Rmu_co8497843.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8497843.1
OG0012059
Physical Location & Seq
Reverse (-)
1781 .. 2809
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8497843.1_g000001.1.cds

Sequence Viewer

Length: 897 bp
attggagcagctgaatatgcagaaccaatttatcaggaggctgaagtaccacagattgaatgcttggaagagaaccagccagagattggagtcaatgatgtggaggaacatgttgagcaagggaatgtacaagttgagaatattgaagccttagaagaagaaatgagactttcagtgatcagagcaactgagaacctcgttgaagaacatactgatccagaatttgaggaaaaggctgaatcaaccaacatggaagaggtttcactggaaaagaattcttatgaagatgtggaagcgcttcaggctacacaggctataactgaagaaaatattgttgttgatcatgtacattccgagccagaaagtattgcaagcattaaggaggagattgtaagctcagaagtattgaatctcacagctgagagggctgacagtatggtttccatggtgaatgtgctgggaattgctttcttggttgtcacattggtcggattcacagccatcatctacatgaagaaacgagagaactcaccttcaaatcctgcaaactatgctgttcaaccattggtgaccgagaaattggctgcaagtcccattgttccaattagcactgagcacacctactgtccttctgaaatgagtagcttccagacgagttcagggtaccgctcaaaaggactaaaggcatcagatgaagtagaaagccaggagaagagtgccaggaagaacaacaggagagactccatggcttcaattgactcctcaatggggtcaccatcttatgggagttttacaacatatgagagaattccaattaagaagggatatggagaagaagagattgtaactcctgttaggcgctcgagcagaattactaggaaagtcacttctccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

33.07

Weight (kDa)

4.51

Isoelectric Point (pI)

65.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 663
AccB1I GGYRCC 1 cut(s) 663
AccB7I CCANNNNNTGG 2 cut(s) 86, 782
AccBSI CCGCTC 1 cut(s) 669
AciI CCGC 1 cut(s) 667
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 3 cut(s) 221, 274, 807
AcuI CTGAAG 3 cut(s) 63, 284, 342
AfaI GTAC 4 cut(s) 48, 129, 348, 665
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 3 cut(s) 86, 768, 782
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 7 cut(s) 59, 146, 203, 409, 537, 560, 753
AjnI CCWGG 2 cut(s) 705, 719
AluBI AGCT 4 cut(s) 11, 396, 419, 645
AluI AGCT 4 cut(s) 11, 396, 419, 645
Alw21I GWGCWC 1 cut(s) 618
Alw26I GTCTC 2 cut(s) 160, 732
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 862
Aor51HI AGCGCT 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 8, 584
ApoI RAATTY 3 cut(s) 221, 274, 807
Asp700I GAANNNNTTC 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 663
AspLEI GCGC 2 cut(s) 298, 861
AsuHPI GGTGA 4 cut(s) 460, 522, 580, 765
AvaI CYCGRG 1 cut(s) 862
BanI GGYRCC 1 cut(s) 663
Bbv12I GWGCWC 1 cut(s) 618
BbvI GCAGC 2 cut(s) 20, 571
BccI CCATC 2 cut(s) 509, 784
BciT130I CCWGG 2 cut(s) 707, 721
BclI TGATCA 2 cut(s) 177, 340
BcoDI GTCTC 2 cut(s) 160, 732
BfaI CTAG 1 cut(s) 876
BfoI RGCGCY 2 cut(s) 299, 862
BisI GCNGC 2 cut(s) 9, 585
BlsI GCNGC 2 cut(s) 10, 586
Bme1390I CCNGG 2 cut(s) 707, 721
BmeT110I CYCGRG 1 cut(s) 862
BmiI GGNNCC 1 cut(s) 665
BmrFI CCNGG 2 cut(s) 707, 721
BmsI GCATC 1 cut(s) 695
BsaJI CCNNGG 2 cut(s) 444, 744
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 768, 782
Bse1I ACTGG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 707, 721
BseDI CCNNGG 2 cut(s) 444, 744
BseLI CCNNNNNNNGG 3 cut(s) 86, 768, 782
BseMII CTCAG 4 cut(s) 180, 411, 411, 603
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 2 cut(s) 398, 751
BseXI GCAGC 2 cut(s) 20, 571
BseYI CCCAGC 1 cut(s) 457
BshNI GGYRCC 1 cut(s) 663
BsiHKAI GWGCWC 1 cut(s) 618
BsiHKCI CYCGRG 1 cut(s) 862
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 3 cut(s) 86, 768, 782
BsmAI GTCTC 2 cut(s) 160, 732
BsmFI GGGAC 1 cut(s) 576
BsmI GAATGC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 862
Bsp1286I GDGCHC 1 cut(s) 618
Bsp1407I TGTACA 2 cut(s) 127, 346
Bsp143I GATC 3 cut(s) 177, 214, 340
Bsp19I CCATGG 2 cut(s) 444, 744
BspACI CCGC 1 cut(s) 667
BspCNI CTCAG 4 cut(s) 181, 410, 412, 604
BspLI GGNNCC 1 cut(s) 665
BspPI GGATC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 663
BsrBI CCGCTC 1 cut(s) 669
BsrGI TGTACA 2 cut(s) 127, 346
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 444, 744
BssMI GATC 3 cut(s) 177, 214, 340
BssT1I CCWWGG 2 cut(s) 444, 744
Bst2UI CCWGG 2 cut(s) 707, 721
Bst4CI ACNGT 2 cut(s) 434, 626
Bst6I CTCTTC 4 cut(s) 63, 249, 707, 831
BstAPI GCANNNNNTGC 1 cut(s) 551
BstAUI TGTACA 2 cut(s) 127, 346
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 5 cut(s) 151, 189, 397, 420, 612
BstDSI CCRYGG 2 cut(s) 444, 744
BstEII GGTNACC 2 cut(s) 568, 771
BstH2I RGCGCY 2 cut(s) 299, 862
BstHHI GCGC 2 cut(s) 298, 861
BstKTI GATC 3 cut(s) 180, 217, 343
BstMAI GTCTC 2 cut(s) 160, 732
BstMBI GATC 3 cut(s) 177, 214, 340
BstMWI GCNNNNNNNGC 5 cut(s) 17, 302, 311, 425, 551
BstNI CCWGG 2 cut(s) 707, 721
BstNSI RCATGY 1 cut(s) 113
BstPI GGTNACC 2 cut(s) 568, 771
BstSCI CCNGG 2 cut(s) 705, 719
BstV1I GCAGC 2 cut(s) 20, 571
BtgI CCRYGG 2 cut(s) 444, 744
BtsIMutI CAGTG 3 cut(s) 180, 263, 609
Cac8I GCNNGC 1 cut(s) 373
CfoI GCGC 2 cut(s) 298, 861
Csp6I GTAC 4 cut(s) 47, 128, 347, 664
CviAII CATG 6 cut(s) 110, 250, 344, 445, 511, 745
CviQI GTAC 4 cut(s) 47, 128, 347, 664
DdeI CTNAG 5 cut(s) 151, 189, 397, 420, 612
DpnI GATC 3 cut(s) 179, 216, 342
DpnII GATC 3 cut(s) 177, 214, 340
Eam1104I CTCTTC 4 cut(s) 63, 249, 707, 831
EarI CTCTTC 4 cut(s) 63, 249, 707, 831
Eco130I CCWWGG 2 cut(s) 444, 744
Eco47III AGCGCT 1 cut(s) 297
Eco57I CTGAAG 3 cut(s) 63, 284, 342
Eco88I CYCGRG 1 cut(s) 862
Eco91I GGTNACC 2 cut(s) 568, 771
EcoO65I GGTNACC 2 cut(s) 568, 771
EcoRI GAATTC 2 cut(s) 274, 807
EcoRII CCWGG 2 cut(s) 705, 719
EcoT14I CCWWGG 2 cut(s) 444, 744
ErhI CCWWGG 2 cut(s) 444, 744
FaeI CATG 6 cut(s) 113, 253, 347, 448, 514, 748
FaqI GGGAC 1 cut(s) 576
FatI CATG 6 cut(s) 109, 249, 343, 444, 510, 744
FauNDI CATATG 1 cut(s) 799
FbaI TGATCA 2 cut(s) 177, 340
Fnu4HI GCNGC 2 cut(s) 9, 585
Fsp4HI GCNGC 2 cut(s) 9, 585
FspBI CTAG 1 cut(s) 876
GlaI GCGC 2 cut(s) 297, 860
GluI GCNGC 2 cut(s) 9, 585
GsaI CCCAGC 1 cut(s) 461
HaeII RGCGCY 2 cut(s) 299, 862
HhaI GCGC 2 cut(s) 298, 861
Hin1II CATG 6 cut(s) 113, 253, 347, 448, 514, 748
Hin6I GCGC 2 cut(s) 296, 859
HinP1I GCGC 2 cut(s) 296, 859
HinfI GANTC 6 cut(s) 90, 239, 409, 492, 740, 758
HphI GGTGA 4 cut(s) 460, 522, 580, 765
Hpy188I TCNGA 6 cut(s) 182, 355, 400, 491, 634, 691
Hpy188III TCNNGA 3 cut(s) 35, 218, 649
HpyAV CCTTC 3 cut(s) 543, 639, 814
HpyCH4III ACNGT 2 cut(s) 434, 626
HpyCH4V TGCA 4 cut(s) 20, 371, 545, 587
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 302, 311, 425, 551
HpyF3I CTNAG 5 cut(s) 151, 189, 397, 420, 612
Hsp92II CATG 6 cut(s) 113, 253, 347, 448, 514, 748
HspAI GCGC 2 cut(s) 296, 859
KpnI GGTACC 1 cut(s) 667
Ksp22I TGATCA 2 cut(s) 177, 340
Kzo9I GATC 3 cut(s) 177, 214, 340
LmnI GCTCC 1 cut(s) 5
Lsp1109I GCAGC 2 cut(s) 20, 571
LweI GCATC 1 cut(s) 695
MaeI CTAG 1 cut(s) 876
MaeIII GTNAC 5 cut(s) 478, 568, 771, 844, 883
MalI GATC 3 cut(s) 179, 216, 342
MbiI CCGCTC 1 cut(s) 669
MboI GATC 3 cut(s) 177, 214, 340
MfeI CAATTG 1 cut(s) 753
MhlI GDGCHC 1 cut(s) 618
MlyI GAGTC 3 cut(s) 99, 734, 752
MmeI TCCRAC 1 cut(s) 469
MnlI CCTC 8 cut(s) 31, 97, 206, 220, 250, 376, 417, 772
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 2 cut(s) 378, 816
MslI CAYNNNNRTG 1 cut(s) 509
MspA1I CMGCKG 2 cut(s) 11, 419
MspR9I CCNGG 2 cut(s) 707, 721
MunI CAATTG 1 cut(s) 753
Mva1269I GAATGC 1 cut(s) 65
MvaI CCWGG 2 cut(s) 707, 721
MwoI GCNNNNNNNGC 5 cut(s) 17, 302, 311, 425, 551
NcoI CCATGG 2 cut(s) 444, 744
NdeI CATATG 1 cut(s) 799
NdeII GATC 3 cut(s) 177, 214, 340
NlaIII CATG 6 cut(s) 113, 253, 347, 448, 514, 748
NlaIV GGNNCC 1 cut(s) 665
NmuCI GTSAC 4 cut(s) 478, 568, 771, 883
NspI RCATGY 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 862
PciI ACATGT 1 cut(s) 109
PctI GAATGC 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 3 cut(s) 239, 409, 492
PflMI CCANNNNNTGG 2 cut(s) 86, 782
PkrI GCNGC 2 cut(s) 10, 586
PleI GAGTC 3 cut(s) 98, 734, 752
PpsI GAGTC 3 cut(s) 98, 734, 752
PscI ACATGT 1 cut(s) 109
Psp6I CCWGG 2 cut(s) 705, 719
PspEI GGTNACC 2 cut(s) 568, 771
PspFI CCCAGC 1 cut(s) 457
PspGI CCWGG 2 cut(s) 705, 719
PspN4I GGNNCC 1 cut(s) 665
PspXI VCTCGAGB 1 cut(s) 862
PvuII CAGCTG 2 cut(s) 11, 419
RsaI GTAC 4 cut(s) 48, 129, 348, 665
RsaNI GTAC 4 cut(s) 47, 128, 347, 664
RseI CAYNNNNRTG 1 cut(s) 509
SaqAI TTAA 2 cut(s) 378, 816
SatI GCNGC 2 cut(s) 9, 585
Sau3AI GATC 3 cut(s) 177, 214, 340
SchI GAGTC 3 cut(s) 99, 734, 752
ScrFI CCNGG 2 cut(s) 707, 721
SduI GDGCHC 1 cut(s) 618
SetI ASST 8 cut(s) 13, 198, 261, 398, 421, 535, 623, 647
SfaNI GCATC 1 cut(s) 695
Sfr274I CTCGAG 1 cut(s) 862
SlaI CTCGAG 1 cut(s) 862
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
SsiI CCGC 1 cut(s) 667
SspI AATATT 2 cut(s) 142, 331
SspMI CTAG 1 cut(s) 876
StyD4I CCNGG 2 cut(s) 705, 719
StyI CCWWGG 2 cut(s) 444, 744
TaaI ACNGT 2 cut(s) 434, 626
TaqI TCGA 1 cut(s) 863
TaqII GACCGA 1 cut(s) 587
TatI WGTACW 2 cut(s) 127, 346
TfiI GAWTC 3 cut(s) 239, 409, 492
Tru1I TTAA 2 cut(s) 378, 816
Tru9I TTAA 2 cut(s) 378, 816
TscAI CASTG 3 cut(s) 180, 270, 616
TseFI GTSAC 4 cut(s) 478, 568, 771, 883
TseI GCWGC 2 cut(s) 8, 584
Tsp45I GTSAC 4 cut(s) 478, 568, 771, 883
TspDTI ATGAA 3 cut(s) 297, 527, 708
TspRI CASTG 3 cut(s) 180, 270, 616
Van91I CCANNNNNTGG 2 cut(s) 86, 782
XapI RAATTY 3 cut(s) 221, 274, 807
XceI RCATGY 1 cut(s) 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XhoI CTCGAG 1 cut(s) 862
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.