CCWGG	1 cut(s)	930
AluBI	AGCT	3 cut(s)	313, 805, 977
AluI	AGCT	3 cut(s)	313, 805, 977
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	4 cut(s)	417, 599, 839, 922
Ama87I	CYCGRG	1 cut(s)	71
Aor13HI	TCCGGA	1 cut(s)	541
AoxI	GGCC	5 cut(s)	226, 468, 786, 814, 904
ApoI	RAATTY	3 cut(s)	198, 272, 958
AsiGI	ACCGGT	1 cut(s)	304
Asp700I	GAANNNNTTC	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	790
AsuHPI	GGTGA	9 cut(s)	108, 123, 171, 319, 341, 704, 728, 787, 821
AsuII	TTCGAA	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	24
BccI	CCATC	4 cut(s)	87, 178, 196, 683
BceAI	ACGGC	3 cut(s)	213, 218, 1033
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	932
BcnI	CCSGG	1 cut(s)	790
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	1002
BfoI	RGCGCY	1 cut(s)	569
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	2 cut(s)	155, 569
BlsI	GCNGC	2 cut(s)	156, 570
Bme1390I	CCNGG	2 cut(s)	790, 932
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	2 cut(s)	790, 932
BmsI	GCATC	2 cut(s)	525, 565
Bpu14I	TTCGAA	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	728
BpuMI	CCSGG	1 cut(s)	790
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	2 cut(s)	152, 176
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	5 cut(s)	11, 374, 393, 789, 907
BsaWI	WCCGGW	2 cut(s)	304, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 1040
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	932
BseDI	CCNNGG	5 cut(s)	11, 374, 393, 789, 907
BseGI	GGATG	4 cut(s)	580, 694, 970, 1034
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	518, 1040
BseMII	CTCAG	3 cut(s)	671, 753, 969
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	7 cut(s)	112, 150, 582, 585, 725, 812, 815
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	5 cut(s)	228, 470, 788, 816, 906
BshTI	ACCGGT	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	4 cut(s)	305, 407, 542, 789
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	518, 1040
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	5 cut(s)	228, 470, 788, 816, 906
Bso31I	GGTCTC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	71
Bsp119I	TTCGAA	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp13I	TCCGGA	1 cut(s)	541
Bsp143I	GATC	6 cut(s)	384, 409, 451, 604, 831, 927
Bsp68I	TCGCGA	1 cut(s)	255
BspACI	CCGC	7 cut(s)	134, 140, 155, 265, 569, 756, 770
BspANI	GGCC	5 cut(s)	228, 470, 788, 816, 906
BspCNI	CTCAG	3 cut(s)	672, 754, 970
BspEI	TCCGGA	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	471
BspPI	GGATC	4 cut(s)	417, 599, 839, 922
BspT104I	TTCGAA	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	5 cut(s)	11, 374, 393, 789, 907
BssMI	GATC	6 cut(s)	384, 409, 451, 604, 831, 927
BssNI	GRCGYC	2 cut(s)	152, 176
BssT1I	CCWWGG	3 cut(s)	11, 393, 907
Bst2UI	CCWGG	1 cut(s)	932
Bst4CI	ACNGT	2 cut(s)	67, 653
Bst6I	CTCTTC	2 cut(s)	130, 424
BstACI	GRCGYC	2 cut(s)	152, 176
BstBI	TTCGAA	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	680, 762, 978
BstF5I	GGATG	4 cut(s)	580, 694, 970, 1034
BstFNI	CGCG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	6 cut(s)	387, 412, 454, 607, 834, 930
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	6 cut(s)	384, 409, 451, 604, 831, 927
BstMWI	GCNNNNNNNGC	2 cut(s)	767, 983
BstNI	CCWGG	1 cut(s)	932
BstSCI	CCNGG	2 cut(s)	788, 930
BstUI	CGCG	1 cut(s)	255
BstX2I	RGATCY	2 cut(s)	384, 927
BstYI	RGATCY	2 cut(s)	384, 927
BsuRI	GGCC	5 cut(s)	228, 470, 788, 816, 906
BtgZI	GCGATG	1 cut(s)	545
BtsCI	GGATG	4 cut(s)	580, 694, 970, 1034
BtsIMutI	CAGTG	3 cut(s)	63, 316, 429
BtuMI	TCGCGA	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	469
CseI	GACGC	1 cut(s)	160
CspAI	ACCGGT	1 cut(s)	304
CviAII	CATG	1 cut(s)	224
DdeI	CTNAG	3 cut(s)	680, 762, 978
DpnI	GATC	6 cut(s)	386, 411, 453, 606, 833, 929
DpnII	GATC	6 cut(s)	384, 409, 451, 604, 831, 927
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	130, 424
EarI	CTCTTC	2 cut(s)	130, 424
Eco130I	CCWWGG	3 cut(s)	11, 393, 907
Eco147I	AGGCCT	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	68
Eco57I	CTGAAG	2 cut(s)	405, 944
Eco88I	CYCGRG	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	930
EcoT14I	CCWWGG	3 cut(s)	11, 393, 907
ErhI	CCWWGG	3 cut(s)	11, 393, 907
FaeI	CATG	1 cut(s)	227
FaiI	YATR	6 cut(s)	44, 225, 459, 563, 603, 998
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	223
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	2 cut(s)	155, 569
FokI	GGATG	4 cut(s)	587, 701, 957, 1041
Fsp4HI	GCNGC	2 cut(s)	155, 569
FspBI	CTAG	1 cut(s)	1002
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	2 cut(s)	155, 569
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	5 cut(s)	228, 470, 788, 816, 906
HapII	CCGG	4 cut(s)	305, 407, 542, 789
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	2 cut(s)	152, 176
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	3 cut(s)	257, 446, 869
HpaII	CCGG	4 cut(s)	305, 407, 542, 789
HphI	GGTGA	9 cut(s)	108, 123, 171, 319, 341, 704, 728, 787, 821
Hpy166II	GTNNAC	2 cut(s)	1015, 1034
Hpy188I	TCNGA	7 cut(s)	375, 414, 451, 521, 681, 874, 924
Hpy188III	TCNNGA	6 cut(s)	71, 73, 254, 277, 358, 542
Hpy8I	GTNNAC	2 cut(s)	1015, 1034
Hpy99I	CGWCG	3 cut(s)	178, 239, 824
HpyAV	CCTTC	3 cut(s)	349, 594, 806
HpyCH4III	ACNGT	2 cut(s)	67, 653
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	767, 983
HpyF3I	CTNAG	3 cut(s)	680, 762, 978
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	2 cut(s)	152, 176
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	566
Kpn2I	TCCGGA	1 cut(s)	541
Kzo9I	GATC	6 cut(s)	384, 409, 451, 604, 831, 927
LmnI	GCTCC	3 cut(s)	19, 595, 802
LweI	GCATC	2 cut(s)	525, 565
MaeI	CTAG	1 cut(s)	1002
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	177, 347
MalI	GATC	6 cut(s)	386, 411, 453, 606, 833, 929
MboI	GATC	6 cut(s)	384, 409, 451, 604, 831, 927
MboII	GAAGA	8 cut(s)	74, 117, 391, 394, 411, 635, 878, 937
MflI	RGATCY	2 cut(s)	384, 927
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	7 cut(s)	198, 207, 213, 272, 616, 638, 958
MlyI	GAGTC	1 cut(s)	251
MroI	TCCGGA	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	493
MseI	TTAA	3 cut(s)	363, 951, 1038
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	3 cut(s)	571, 756, 977
MspI	CCGG	4 cut(s)	305, 407, 542, 789
MspR9I	CCNGG	2 cut(s)	790, 932
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	932
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	767, 983
NciI	CCSGG	1 cut(s)	790
NdeII	GATC	6 cut(s)	384, 409, 451, 604, 831, 927
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	2 cut(s)	177, 347
NruI	TCGCGA	1 cut(s)	255
NspV	TTCGAA	1 cut(s)	497
PaeR7I	CTCGAG	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	816
PctI	GAATGC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	446, 869
PflFI	GACNNNGTC	1 cut(s)	940
PinAI	ACCGGT	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	156, 570
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	930
PspGI	CCWGG	1 cut(s)	930
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	384, 927
PsyI	GACNNNGTC	1 cut(s)	940
PvuII	CAGCTG	1 cut(s)	977
RruI	TCGCGA	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	363, 951, 1038
SatI	GCNGC	2 cut(s)	155, 569
Sau3AI	GATC	6 cut(s)	384, 409, 451, 604, 831, 927
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	790, 932
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	2 cut(s)	525, 565
Sfr274I	CTCGAG	1 cut(s)	71
SfuI	TTCGAA	1 cut(s)	497
SgrAI	CRCCGGYG	1 cut(s)	304
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	71, 707
SmoI	CTYRAG	2 cut(s)	71, 707
Sse9I	AATT	7 cut(s)	198, 207, 213, 272, 616, 638, 958
SseBI	AGGCCT	1 cut(s)	816
SsiI	CCGC	7 cut(s)	134, 140, 155, 265, 569, 756, 770
SspMI	CTAG	1 cut(s)	1002
StuI	AGGCCT	1 cut(s)	816
StyD4I	CCNGG	2 cut(s)	788, 930
StyI	CCWWGG	3 cut(s)	11, 393, 907
TaaI	ACNGT	2 cut(s)	67, 653
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	7 cut(s)	72, 173, 237, 260, 342, 497, 898
TasI	AATT	7 cut(s)	198, 207, 213, 272, 616, 638, 958
TauI	GCSGC	2 cut(s)	157, 571
TfiI	GAWTC	2 cut(s)	446, 869
Tru1I	TTAA	3 cut(s)	363, 951, 1038
Tru9I	TTAA	3 cut(s)	363, 951, 1038
TscAI	CASTG	3 cut(s)	70, 323, 429
TseFI	GTSAC	2 cut(s)	177, 347
Tsp45I	GTSAC	2 cut(s)	177, 347
TspDTI	ATGAA	3 cut(s)	635, 893, 959
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	3 cut(s)	70, 323, 429
Tth111I	GACNNNGTC	1 cut(s)	940
XapI	RAATTY	3 cut(s)	198, 272, 958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	493
XspI	CTAG	1 cut(s)	1002
ZraI	GACGTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.