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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G16630 AT2G16270 |
| fragaria_vesca | FvH4_2g03070 FvH4_6g23772 |
| prunus_persica | Prupe.8G151500_v2.0.a1 Prupe.8G151700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0247921 |
| rosa_laevigata | RLG00000015172 |
| rosa_multiflora | Rmu_co8497843.1_g000001 Rmu_sc0011977.1_g000002 Rmu_sc0017619.1_g000005 |
| rosa_roxburghii | Rroxscaffold_180G00433180 Rroxscaffold_7G00213580 |
| rosa_rugosa | Rorug05G0529500 |
| rosa_samantha | Rh6AG044300 Rh6BG039100 Rh6CG037900 Rh6DG034900 |
| rosa_wichuraiana | Rw6G003850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1179 |
| Acc65I | GGTACC | 3 cut(s) | 409, 904, 2052 |
| AccB1I | GGYRCC | 4 cut(s) | 409, 904, 1148, 2052 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1475, 2171 |
| AccBSI | CCGCTC | 1 cut(s) | 2058 |
| AccII | CGCG | 3 cut(s) | 8, 35, 1064 |
| AccIII | TCCGGA | 1 cut(s) | 351 |
| AciI | CCGC | 9 cut(s) | 6, 11, 157, 254, 257, 288, 291, 1064, 2056 |
| AclWI | GGATC | 2 cut(s) | 668, 1598 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 5 cut(s) | 265, 1156, 1610, 1663, 2196 |
| AcuI | CTGAAG | 5 cut(s) | 516, 876, 1452, 1673, 1731 |
| AcyI | GRCGYC | 1 cut(s) | 602 |
| AfaI | GTAC | 6 cut(s) | 411, 906, 1437, 1596, 1737, 2054 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 250, 463, 1475, 2157, 2171 |
| AflIII | ACRYGT | 1 cut(s) | 1498 |
| AgeI | ACCGGT | 1 cut(s) | 412 |
| AjnI | CCWGG | 3 cut(s) | 698, 2094, 2108 |
| Alw21I | GWGCWC | 2 cut(s) | 164, 2007 |
| Alw26I | GTCTC | 4 cut(s) | 134, 170, 1549, 2121 |
| AlwI | GGATC | 2 cut(s) | 668, 1598 |
| Ama87I | CYCGRG | 4 cut(s) | 39, 571, 1203, 2251 |
| Aor13HI | TCCGGA | 1 cut(s) | 351 |
| AoxI | GGCC | 7 cut(s) | 3, 445, 509, 701, 722, 1162, 2106 |
| ApaI | GGGCCC | 2 cut(s) | 449, 1166 |
| ApeKI | GCWGC | 3 cut(s) | 1000, 1397, 1973 |
| ApoI | RAATTY | 5 cut(s) | 265, 1156, 1610, 1663, 2196 |
| AsiGI | ACCGGT | 1 cut(s) | 412 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 266, 1686 |
| Asp718I | GGTACC | 3 cut(s) | 409, 904, 2052 |
| AspLEI | GCGC | 5 cut(s) | 10, 637, 1005, 1057, 2250 |
| AspS9I | GGNCC | 7 cut(s) | 241, 445, 446, 509, 1162, 1163, 2106 |
| AsuC2I | CCSGG | 2 cut(s) | 239, 808 |
| AsuHPI | GGTGA | 7 cut(s) | 88, 773, 1177, 1271, 1849, 1911, 1969 |
| AvaI | CYCGRG | 4 cut(s) | 39, 571, 1203, 2251 |
| AvaII | GGWCC | 1 cut(s) | 241 |
| BaeGI | GKGCMC | 2 cut(s) | 449, 1166 |
| BanI | GGYRCC | 4 cut(s) | 409, 904, 1148, 2052 |
| BanII | GRGCYC | 4 cut(s) | 164, 348, 449, 1166 |
| BauI | CACGAG | 1 cut(s) | 1009 |
| Bbv12I | GWGCWC | 2 cut(s) | 164, 2007 |
| BbvI | GCAGC | 3 cut(s) | 987, 1409, 1960 |
| BccI | CCATC | 7 cut(s) | 290, 661, 752, 938, 1186, 1898, 2173 |
| BceAI | ACGGC | 2 cut(s) | 170, 615 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 585, 619 |
| BciT130I | CCWGG | 3 cut(s) | 700, 2096, 2110 |
| BciVI | GTATCC | 1 cut(s) | 787 |
| BclI | TGATCA | 3 cut(s) | 1366, 1566, 1729 |
| BcnI | CCSGG | 2 cut(s) | 239, 808 |
| BcoDI | GTCTC | 4 cut(s) | 134, 170, 1549, 2121 |
| BfaI | CTAG | 1 cut(s) | 2265 |
| BfoI | RGCGCY | 1 cut(s) | 2251 |
| BfuI | GTATCC | 1 cut(s) | 787 |
| BglII | AGATCT | 1 cut(s) | 324 |
| BisI | GCNGC | 8 cut(s) | 6, 11, 255, 258, 291, 1001, 1398, 1974 |
| BlsI | GCNGC | 8 cut(s) | 7, 12, 256, 259, 292, 1002, 1399, 1975 |
| Bme1390I | CCNGG | 5 cut(s) | 239, 700, 808, 2096, 2110 |
| Bme18I | GGWCC | 1 cut(s) | 241 |
| BmeT110I | CYCGRG | 4 cut(s) | 39, 571, 1203, 2251 |
| BmgT120I | GGNCC | 7 cut(s) | 241, 445, 446, 509, 1162, 1163, 2106 |
| BmrFI | CCNGG | 5 cut(s) | 239, 700, 808, 2096, 2110 |
| BmsI | GCATC | 3 cut(s) | 634, 1189, 2084 |
| BpuEI | CTTGAG | 1 cut(s) | 797 |
| BpuMI | CCSGG | 2 cut(s) | 239, 808 |
| BsaHI | GRCGYC | 1 cut(s) | 602 |
| BsaJI | CCNNGG | 5 cut(s) | 152, 165, 698, 1833, 2133 |
| BsaWI | WCCGGW | 5 cut(s) | 98, 243, 351, 406, 412 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 133, 163 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 250, 463, 1475, 2157, 2171 |
| Bse118I | RCCGGY | 2 cut(s) | 250, 412 |
| Bse1I | ACTGG | 2 cut(s) | 645, 1659 |
| Bse3DI | GCAATG | 3 cut(s) | 507, 630, 1166 |
| BseAI | TCCGGA | 1 cut(s) | 351 |
| BseBI | CCWGG | 3 cut(s) | 700, 2096, 2110 |
| BseDI | CCNNGG | 5 cut(s) | 152, 165, 698, 1833, 2133 |
| BseGI | GGATG | 2 cut(s) | 649, 763 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 250, 463, 1475, 2157, 2171 |
| BseMI | GCAATG | 3 cut(s) | 507, 630, 1166 |
| BseMII | CTCAG | 8 cut(s) | 552, 740, 789, 1116, 1569, 1800, 1800, 1992 |
| BseNI | ACTGG | 2 cut(s) | 645, 1659 |
| BseSI | GKGCMC | 2 cut(s) | 449, 1166 |
| BseXI | GCAGC | 3 cut(s) | 987, 1409, 1960 |
| BseYI | CCCAGC | 2 cut(s) | 941, 1846 |
| Bsh1236I | CGCG | 3 cut(s) | 8, 35, 1064 |
| Bsh1285I | CGRYCG | 2 cut(s) | 248, 812 |
| BshFI | GGCC | 7 cut(s) | 5, 447, 511, 703, 724, 1164, 2108 |
| BshNI | GGYRCC | 4 cut(s) | 409, 904, 1148, 2052 |
| BshTI | ACCGGT | 1 cut(s) | 412 |
| BsiEI | CGRYCG | 2 cut(s) | 248, 812 |
| BsiHKAI | GWGCWC | 2 cut(s) | 164, 2007 |
| BsiHKCI | CYCGRG | 4 cut(s) | 39, 571, 1203, 2251 |
| BslFI | GGGAC | 3 cut(s) | 10, 924, 1965 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 250, 463, 1475, 2157, 2171 |
| BsmAI | GTCTC | 4 cut(s) | 134, 170, 1549, 2121 |
| BsmBI | CGTCTC | 1 cut(s) | 170 |
| BsmFI | GGGAC | 3 cut(s) | 10, 924, 1965 |
| BsmI | GAATGC | 1 cut(s) | 1454 |
| BsnI | GGCC | 7 cut(s) | 5, 447, 511, 703, 724, 1164, 2108 |
| BsoBI | CYCGRG | 4 cut(s) | 39, 571, 1203, 2251 |
| Bsp120I | GGGCCC | 2 cut(s) | 445, 1162 |
| Bsp1286I | GDGCHC | 5 cut(s) | 164, 348, 449, 1166, 2007 |
| Bsp13I | TCCGGA | 1 cut(s) | 351 |
| Bsp1407I | TGTACA | 1 cut(s) | 1735 |
| Bsp19I | CCATGG | 3 cut(s) | 165, 1833, 2133 |
| Bsp68I | TCGCGA | 1 cut(s) | 35 |
| BspACI | CCGC | 9 cut(s) | 6, 11, 157, 254, 257, 288, 291, 1064, 2056 |
| BspANI | GGCC | 7 cut(s) | 5, 447, 511, 703, 724, 1164, 2108 |
| BspCNI | CTCAG | 8 cut(s) | 551, 741, 790, 1117, 1570, 1799, 1801, 1993 |
| BspEI | TCCGGA | 1 cut(s) | 351 |
| BspFNI | CGCG | 3 cut(s) | 8, 35, 1064 |
| BspPI | GGATC | 2 cut(s) | 668, 1598 |
| BspT107I | GGYRCC | 4 cut(s) | 409, 904, 1148, 2052 |
| BsrBI | CCGCTC | 1 cut(s) | 2058 |
| BsrDI | GCAATG | 3 cut(s) | 507, 630, 1166 |
| BsrFI | RCCGGY | 2 cut(s) | 250, 412 |
| BsrGI | TGTACA | 1 cut(s) | 1735 |
| BsrI | ACTGG | 2 cut(s) | 645, 1659 |
| BssAI | RCCGGY | 2 cut(s) | 250, 412 |
| BssECI | CCNNGG | 5 cut(s) | 152, 165, 698, 1833, 2133 |
| BssNI | GRCGYC | 1 cut(s) | 602 |
| BssSI | CACGAG | 1 cut(s) | 1009 |
| BssT1I | CCWWGG | 3 cut(s) | 165, 1833, 2133 |
| Bst2BI | CACGAG | 1 cut(s) | 1009 |
| Bst2UI | CCWGG | 3 cut(s) | 700, 2096, 2110 |
| Bst4CI | ACNGT | 5 cut(s) | 181, 557, 708, 1823, 2015 |
| Bst6I | CTCTTC | 4 cut(s) | 981, 1638, 2096, 2220 |
| BstACI | GRCGYC | 1 cut(s) | 602 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1940 |
| BstAUI | TGTACA | 1 cut(s) | 1735 |
| BstC8I | GCNNGC | 5 cut(s) | 46, 252, 998, 1105, 1762 |
| BstDSI | CCRYGG | 4 cut(s) | 152, 165, 1833, 2133 |
| BstEII | GGTNACC | 1 cut(s) | 1957 |
| BstF5I | GGATG | 2 cut(s) | 649, 763 |
| BstFNI | CGCG | 3 cut(s) | 8, 35, 1064 |
| BstH2I | RGCGCY | 1 cut(s) | 2251 |
| BstHHI | GCGC | 5 cut(s) | 10, 637, 1005, 1057, 2250 |
| BstMAI | GTCTC | 4 cut(s) | 134, 170, 1549, 2121 |
| BstMCI | CGRYCG | 2 cut(s) | 248, 812 |
| BstNI | CCWGG | 3 cut(s) | 700, 2096, 2110 |
| BstNSI | RCATGY | 1 cut(s) | 1502 |
| BstPI | GGTNACC | 1 cut(s) | 1957 |
| BstSCI | CCNGG | 5 cut(s) | 237, 698, 806, 2094, 2108 |
| BstSLI | GKGCMC | 2 cut(s) | 449, 1166 |
| BstUI | CGCG | 3 cut(s) | 8, 35, 1064 |
| BstV1I | GCAGC | 3 cut(s) | 987, 1409, 1960 |
| BstX2I | RGATCY | 1 cut(s) | 324 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1159 |
| BstYI | RGATCY | 1 cut(s) | 324 |
| BsuI | GTATCC | 1 cut(s) | 787 |
| BsuRI | GGCC | 7 cut(s) | 5, 447, 511, 703, 724, 1164, 2108 |
| BtgI | CCRYGG | 4 cut(s) | 152, 165, 1833, 2133 |
| BtsCI | GGATG | 2 cut(s) | 649, 763 |
| BtsI | GCAGTG | 1 cut(s) | 1026 |
| BtsIMutI | CAGTG | 5 cut(s) | 638, 1026, 1569, 1652, 1998 |
| BtuMI | TCGCGA | 1 cut(s) | 35 |
| Cac8I | GCNNGC | 5 cut(s) | 46, 252, 998, 1105, 1762 |
| CfoI | GCGC | 5 cut(s) | 10, 637, 1005, 1057, 2250 |
| Cfr10I | RCCGGY | 2 cut(s) | 250, 412 |
| Cfr13I | GGNCC | 7 cut(s) | 241, 445, 446, 509, 1162, 1163, 2106 |
| CseI | GACGC | 1 cut(s) | 591 |
| Csp6I | GTAC | 6 cut(s) | 410, 905, 1436, 1595, 1736, 2053 |
| CspAI | ACCGGT | 1 cut(s) | 412 |
| CviAII | CATG | 7 cut(s) | 166, 271, 1499, 1639, 1733, 1834, 2134 |
| CviQI | GTAC | 6 cut(s) | 410, 905, 1436, 1595, 1736, 2053 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 4 cut(s) | 981, 1638, 2096, 2220 |
| EarI | CTCTTC | 4 cut(s) | 981, 1638, 2096, 2220 |
| EciI | GGCGGA | 2 cut(s) | 172, 277 |
| Ecl136II | GAGCTC | 1 cut(s) | 162 |
| Eco130I | CCWWGG | 3 cut(s) | 165, 1833, 2133 |
| Eco24I | GRGCYC | 4 cut(s) | 164, 348, 449, 1166 |
| Eco47I | GGWCC | 1 cut(s) | 241 |
| Eco53kI | GAGCTC | 1 cut(s) | 162 |
| Eco57I | CTGAAG | 5 cut(s) | 516, 876, 1452, 1673, 1731 |
| Eco88I | CYCGRG | 4 cut(s) | 39, 571, 1203, 2251 |
| Eco91I | GGTNACC | 1 cut(s) | 1957 |
| EcoICRI | GAGCTC | 1 cut(s) | 162 |
| EcoO109I | RGGNCCY | 1 cut(s) | 446 |
| EcoO65I | GGTNACC | 1 cut(s) | 1957 |
| EcoRI | GAATTC | 2 cut(s) | 1663, 2196 |
| EcoRII | CCWGG | 3 cut(s) | 698, 2094, 2108 |
| EcoT14I | CCWWGG | 3 cut(s) | 165, 1833, 2133 |
| EcoT38I | GRGCYC | 4 cut(s) | 164, 348, 449, 1166 |
| ErhI | CCWWGG | 3 cut(s) | 165, 1833, 2133 |
| Esp3I | CGTCTC | 1 cut(s) | 170 |
| FaeI | CATG | 7 cut(s) | 169, 274, 1502, 1642, 1736, 1837, 2137 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 311, 343, 989, 1021 |
| FaqI | GGGAC | 3 cut(s) | 10, 924, 1965 |
| FatI | CATG | 7 cut(s) | 165, 270, 1498, 1638, 1732, 1833, 2133 |
| FauNDI | CATATG | 1 cut(s) | 2188 |
| FbaI | TGATCA | 3 cut(s) | 1366, 1566, 1729 |
| Fnu4HI | GCNGC | 8 cut(s) | 6, 11, 255, 258, 291, 1001, 1398, 1974 |
| FokI | GGATG | 2 cut(s) | 656, 770 |
| FriOI | GRGCYC | 4 cut(s) | 164, 348, 449, 1166 |
| Fsp4HI | GCNGC | 8 cut(s) | 6, 11, 255, 258, 291, 1001, 1398, 1974 |
| FspBI | CTAG | 1 cut(s) | 2265 |
| GlaI | GCGC | 5 cut(s) | 9, 636, 1004, 1056, 2249 |
| GluI | GCNGC | 8 cut(s) | 6, 11, 255, 258, 291, 1001, 1398, 1974 |
| GsaI | CCCAGC | 2 cut(s) | 945, 1850 |
| HaeII | RGCGCY | 1 cut(s) | 2251 |
| HaeIII | GGCC | 7 cut(s) | 5, 447, 511, 703, 724, 1164, 2108 |
| HgaI | GACGC | 1 cut(s) | 591 |
| HhaI | GCGC | 5 cut(s) | 10, 637, 1005, 1057, 2250 |
| Hin1I | GRCGYC | 1 cut(s) | 602 |
| Hin1II | CATG | 7 cut(s) | 169, 274, 1502, 1642, 1736, 1837, 2137 |
| Hin6I | GCGC | 5 cut(s) | 8, 635, 1003, 1055, 2248 |
| HinP1I | GCGC | 5 cut(s) | 8, 635, 1003, 1055, 2248 |
| HincII | GTYRAC | 1 cut(s) | 1483 |
| HindII | GTYRAC | 1 cut(s) | 1483 |
| HindIII | AAGCTT | 2 cut(s) | 91, 1308 |
| HphI | GGTGA | 7 cut(s) | 88, 773, 1177, 1271, 1849, 1911, 1969 |
| Hpy166II | GTNNAC | 2 cut(s) | 1026, 1483 |
| Hpy8I | GTNNAC | 2 cut(s) | 1026, 1483 |
| Hpy99I | CGWCG | 2 cut(s) | 19, 607 |
| HpyAV | CCTTC | 6 cut(s) | 129, 820, 859, 1932, 2028, 2203 |
| HpyCH4III | ACNGT | 5 cut(s) | 181, 557, 708, 1823, 2015 |
| HpyCH4V | TGCA | 7 cut(s) | 1103, 1171, 1330, 1409, 1760, 1934, 1976 |
| Hsp92I | GRCGYC | 1 cut(s) | 602 |
| Hsp92II | CATG | 7 cut(s) | 169, 274, 1502, 1642, 1736, 1837, 2137 |
| HspAI | GCGC | 5 cut(s) | 8, 635, 1003, 1055, 2248 |
| Kpn2I | TCCGGA | 1 cut(s) | 351 |
| KpnI | GGTACC | 3 cut(s) | 413, 908, 2056 |
| KroI | GCCGGC | 1 cut(s) | 250 |
| KroNI | GCCGGC | 1 cut(s) | 252 |
| Ksp22I | TGATCA | 3 cut(s) | 1366, 1566, 1729 |
| LmnI | GCTCC | 7 cut(s) | 68, 159, 167, 409, 664, 1343, 1394 |
| Lsp1109I | GCAGC | 3 cut(s) | 987, 1409, 1960 |
| LweI | GCATC | 3 cut(s) | 634, 1189, 2084 |
| MaeI | CTAG | 1 cut(s) | 2265 |
| MaeIII | GTNAC | 7 cut(s) | 184, 841, 1235, 1867, 1957, 2233, 2272 |
| MbiI | CCGCTC | 1 cut(s) | 2058 |
| MfeI | CAATTG | 2 cut(s) | 1362, 2142 |
| MflI | RGATCY | 1 cut(s) | 324 |
| MhlI | GDGCHC | 5 cut(s) | 164, 348, 449, 1166, 2007 |
| MlyI | GAGTC | 6 cut(s) | 136, 998, 1488, 2123, 2141, 2230 |
| MmeI | TCCRAC | 3 cut(s) | 206, 792, 1858 |
| MreI | CGCCGGCG | 1 cut(s) | 250 |
| MroI | TCCGGA | 1 cut(s) | 351 |
| MroNI | GCCGGC | 1 cut(s) | 250 |
| MroXI | GAANNNNTTC | 2 cut(s) | 266, 1686 |
| MseI | TTAA | 4 cut(s) | 1130, 1209, 1767, 2205 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1190, 1898 |
| MspA1I | CMGCKG | 2 cut(s) | 1400, 1808 |
| MspR9I | CCNGG | 5 cut(s) | 239, 700, 808, 2096, 2110 |
| MunI | CAATTG | 2 cut(s) | 1362, 2142 |
| Mva1269I | GAATGC | 1 cut(s) | 1454 |
| MvaI | CCWGG | 3 cut(s) | 700, 2096, 2110 |
| MvnI | CGCG | 3 cut(s) | 8, 35, 1064 |
| NaeI | GCCGGC | 1 cut(s) | 252 |
| NciI | CCSGG | 2 cut(s) | 239, 808 |
| NcoI | CCATGG | 3 cut(s) | 165, 1833, 2133 |
| NdeI | CATATG | 1 cut(s) | 2188 |
| NgoMIV | GCCGGC | 1 cut(s) | 250 |
| NlaIII | CATG | 7 cut(s) | 169, 274, 1502, 1642, 1736, 1837, 2137 |
| NmuCI | GTSAC | 5 cut(s) | 1235, 1867, 1957, 2233, 2272 |
| NruI | TCGCGA | 1 cut(s) | 35 |
| NspI | RCATGY | 1 cut(s) | 1502 |
| PaeR7I | CTCGAG | 1 cut(s) | 2251 |
| PciI | ACATGT | 1 cut(s) | 1498 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 78 |
| PctI | GAATGC | 1 cut(s) | 1454 |
| PdiI | GCCGGC | 1 cut(s) | 252 |
| PdmI | GAANNNNTTC | 2 cut(s) | 266, 1686 |
| PfeI | GAWTC | 5 cut(s) | 218, 562, 1628, 1798, 1881 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1475, 2171 |
| PinAI | ACCGGT | 1 cut(s) | 412 |
| PkrI | GCNGC | 8 cut(s) | 7, 12, 256, 259, 292, 1002, 1399, 1975 |
| PleI | GAGTC | 6 cut(s) | 136, 997, 1487, 2123, 2141, 2230 |
| PpsI | GAGTC | 6 cut(s) | 136, 997, 1487, 2123, 2141, 2230 |
| PscI | ACATGT | 1 cut(s) | 1498 |
| PsiI | TTATAA | 1 cut(s) | 1179 |
| Psp124BI | GAGCTC | 1 cut(s) | 164 |
| Psp6I | CCWGG | 3 cut(s) | 698, 2094, 2108 |
| PspEI | GGTNACC | 1 cut(s) | 1957 |
| PspFI | CCCAGC | 2 cut(s) | 941, 1846 |
| PspGI | CCWGG | 3 cut(s) | 698, 2094, 2108 |
| PspOMI | GGGCCC | 2 cut(s) | 445, 1162 |
| PspPI | GGNCC | 7 cut(s) | 241, 445, 446, 509, 1162, 1163, 2106 |
| PspXI | VCTCGAGB | 1 cut(s) | 2251 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1208, 1240 |
| PsuI | RGATCY | 1 cut(s) | 324 |
| PvuII | CAGCTG | 2 cut(s) | 1400, 1808 |
| RruI | TCGCGA | 1 cut(s) | 35 |
| RsaI | GTAC | 6 cut(s) | 411, 906, 1437, 1596, 1737, 2054 |
| RsaNI | GTAC | 6 cut(s) | 410, 905, 1436, 1595, 1736, 2053 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1190, 1898 |
| SacI | GAGCTC | 1 cut(s) | 164 |
| SaqAI | TTAA | 4 cut(s) | 1130, 1209, 1767, 2205 |
| SatI | GCNGC | 8 cut(s) | 6, 11, 255, 258, 291, 1001, 1398, 1974 |
| Sau96I | GGNCC | 7 cut(s) | 241, 445, 446, 509, 1162, 1163, 2106 |
| SchI | GAGTC | 6 cut(s) | 136, 998, 1488, 2123, 2141, 2230 |
| ScrFI | CCNGG | 5 cut(s) | 239, 700, 808, 2096, 2110 |
| SduI | GDGCHC | 5 cut(s) | 164, 348, 449, 1166, 2007 |
| SfaNI | GCATC | 3 cut(s) | 634, 1189, 2084 |
| Sfr274I | CTCGAG | 1 cut(s) | 2251 |
| SgrAI | CRCCGGYG | 1 cut(s) | 250 |
| SinI | GGWCC | 1 cut(s) | 241 |
| SlaI | CTCGAG | 1 cut(s) | 2251 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1190, 1898 |
| SmlI | CTYRAG | 2 cut(s) | 776, 2251 |
| SmoI | CTYRAG | 2 cut(s) | 776, 2251 |
| SsiI | CCGC | 9 cut(s) | 6, 11, 157, 254, 257, 288, 291, 1064, 2056 |
| SspI | AATATT | 4 cut(s) | 422, 1175, 1531, 1720 |
| SspMI | CTAG | 1 cut(s) | 2265 |
| SstI | GAGCTC | 1 cut(s) | 164 |
| StyD4I | CCNGG | 5 cut(s) | 237, 698, 806, 2094, 2108 |
| StyI | CCWWGG | 3 cut(s) | 165, 1833, 2133 |
| TaaI | ACNGT | 5 cut(s) | 181, 557, 708, 1823, 2015 |
| TaqI | TCGA | 4 cut(s) | 17, 221, 1227, 2252 |
| TaqII | GACCGA | 2 cut(s) | 347, 1976 |
| TatI | WGTACW | 2 cut(s) | 1594, 1735 |
| TauI | GCSGC | 5 cut(s) | 8, 13, 257, 260, 293 |
| TfiI | GAWTC | 5 cut(s) | 218, 562, 1628, 1798, 1881 |
| Tru1I | TTAA | 4 cut(s) | 1130, 1209, 1767, 2205 |
| Tru9I | TTAA | 4 cut(s) | 1130, 1209, 1767, 2205 |
| TscAI | CASTG | 5 cut(s) | 645, 1033, 1569, 1659, 2005 |
| TseFI | GTSAC | 5 cut(s) | 1235, 1867, 1957, 2233, 2272 |
| TseI | GCWGC | 3 cut(s) | 1000, 1397, 1973 |
| Tsp45I | GTSAC | 5 cut(s) | 1235, 1867, 1957, 2233, 2272 |
| TspDTI | ATGAA | 7 cut(s) | 259, 704, 1368, 1530, 1686, 1916, 2097 |
| TspRI | CASTG | 5 cut(s) | 645, 1033, 1569, 1659, 2005 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1475, 2171 |
| VpaK11BI | GGWCC | 1 cut(s) | 241 |
| XapI | RAATTY | 5 cut(s) | 265, 1156, 1610, 1663, 2196 |
| XceI | RCATGY | 1 cut(s) | 1502 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1472 |
| XhoI | CTCGAG | 1 cut(s) | 2251 |
| XmnI | GAANNNNTTC | 2 cut(s) | 266, 1686 |
| XspI | CTAG | 1 cut(s) | 2265 |