Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017619.1

Orthogroup ID

OG0012059

Physical Location & Seq

Genomic Coordinates Forward (+)

33076 .. 34660

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017619.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

atggccgcgccgccgtcgaacaagtccccaatcgccacccgagcaagccctaattcccgaagctccgaaatcgccaaccccgtccggcgaagcttcaccggaaacccattcgccaagccttcaatcgtcgctaattctgagactcctcctccacggcggagctccatgggcagagagacggtggttactttttcggaggacaaagaaaacgggaaagattcgagttggaaacaaatccgggtccggtcgccggcggcggcgaagaatttcatgtcgccgaccatctccgccgcctcaaagatcaacgcttctccgagaaagaagatcttgaccgagaggaacgagcccgtccggacttcttcttcttcttctgcttccgagttcaaaatcaaaagcgtgtcctttgctccggtaccggtggaatattccgatcacaaggaggaggtgggccccacaaccccacctgtggtggtggtttctaagcctccgaaaccctctgaagcaatggtggggccacctgaacctgtttgtgaaaatgcctcagaggaacaacctgactgtgtgaatcttgacccgagtttcaagattagtcctccggcagcggcggcgttttcgggttcgggtcatcgggtcattgcgccgctggatgctgacccatctgctccacctccttatgatcccaagaccaattacctttctcccaggccacagtttcttcattacaggccaaacccaagagttgagtattatctgagaaaggatggtgagggcaagaggcttgaggagagcttttcggatactgaggaaacccggttggattattctctgaaggaagtagaagatgttacttcccctgctgaagtagtaaaggaggaggcggaggaagaagaagcaaaagaggaggaggtacctgtttcggaaccaatgcccaccatcatcagtcccagcaccaagtctatgccaaaggaggaggaggctgttgaagtagaagagtccagcaagctgcgcttctcgtggagatcaaagttcactgctttgataatggttttggcagttgcgcttttcgcggttttggctgttgaagtgaatgttcaggtttggtctgcaagctctatgtcttttgtatctgagttcatttccaatatcagaggtgccaagaatttgggcccattgcaatattataacctcaccttgatggaagatgctcgggttaatgagtattctgtgttcgatcaatgtcacaaagaaatggaagaaatgggtgagtttgatgtgtttggaaatgtaatggcaagtgtgtttgaggttgaagcttcggaagaaaagtgtctgcaagagattggagcagctgaatatgaagaaccaattgatcaggaggctggtctggcagagattggagcagctgaatatgcagaaccaatttatcaggaggctgaagtaccacagattgaatgcttggaagagaaccagcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

491

Amino Acids

54.08

Weight (kDa)

4.69

Isoelectric Point (pI)

74.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16630 AT2G16270
fragaria_vesca	FvH4_2g03070 FvH4_6g23772
prunus_persica	Prupe.8G151500_v2.0.a1 Prupe.8G151700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0247921
rosa_laevigata	RLG00000015172
rosa_multiflora	Rmu_co8497843.1_g000001 Rmu_sc0011977.1_g000002 Rmu_sc0017619.1_g000005
rosa_roxburghii	Rroxscaffold_180G00433180 Rroxscaffold_7G00213580
rosa_rugosa	Rorug05G0529500
rosa_samantha	Rh6AG044300 Rh6BG039100 Rh6CG037900 Rh6DG034900
rosa_wichuraiana	Rw6G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1182
Acc65I	GGTACC	2 cut(s)	412, 907
AccB1I	GGYRCC	3 cut(s)	412, 907, 1151
AccII	CGCG	2 cut(s)	8, 1067
AccIII	TCCGGA	1 cut(s)	351
AclWI	GGATC	1 cut(s)	671
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	265, 1159
AcuI	CTGAAG	4 cut(s)	519, 848, 879, 1455
AfaI	GTAC	3 cut(s)	414, 909, 1440
AfiI	CCNNNNNNNGG	2 cut(s)	250, 466
AgeI	ACCGGT	1 cut(s)	415
AgsI	TTSAA	7 cut(s)	123, 385, 583, 983, 1082, 1310, 1451
AjnI	CCWGG	1 cut(s)	701
AluBI	AGCT	9 cut(s)	63, 93, 162, 789, 1003, 1110, 1313, 1349, 1403
AluI	AGCT	9 cut(s)	63, 93, 162, 789, 1003, 1110, 1313, 1349, 1403
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	2 cut(s)	134, 170
AlwI	GGATC	1 cut(s)	671
Ama87I	CYCGRG	3 cut(s)	39, 574, 1206
Aor13HI	TCCGGA	1 cut(s)	351
AoxI	GGCC	6 cut(s)	3, 448, 512, 704, 725, 1165
ApaI	GGGCCC	2 cut(s)	452, 1169
ApeKI	GCWGC	4 cut(s)	599, 1003, 1346, 1400
ApoI	RAATTY	2 cut(s)	265, 1159
AsiGI	ACCGGT	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	266
Asp718I	GGTACC	2 cut(s)	412, 907
AspLEI	GCGC	4 cut(s)	10, 640, 1008, 1060
AspS9I	GGNCC	6 cut(s)	241, 448, 449, 512, 1165, 1166
AsuC2I	CCSGG	2 cut(s)	239, 811
AsuHPI	GGTGA	4 cut(s)	88, 776, 1180, 1274
AvaI	CYCGRG	3 cut(s)	39, 574, 1206
AvaII	GGWCC	1 cut(s)	241
BaeGI	GKGCMC	2 cut(s)	452, 1169
BanI	GGYRCC	3 cut(s)	412, 907, 1151
BanII	GRGCYC	4 cut(s)	164, 348, 452, 1169
BauI	CACGAG	1 cut(s)	1012
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	4 cut(s)	611, 990, 1358, 1412
BccI	CCATC	5 cut(s)	290, 664, 755, 941, 1189
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	703
BciVI	GTATCC	1 cut(s)	790
BclI	TGATCA	1 cut(s)	1369
BcnI	CCSGG	2 cut(s)	239, 811
BcoDI	GTCTC	2 cut(s)	134, 170
BfuI	GTATCC	1 cut(s)	790
BglII	AGATCT	1 cut(s)	324
Bme1390I	CCNGG	3 cut(s)	239, 703, 811
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	3 cut(s)	39, 574, 1206
BmgT120I	GGNCC	6 cut(s)	241, 448, 449, 512, 1165, 1166
BmiI	GGNNCC	9 cut(s)	242, 414, 450, 451, 513, 909, 921, 1153, 1167
BmrFI	CCNGG	3 cut(s)	239, 703, 811
BmsI	GCATC	2 cut(s)	637, 1192
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	2 cut(s)	239, 811
BsaJI	CCNNGG	3 cut(s)	152, 165, 701
BsaWI	WCCGGW	5 cut(s)	98, 243, 351, 409, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 466
Bse118I	RCCGGY	2 cut(s)	250, 415
Bse3DI	GCAATG	3 cut(s)	510, 633, 1169
BseAI	TCCGGA	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	703
BseDI	CCNNGG	3 cut(s)	152, 165, 701
BseGI	GGATG	2 cut(s)	652, 766
BseLI	CCNNNNNNNGG	2 cut(s)	250, 466
BseMI	GCAATG	3 cut(s)	510, 633, 1169
BseMII	CTCAG	5 cut(s)	129, 555, 743, 792, 1119
BseRI	GAGGAG	9 cut(s)	135, 138, 455, 797, 887, 914, 917, 983, 986
BseSI	GKGCMC	2 cut(s)	452, 1169
BseXI	GCAGC	4 cut(s)	611, 990, 1358, 1412
BseYI	CCCAGC	1 cut(s)	944
Bsh1236I	CGCG	2 cut(s)	8, 1067
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	6 cut(s)	5, 450, 514, 706, 727, 1167
BshNI	GGYRCC	3 cut(s)	412, 907, 1151
BshTI	ACCGGT	1 cut(s)	415
BsiEI	CGRYCG	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	164
BsiHKCI	CYCGRG	3 cut(s)	39, 574, 1206
BslFI	GGGAC	2 cut(s)	10, 927
BslI	CCNNNNNNNGG	2 cut(s)	250, 466
BsmAI	GTCTC	2 cut(s)	134, 170
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	2 cut(s)	10, 927
BsmI	GAATGC	1 cut(s)	1457
BsnI	GGCC	6 cut(s)	5, 450, 514, 706, 727, 1167
BsoBI	CYCGRG	3 cut(s)	39, 574, 1206
Bsp120I	GGGCCC	2 cut(s)	448, 1165
Bsp1286I	GDGCHC	4 cut(s)	164, 348, 452, 1169
Bsp13I	TCCGGA	1 cut(s)	351
Bsp143I	GATC	7 cut(s)	300, 324, 430, 676, 1019, 1231, 1369
Bsp19I	CCATGG	1 cut(s)	165
BspANI	GGCC	6 cut(s)	5, 450, 514, 706, 727, 1167
BspCNI	CTCAG	5 cut(s)	130, 554, 744, 793, 1120
BspEI	TCCGGA	1 cut(s)	351
BspFNI	CGCG	2 cut(s)	8, 1067
BspLI	GGNNCC	9 cut(s)	242, 414, 450, 451, 513, 909, 921, 1153, 1167
BspPI	GGATC	1 cut(s)	671
BspT107I	GGYRCC	3 cut(s)	412, 907, 1151
BsrDI	GCAATG	3 cut(s)	510, 633, 1169
BsrFI	RCCGGY	2 cut(s)	250, 415
BssAI	RCCGGY	2 cut(s)	250, 415
BssECI	CCNNGG	3 cut(s)	152, 165, 701
BssMI	GATC	7 cut(s)	300, 324, 430, 676, 1019, 1231, 1369
BssSI	CACGAG	1 cut(s)	1012
BssT1I	CCWWGG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	1012
Bst2UI	CCWGG	1 cut(s)	703
Bst4CI	ACNGT	3 cut(s)	181, 560, 711
Bst6I	CTCTTC	2 cut(s)	984, 1455
BstC8I	GCNNGC	4 cut(s)	46, 252, 1001, 1108
BstDEI	CTNAG	6 cut(s)	138, 480, 541, 752, 801, 1128
BstDSI	CCRYGG	2 cut(s)	152, 165
BstF5I	GGATG	2 cut(s)	652, 766
BstFNI	CGCG	2 cut(s)	8, 1067
BstHHI	GCGC	4 cut(s)	10, 640, 1008, 1060
BstKTI	GATC	7 cut(s)	303, 327, 433, 679, 1022, 1234, 1372
BstMAI	GTCTC	2 cut(s)	134, 170
BstMBI	GATC	7 cut(s)	300, 324, 430, 676, 1019, 1231, 1369
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 168, 605, 1005, 1064, 1073, 1385, 1409
BstNI	CCWGG	1 cut(s)	703
BstSCI	CCNGG	3 cut(s)	237, 701, 809
BstSLI	GKGCMC	2 cut(s)	452, 1169
BstUI	CGCG	2 cut(s)	8, 1067
BstV1I	GCAGC	4 cut(s)	611, 990, 1358, 1412
BstX2I	RGATCY	1 cut(s)	324
BstXI	CCANNNNNNTGG	1 cut(s)	1162
BstYI	RGATCY	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	6 cut(s)	5, 450, 514, 706, 727, 1167
BtgI	CCRYGG	2 cut(s)	152, 165
BtsCI	GGATG	2 cut(s)	652, 766
BtsI	GCAGTG	1 cut(s)	1029
BtsIMutI	CAGTG	1 cut(s)	1029
Cac8I	GCNNGC	4 cut(s)	46, 252, 1001, 1108
CfoI	GCGC	4 cut(s)	10, 640, 1008, 1060
Cfr10I	RCCGGY	2 cut(s)	250, 415
Cfr13I	GGNCC	6 cut(s)	241, 448, 449, 512, 1165, 1166
Csp6I	GTAC	3 cut(s)	413, 908, 1439
CspAI	ACCGGT	1 cut(s)	415
CviAII	CATG	2 cut(s)	166, 271
CviQI	GTAC	3 cut(s)	413, 908, 1439
DdeI	CTNAG	6 cut(s)	138, 480, 541, 752, 801, 1128
DpnI	GATC	7 cut(s)	302, 326, 432, 678, 1021, 1233, 1371
DpnII	GATC	7 cut(s)	300, 324, 430, 676, 1019, 1231, 1369
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	984, 1455
EarI	CTCTTC	2 cut(s)	984, 1455
EciI	GGCGGA	3 cut(s)	172, 277, 893
Ecl136II	GAGCTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	4 cut(s)	164, 348, 452, 1169
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	162
Eco57I	CTGAAG	4 cut(s)	519, 848, 879, 1455
Eco88I	CYCGRG	3 cut(s)	39, 574, 1206
EcoICRI	GAGCTC	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	701
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	4 cut(s)	164, 348, 452, 1169
ErhI	CCWWGG	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	2 cut(s)	169, 274
FaiI	YATR	8 cut(s)	167, 272, 675, 959, 1115, 1182, 1356, 1410
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 992, 1024
FaqI	GGGAC	2 cut(s)	10, 927
FatI	CATG	2 cut(s)	165, 270
FbaI	TGATCA	1 cut(s)	1369
FokI	GGATG	2 cut(s)	659, 773
FriOI	GRGCYC	4 cut(s)	164, 348, 452, 1169
GlaI	GCGC	4 cut(s)	9, 639, 1007, 1059
GsaI	CCCAGC	1 cut(s)	948
HaeIII	GGCC	6 cut(s)	5, 450, 514, 706, 727, 1167
HhaI	GCGC	4 cut(s)	10, 640, 1008, 1060
Hin1II	CATG	2 cut(s)	169, 274
Hin6I	GCGC	4 cut(s)	8, 638, 1006, 1058
HinP1I	GCGC	4 cut(s)	8, 638, 1006, 1058
HindIII	AAGCTT	2 cut(s)	91, 1311
HinfI	GANTC	4 cut(s)	142, 218, 565, 992
HphI	GGTGA	4 cut(s)	88, 776, 1180, 1274
Hpy166II	GTNNAC	1 cut(s)	1029
Hpy188III	TCNNGA	7 cut(s)	57, 328, 352, 569, 583, 1373, 1427
Hpy8I	GTNNAC	1 cut(s)	1029
Hpy99I	CGWCG	2 cut(s)	19, 131
HpyAV	CCTTC	2 cut(s)	129, 823
HpyCH4III	ACNGT	3 cut(s)	181, 560, 711
HpyCH4V	TGCA	4 cut(s)	1106, 1174, 1333, 1412
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 168, 605, 1005, 1064, 1073, 1385, 1409
HpyF3I	CTNAG	6 cut(s)	138, 480, 541, 752, 801, 1128
Hsp92II	CATG	2 cut(s)	169, 274
HspAI	GCGC	4 cut(s)	8, 638, 1006, 1058
Kpn2I	TCCGGA	1 cut(s)	351
KpnI	GGTACC	2 cut(s)	416, 911
KroI	GCCGGC	1 cut(s)	250
KroNI	GCCGGC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	1369
Kzo9I	GATC	7 cut(s)	300, 324, 430, 676, 1019, 1231, 1369
LmnI	GCTCC	7 cut(s)	68, 159, 167, 412, 667, 1343, 1397
Lsp1109I	GCAGC	4 cut(s)	611, 990, 1358, 1412
LweI	GCATC	2 cut(s)	637, 1192
MaeIII	GTNAC	3 cut(s)	184, 844, 1238
MalI	GATC	7 cut(s)	302, 326, 432, 678, 1021, 1233, 1371
MboI	GATC	7 cut(s)	300, 324, 430, 676, 1019, 1231, 1369
MfeI	CAATTG	1 cut(s)	1365
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	4 cut(s)	164, 348, 452, 1169
MluCI	AATT	7 cut(s)	52, 133, 265, 688, 1159, 1365, 1419
MlyI	GAGTC	2 cut(s)	136, 1001
MmeI	TCCRAC	2 cut(s)	206, 795
MreI	CGCCGGCG	1 cut(s)	250
MroI	TCCGGA	1 cut(s)	351
MroNI	GCCGGC	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	1212
MslI	CAYNNNNRTG	1 cut(s)	1193
MspA1I	CMGCKG	4 cut(s)	602, 643, 1349, 1403
MspR9I	CCNGG	3 cut(s)	239, 703, 811
MunI	CAATTG	1 cut(s)	1365
Mva1269I	GAATGC	1 cut(s)	1457
MvaI	CCWGG	1 cut(s)	703
MvnI	CGCG	2 cut(s)	8, 1067
MwoI	GCNNNNNNNGC	8 cut(s)	41, 168, 605, 1005, 1064, 1073, 1385, 1409
NaeI	GCCGGC	1 cut(s)	252
NciI	CCSGG	2 cut(s)	239, 811
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	7 cut(s)	300, 324, 430, 676, 1019, 1231, 1369
NgoMIV	GCCGGC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	169, 274
NlaIV	GGNNCC	9 cut(s)	242, 414, 450, 451, 513, 909, 921, 1153, 1167
NmuCI	GTSAC	1 cut(s)	1238
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	1457
PdiI	GCCGGC	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	218, 565
PinAI	ACCGGT	1 cut(s)	415
PleI	GAGTC	2 cut(s)	136, 1000
PpsI	GAGTC	2 cut(s)	136, 1000
PsiI	TTATAA	1 cut(s)	1182
Psp124BI	GAGCTC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	701
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	1 cut(s)	701
PspN4I	GGNNCC	9 cut(s)	242, 414, 450, 451, 513, 909, 921, 1153, 1167
PspOMI	GGGCCC	2 cut(s)	448, 1165
PspPI	GGNCC	6 cut(s)	241, 448, 449, 512, 1165, 1166
PsrI	GAACNNNNNNTAC	2 cut(s)	1211, 1243
PsuI	RGATCY	1 cut(s)	324
PvuII	CAGCTG	2 cut(s)	1349, 1403
RsaI	GTAC	3 cut(s)	414, 909, 1440
RsaNI	GTAC	3 cut(s)	413, 908, 1439
RseI	CAYNNNNRTG	1 cut(s)	1193
SacI	GAGCTC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	1212
Sau3AI	GATC	7 cut(s)	300, 324, 430, 676, 1019, 1231, 1369
Sau96I	GGNCC	6 cut(s)	241, 448, 449, 512, 1165, 1166
SchI	GAGTC	2 cut(s)	136, 1001
ScrFI	CCNGG	3 cut(s)	239, 703, 811
SduI	GDGCHC	4 cut(s)	164, 348, 452, 1169
SfaNI	GCATC	2 cut(s)	637, 1192
SgrAI	CRCCGGYG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	1193
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
Sse9I	AATT	7 cut(s)	52, 133, 265, 688, 1159, 1365, 1419
SspI	AATATT	2 cut(s)	425, 1178
SstI	GAGCTC	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	237, 701, 809
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	181, 560, 711
TaqI	TCGA	3 cut(s)	17, 221, 1230
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	7 cut(s)	52, 133, 265, 688, 1159, 1365, 1419
TauI	GCSGC	8 cut(s)	8, 13, 257, 260, 293, 605, 608, 643
TfiI	GAWTC	2 cut(s)	218, 565
Tru1I	TTAA	1 cut(s)	1212
Tru9I	TTAA	1 cut(s)	1212
TscAI	CASTG	1 cut(s)	1036
TseFI	GTSAC	1 cut(s)	1238
TseI	GCWGC	4 cut(s)	599, 1003, 1346, 1400
Tsp45I	GTSAC	1 cut(s)	1238
TspDTI	ATGAA	4 cut(s)	259, 707, 1123, 1371
TspRI	CASTG	1 cut(s)	1036
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	2 cut(s)	265, 1159
XmnI	GAANNNNTTC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.