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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16630 AT2G16270 |
| fragaria_vesca | FvH4_2g03070 FvH4_6g23772 |
| prunus_persica | Prupe.8G151500_v2.0.a1 Prupe.8G151700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0247921 |
| rosa_laevigata | RLG00000015172 |
| rosa_multiflora | Rmu_co8497843.1_g000001 Rmu_sc0011977.1_g000002 Rmu_sc0017619.1_g000005 |
| rosa_roxburghii | Rroxscaffold_180G00433180 Rroxscaffold_7G00213580 |
| rosa_rugosa | Rorug05G0529500 |
| rosa_samantha | Rh6AG044300 Rh6BG039100 Rh6CG037900 Rh6DG034900 |
| rosa_wichuraiana | Rw6G003850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1600, 1625, 2468 |
| AccII | CGCG | 1 cut(s) | 234 |
| AciI | CCGC | 4 cut(s) | 91, 344, 386, 705 |
| AcoI | YGGCCR | 2 cut(s) | 3, 168 |
| AcsI | RAATTY | 5 cut(s) | 319, 1238, 1273, 2081, 2493 |
| AcuI | CTGAAG | 7 cut(s) | 1083, 1248, 1719, 1751, 1995, 2031, 2390 |
| AdeI | CACNNNGTG | 1 cut(s) | 299 |
| AfaI | GTAC | 5 cut(s) | 1364, 1395, 1656, 1764, 1966 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 502, 1600, 1625, 2292, 2468 |
| AflIII | ACRYGT | 1 cut(s) | 1657 |
| AjnI | CCWGG | 4 cut(s) | 1941, 2274, 2394, 2405 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1073, 1105, 1818, 1850 |
| Alw21I | GWGCWC | 7 cut(s) | 477, 552, 1342, 1643, 2180, 2268, 2348 |
| Alw26I | GTCTC | 5 cut(s) | 369, 424, 814, 1306, 2069 |
| Alw44I | GTGCAC | 1 cut(s) | 1338 |
| Ama87I | CYCGRG | 1 cut(s) | 2542 |
| AoxI | GGCC | 6 cut(s) | 3, 168, 487, 597, 749, 1350 |
| ApaLI | GTGCAC | 1 cut(s) | 1338 |
| ApeKI | GCWGC | 5 cut(s) | 707, 946, 1511, 1703, 1772 |
| ApoI | RAATTY | 5 cut(s) | 319, 1238, 1273, 2081, 2493 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 8, 40 |
| AseI | ATTAAT | 1 cut(s) | 2135 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 850, 2375 |
| AspA2I | CCTAGG | 1 cut(s) | 143 |
| AspLEI | GCGC | 1 cut(s) | 2541 |
| AspS9I | GGNCC | 3 cut(s) | 262, 1074, 1351 |
| AsuC2I | CCSGG | 1 cut(s) | 1169 |
| AsuHPI | GGTGA | 6 cut(s) | 24, 285, 321, 2110, 2451, 2557 |
| AvaI | CYCGRG | 1 cut(s) | 2542 |
| AvaII | GGWCC | 2 cut(s) | 262, 1074 |
| AvrII | CCTAGG | 1 cut(s) | 143 |
| BaeGI | GKGCMC | 1 cut(s) | 1342 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 2 cut(s) | 466, 2141 |
| BanII | GRGCYC | 2 cut(s) | 552, 2348 |
| BbsI | GAAGAC | 1 cut(s) | 21 |
| Bbv12I | GWGCWC | 7 cut(s) | 477, 552, 1342, 1643, 2180, 2268, 2348 |
| BbvI | GCAGC | 5 cut(s) | 694, 958, 1523, 1715, 1759 |
| BccI | CCATC | 5 cut(s) | 199, 1253, 1397, 2221, 2470 |
| BceAI | ACGGC | 2 cut(s) | 271, 325 |
| BciT130I | CCWGG | 4 cut(s) | 1943, 2276, 2396, 2407 |
| BciVI | GTATCC | 1 cut(s) | 1400 |
| BclI | TGATCA | 2 cut(s) | 1420, 1843 |
| BcnI | CCSGG | 1 cut(s) | 1169 |
| BcoDI | GTCTC | 5 cut(s) | 369, 424, 814, 1306, 2069 |
| BfaI | CTAG | 4 cut(s) | 144, 1269, 1796, 2223 |
| BfmI | CTRYAG | 3 cut(s) | 1524, 1644, 1926 |
| BfoI | RGCGCY | 1 cut(s) | 2542 |
| BfuI | GTATCC | 1 cut(s) | 1400 |
| BisI | GCNGC | 6 cut(s) | 345, 708, 947, 1512, 1704, 1773 |
| BlnI | CCTAGG | 1 cut(s) | 143 |
| BlsI | GCNGC | 6 cut(s) | 346, 709, 948, 1513, 1705, 1774 |
| BmcAI | AGTACT | 3 cut(s) | 1364, 1764, 1966 |
| Bme1390I | CCNGG | 5 cut(s) | 1169, 1943, 2276, 2396, 2407 |
| Bme18I | GGWCC | 2 cut(s) | 262, 1074 |
| BmeT110I | CYCGRG | 1 cut(s) | 2542 |
| BmgT120I | GGNCC | 3 cut(s) | 262, 1074, 1351 |
| BmiI | GGNNCC | 4 cut(s) | 468, 582, 1353, 2143 |
| BmrFI | CCNGG | 5 cut(s) | 1169, 1943, 2276, 2396, 2407 |
| BmrI | ACTGGG | 1 cut(s) | 114 |
| BmsI | GCATC | 5 cut(s) | 913, 1336, 2011, 2224, 2391 |
| BmuI | ACTGGG | 1 cut(s) | 114 |
| BpiI | GAAGAC | 1 cut(s) | 21 |
| BpuEI | CTTGAG | 2 cut(s) | 845, 1219 |
| BpuMI | CCSGG | 1 cut(s) | 1169 |
| BsaAI | YACGTR | 1 cut(s) | 1658 |
| BsaBI | GATNNNNATC | 1 cut(s) | 699 |
| BsaI | GGTCTC | 1 cut(s) | 424 |
| BsaWI | WCCGGW | 1 cut(s) | 676 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 349, 379, 539, 569 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 502, 1600, 1625, 2292, 2468 |
| Bse1I | ACTGG | 8 cut(s) | 109, 275, 401, 672, 1911, 1972, 2235, 2303 |
| Bse8I | GATNNNNATC | 1 cut(s) | 699 |
| BseBI | CCWGG | 4 cut(s) | 1943, 2276, 2396, 2407 |
| BseGI | GGATG | 5 cut(s) | 712, 1396, 2026, 2239, 2334 |
| BseJI | GATNNNNATC | 1 cut(s) | 699 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 502, 1600, 1625, 2292, 2468 |
| BseMII | CTCAG | 9 cut(s) | 174, 767, 788, 861, 893, 908, 1305, 1743, 2253 |
| BseNI | ACTGG | 8 cut(s) | 109, 275, 401, 672, 1911, 1972, 2235, 2303 |
| BseRI | GAGGAG | 3 cut(s) | 590, 1067, 1901 |
| BseSI | GKGCMC | 1 cut(s) | 1342 |
| BseXI | GCAGC | 5 cut(s) | 694, 958, 1523, 1715, 1759 |
| BseYI | CCCAGC | 1 cut(s) | 2107 |
| BsgI | GTGCAG | 2 cut(s) | 1530, 1758 |
| Bsh1236I | CGCG | 1 cut(s) | 234 |
| BshFI | GGCC | 6 cut(s) | 5, 170, 489, 599, 751, 1352 |
| BsiHKAI | GWGCWC | 7 cut(s) | 477, 552, 1342, 1643, 2180, 2268, 2348 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2542 |
| BsiSI | CCGG | 3 cut(s) | 167, 677, 1169 |
| BslFI | GGGAC | 1 cut(s) | 2413 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 502, 1600, 1625, 2292, 2468 |
| BsmAI | GTCTC | 5 cut(s) | 369, 424, 814, 1306, 2069 |
| BsmBI | CGTCTC | 1 cut(s) | 369 |
| BsmFI | GGGAC | 1 cut(s) | 2413 |
| BsmI | GAATGC | 1 cut(s) | 2375 |
| BsnI | GGCC | 6 cut(s) | 5, 170, 489, 599, 751, 1352 |
| Bso31I | GGTCTC | 1 cut(s) | 424 |
| BsoBI | CYCGRG | 1 cut(s) | 2542 |
| Bsp1286I | GDGCHC | 7 cut(s) | 477, 552, 1342, 1643, 2180, 2268, 2348 |
| Bsp19I | CCATGG | 2 cut(s) | 2094, 2451 |
| Bsp68I | TCGCGA | 1 cut(s) | 234 |
| BspACI | CCGC | 4 cut(s) | 91, 344, 386, 705 |
| BspANI | GGCC | 6 cut(s) | 5, 170, 489, 599, 751, 1352 |
| BspCNI | CTCAG | 9 cut(s) | 175, 766, 789, 862, 892, 907, 1306, 1744, 2254 |
| BspFNI | CGCG | 1 cut(s) | 234 |
| BspLI | GGNNCC | 4 cut(s) | 468, 582, 1353, 2143 |
| BspQI | GCTCTTC | 2 cut(s) | 856, 2168 |
| BspTNI | GGTCTC | 1 cut(s) | 424 |
| BsrI | ACTGG | 8 cut(s) | 109, 275, 401, 672, 1911, 1972, 2235, 2303 |
| BssT1I | CCWWGG | 5 cut(s) | 143, 351, 1479, 2094, 2451 |
| Bst2UI | CCWGG | 4 cut(s) | 1943, 2276, 2396, 2407 |
| Bst6I | CTCTTC | 7 cut(s) | 856, 966, 975, 1563, 1713, 2168, 2293 |
| BstBAI | YACGTR | 1 cut(s) | 1658 |
| BstC8I | GCNNGC | 2 cut(s) | 43, 1859 |
| BstDSI | CCRYGG | 3 cut(s) | 219, 2094, 2451 |
| BstEII | GGTNACC | 1 cut(s) | 223 |
| BstF5I | GGATG | 5 cut(s) | 712, 1396, 2026, 2239, 2334 |
| BstFNI | CGCG | 1 cut(s) | 234 |
| BstH2I | RGCGCY | 1 cut(s) | 2542 |
| BstHHI | GCGC | 1 cut(s) | 2541 |
| BstMAI | GTCTC | 5 cut(s) | 369, 424, 814, 1306, 2069 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 309, 1023, 1241, 1703, 1778 |
| BstNI | CCWGG | 4 cut(s) | 1943, 2276, 2396, 2407 |
| BstNSI | RCATGY | 1 cut(s) | 1781 |
| BstPI | GGTNACC | 1 cut(s) | 223 |
| BstSCI | CCNGG | 5 cut(s) | 1167, 1941, 2274, 2394, 2405 |
| BstSFI | CTRYAG | 3 cut(s) | 1524, 1644, 1926 |
| BstSLI | GKGCMC | 1 cut(s) | 1342 |
| BstUI | CGCG | 1 cut(s) | 234 |
| BstV1I | GCAGC | 5 cut(s) | 694, 958, 1523, 1715, 1759 |
| BstV2I | GAAGAC | 1 cut(s) | 21 |
| BstX2I | RGATCY | 3 cut(s) | 466, 2059, 2141 |
| BstYI | RGATCY | 3 cut(s) | 466, 2059, 2141 |
| BsuI | GTATCC | 1 cut(s) | 1400 |
| BsuRI | GGCC | 6 cut(s) | 5, 170, 489, 599, 751, 1352 |
| BtgI | CCRYGG | 3 cut(s) | 219, 2094, 2451 |
| BtgZI | GCGATG | 1 cut(s) | 2199 |
| BtsCI | GGATG | 5 cut(s) | 712, 1396, 2026, 2239, 2334 |
| BtsI | GCAGTG | 2 cut(s) | 933, 1110 |
| BtsIMutI | CAGTG | 9 cut(s) | 858, 933, 1110, 1432, 1521, 1641, 1904, 1923, 2259 |
| BtuMI | TCGCGA | 1 cut(s) | 234 |
| Cac8I | GCNNGC | 2 cut(s) | 43, 1859 |
| CfoI | GCGC | 1 cut(s) | 2541 |
| Cfr13I | GGNCC | 3 cut(s) | 262, 1074, 1351 |
| Csp6I | GTAC | 5 cut(s) | 1363, 1394, 1655, 1763, 1965 |
| CviQI | GTAC | 5 cut(s) | 1363, 1394, 1655, 1763, 1965 |
| DraIII | CACNNNGTG | 1 cut(s) | 299 |
| EaeI | YGGCCR | 2 cut(s) | 3, 168 |
| Eam1104I | CTCTTC | 7 cut(s) | 856, 966, 975, 1563, 1713, 2168, 2293 |
| EarI | CTCTTC | 7 cut(s) | 856, 966, 975, 1563, 1713, 2168, 2293 |
| EciI | GGCGGA | 1 cut(s) | 401 |
| Ecl136II | GAGCTC | 2 cut(s) | 550, 2346 |
| Eco130I | CCWWGG | 5 cut(s) | 143, 351, 1479, 2094, 2451 |
| Eco147I | AGGCCT | 3 cut(s) | 489, 599, 751 |
| Eco24I | GRGCYC | 2 cut(s) | 552, 2348 |
| Eco31I | GGTCTC | 1 cut(s) | 424 |
| Eco47I | GGWCC | 2 cut(s) | 262, 1074 |
| Eco53kI | GAGCTC | 2 cut(s) | 550, 2346 |
| Eco57I | CTGAAG | 7 cut(s) | 1083, 1248, 1719, 1751, 1995, 2031, 2390 |
| Eco88I | CYCGRG | 1 cut(s) | 2542 |
| Eco91I | GGTNACC | 1 cut(s) | 223 |
| EcoICRI | GAGCTC | 2 cut(s) | 550, 2346 |
| EcoO65I | GGTNACC | 1 cut(s) | 223 |
| EcoRII | CCWGG | 4 cut(s) | 1941, 2274, 2394, 2405 |
| EcoT14I | CCWWGG | 5 cut(s) | 143, 351, 1479, 2094, 2451 |
| EcoT38I | GRGCYC | 2 cut(s) | 552, 2348 |
| ErhI | CCWWGG | 5 cut(s) | 143, 351, 1479, 2094, 2451 |
| Esp3I | CGTCTC | 1 cut(s) | 369 |
| FaqI | GGGAC | 1 cut(s) | 2413 |
| FauI | CCCGC | 1 cut(s) | 712 |
| FauNDI | CATATG | 1 cut(s) | 2485 |
| FbaI | TGATCA | 2 cut(s) | 1420, 1843 |
| Fnu4HI | GCNGC | 6 cut(s) | 345, 708, 947, 1512, 1704, 1773 |
| FokI | GGATG | 5 cut(s) | 699, 1403, 2033, 2246, 2321 |
| FriOI | GRGCYC | 2 cut(s) | 552, 2348 |
| Fsp4HI | GCNGC | 6 cut(s) | 345, 708, 947, 1512, 1704, 1773 |
| FspBI | CTAG | 4 cut(s) | 144, 1269, 1796, 2223 |
| GlaI | GCGC | 1 cut(s) | 2540 |
| GluI | GCNGC | 6 cut(s) | 345, 708, 947, 1512, 1704, 1773 |
| GsaI | CCCAGC | 1 cut(s) | 2111 |
| HaeII | RGCGCY | 1 cut(s) | 2542 |
| HaeIII | GGCC | 6 cut(s) | 5, 170, 489, 599, 751, 1352 |
| HapII | CCGG | 3 cut(s) | 167, 677, 1169 |
| HhaI | GCGC | 1 cut(s) | 2541 |
| Hin6I | GCGC | 1 cut(s) | 2539 |
| HinP1I | GCGC | 1 cut(s) | 2539 |
| HincII | GTYRAC | 4 cut(s) | 1468, 1687, 1711, 1921 |
| HindII | GTYRAC | 4 cut(s) | 1468, 1687, 1711, 1921 |
| HindIII | AAGCTT | 1 cut(s) | 97 |
| HpaI | GTTAAC | 1 cut(s) | 1711 |
| HpaII | CCGG | 3 cut(s) | 167, 677, 1169 |
| HphI | GGTGA | 6 cut(s) | 24, 285, 321, 2110, 2451, 2557 |
| Hpy166II | GTNNAC | 8 cut(s) | 293, 1110, 1340, 1468, 1687, 1711, 1921, 2459 |
| Hpy8I | GTNNAC | 8 cut(s) | 293, 1110, 1340, 1468, 1687, 1711, 1921, 2459 |
| Hpy99I | CGWCG | 2 cut(s) | 28, 198 |
| HpyCH4IV | ACGT | 2 cut(s) | 362, 1657 |
| HpyCH4V | TGCA | 9 cut(s) | 137, 926, 965, 1327, 1340, 1360, 1511, 1775, 2237 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 309, 1023, 1241, 1703, 1778 |
| HpySE526I | ACGT | 2 cut(s) | 362, 1657 |
| HspAI | GCGC | 1 cut(s) | 2539 |
| Ksp22I | TGATCA | 2 cut(s) | 1420, 1843 |
| KspAI | GTTAAC | 1 cut(s) | 1711 |
| LguI | GCTCTTC | 2 cut(s) | 856, 2168 |
| LmnI | GCTCC | 4 cut(s) | 147, 547, 1628, 1945 |
| Lsp1109I | GCAGC | 5 cut(s) | 694, 958, 1523, 1715, 1759 |
| LweI | GCATC | 5 cut(s) | 913, 1336, 2011, 2224, 2391 |
| MaeI | CTAG | 4 cut(s) | 144, 1269, 1796, 2223 |
| MaeII | ACGT | 2 cut(s) | 362, 1657 |
| MaeIII | GTNAC | 8 cut(s) | 223, 327, 355, 913, 1427, 2098, 2524, 2563 |
| MfeI | CAATTG | 1 cut(s) | 2439 |
| MflI | RGATCY | 3 cut(s) | 466, 2059, 2141 |
| MhlI | GDGCHC | 7 cut(s) | 477, 552, 1342, 1643, 2180, 2268, 2348 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 6 cut(s) | 294, 533, 608, 1828, 1991, 2435 |
| MmeI | TCCRAC | 2 cut(s) | 217, 1475 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroXI | GAANNNNTTC | 2 cut(s) | 850, 2375 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 8 cut(s) | 62, 621, 1191, 1382, 1563, 1710, 2085, 2135 |
| MslI | CAYNNNNRTG | 2 cut(s) | 717, 1040 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 4 cut(s) | 344, 707, 1514, 1706 |
| MspI | CCGG | 3 cut(s) | 167, 677, 1169 |
| MspR9I | CCNGG | 5 cut(s) | 1169, 1943, 2276, 2396, 2407 |
| MunI | CAATTG | 1 cut(s) | 2439 |
| Mva1269I | GAATGC | 1 cut(s) | 2375 |
| MvaI | CCWGG | 4 cut(s) | 1943, 2276, 2396, 2407 |
| MvnI | CGCG | 1 cut(s) | 234 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 309, 1023, 1241, 1703, 1778 |
| NciI | CCSGG | 1 cut(s) | 1169 |
| NcoI | CCATGG | 2 cut(s) | 2094, 2451 |
| NdeI | CATATG | 1 cut(s) | 2485 |
| NlaIV | GGNNCC | 4 cut(s) | 468, 582, 1353, 2143 |
| NmuCI | GTSAC | 5 cut(s) | 327, 355, 1427, 2098, 2563 |
| NruI | TCGCGA | 1 cut(s) | 234 |
| NspI | RCATGY | 1 cut(s) | 1781 |
| PaeR7I | CTCGAG | 1 cut(s) | 2542 |
| PceI | AGGCCT | 3 cut(s) | 489, 599, 751 |
| PciSI | GCTCTTC | 2 cut(s) | 856, 2168 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2357 |
| PctI | GAATGC | 1 cut(s) | 2375 |
| PdmI | GAANNNNTTC | 2 cut(s) | 850, 2375 |
| PfeI | GAWTC | 5 cut(s) | 236, 451, 1938, 2444, 2550 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1600, 1625, 2468 |
| PfoI | TCCNGGA | 2 cut(s) | 1941, 2274 |
| PkrI | GCNGC | 6 cut(s) | 346, 709, 948, 1513, 1705, 1774 |
| PleI | GAGTC | 6 cut(s) | 293, 533, 608, 1827, 1990, 2434 |
| PpsI | GAGTC | 6 cut(s) | 293, 533, 608, 1827, 1990, 2434 |
| Ppu21I | YACGTR | 1 cut(s) | 1658 |
| PshBI | ATTAAT | 1 cut(s) | 2135 |
| Psp124BI | GAGCTC | 2 cut(s) | 552, 2348 |
| Psp6I | CCWGG | 4 cut(s) | 1941, 2274, 2394, 2405 |
| PspEI | GGTNACC | 1 cut(s) | 223 |
| PspFI | CCCAGC | 1 cut(s) | 2107 |
| PspGI | CCWGG | 4 cut(s) | 1941, 2274, 2394, 2405 |
| PspN4I | GGNNCC | 4 cut(s) | 468, 582, 1353, 2143 |
| PspPI | GGNCC | 3 cut(s) | 262, 1074, 1351 |
| PspXI | VCTCGAGB | 1 cut(s) | 2542 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 933, 965 |
| PsuI | RGATCY | 3 cut(s) | 466, 2059, 2141 |
| PvuII | CAGCTG | 2 cut(s) | 1514, 1706 |
| RruI | TCGCGA | 1 cut(s) | 234 |
| RsaI | GTAC | 5 cut(s) | 1364, 1395, 1656, 1764, 1966 |
| RsaNI | GTAC | 5 cut(s) | 1363, 1394, 1655, 1763, 1965 |
| RseI | CAYNNNNRTG | 2 cut(s) | 717, 1040 |
| SacI | GAGCTC | 2 cut(s) | 552, 2348 |
| SapI | GCTCTTC | 2 cut(s) | 856, 2168 |
| SaqAI | TTAA | 8 cut(s) | 62, 621, 1191, 1382, 1563, 1710, 2085, 2135 |
| SatI | GCNGC | 6 cut(s) | 345, 708, 947, 1512, 1704, 1773 |
| Sau96I | GGNCC | 3 cut(s) | 262, 1074, 1351 |
| ScaI | AGTACT | 3 cut(s) | 1364, 1764, 1966 |
| SchI | GAGTC | 6 cut(s) | 294, 533, 608, 1828, 1991, 2435 |
| ScrFI | CCNGG | 5 cut(s) | 1169, 1943, 2276, 2396, 2407 |
| SduI | GDGCHC | 7 cut(s) | 477, 552, 1342, 1643, 2180, 2268, 2348 |
| SfaNI | GCATC | 5 cut(s) | 913, 1336, 2011, 2224, 2391 |
| SfcI | CTRYAG | 3 cut(s) | 1524, 1644, 1926 |
| Sfr274I | CTCGAG | 1 cut(s) | 2542 |
| SinI | GGWCC | 2 cut(s) | 262, 1074 |
| SlaI | CTCGAG | 1 cut(s) | 2542 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 717, 1040 |
| SmlI | CTYRAG | 3 cut(s) | 824, 1198, 2542 |
| SmoI | CTYRAG | 3 cut(s) | 824, 1198, 2542 |
| SseBI | AGGCCT | 3 cut(s) | 489, 599, 751 |
| SsiI | CCGC | 4 cut(s) | 91, 344, 386, 705 |
| SspI | AATATT | 2 cut(s) | 791, 890 |
| SspMI | CTAG | 4 cut(s) | 144, 1269, 1796, 2223 |
| SstI | GAGCTC | 2 cut(s) | 552, 2348 |
| StuI | AGGCCT | 3 cut(s) | 489, 599, 751 |
| StyD4I | CCNGG | 5 cut(s) | 1167, 1941, 2274, 2394, 2405 |
| StyI | CCWWGG | 5 cut(s) | 143, 351, 1479, 2094, 2451 |
| TaiI | ACGT | 2 cut(s) | 365, 1660 |
| TaqI | TCGA | 3 cut(s) | 203, 2379, 2543 |
| TaqII | GACCGA | 1 cut(s) | 406 |
| TatI | WGTACW | 3 cut(s) | 1362, 1762, 1964 |
| TauI | GCSGC | 1 cut(s) | 347 |
| TfiI | GAWTC | 5 cut(s) | 236, 451, 1938, 2444, 2550 |
| Tru1I | TTAA | 8 cut(s) | 62, 621, 1191, 1382, 1563, 1710, 2085, 2135 |
| Tru9I | TTAA | 8 cut(s) | 62, 621, 1191, 1382, 1563, 1710, 2085, 2135 |
| TscAI | CASTG | 9 cut(s) | 865, 933, 1117, 1432, 1528, 1648, 1911, 1930, 2266 |
| TseFI | GTSAC | 5 cut(s) | 327, 355, 1427, 2098, 2563 |
| TseI | GCWGC | 5 cut(s) | 707, 946, 1511, 1703, 1772 |
| Tsp45I | GTSAC | 5 cut(s) | 327, 355, 1427, 2098, 2563 |
| TspGWI | ACGGA | 1 cut(s) | 278 |
| TspRI | CASTG | 9 cut(s) | 865, 933, 1117, 1432, 1528, 1648, 1911, 1930, 2266 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1600, 1625, 2468 |
| VneI | GTGCAC | 1 cut(s) | 1338 |
| VpaK11BI | GGWCC | 2 cut(s) | 262, 1074 |
| VspI | ATTAAT | 1 cut(s) | 2135 |
| XapI | RAATTY | 5 cut(s) | 319, 1238, 1273, 2081, 2493 |
| XceI | RCATGY | 1 cut(s) | 1781 |
| XhoI | CTCGAG | 1 cut(s) | 2542 |
| XmaJI | CCTAGG | 1 cut(s) | 143 |
| XmnI | GAANNNNTTC | 2 cut(s) | 850, 2375 |
| XspI | CTAG | 4 cut(s) | 144, 1269, 1796, 2223 |
| ZrmI | AGTACT | 3 cut(s) | 1364, 1764, 1966 |