Prupe.8G151500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0012059
Physical Location & Seq
Reverse (-)
16478599 .. 16481812
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G151500.1

Sequence Viewer

Length: 975 bp
ATGCAAATTTATGAAGGGGTTGAATTTGCGAAACCTTCAATTGATGCAAATCCGAGGAGCTTCAGCCCTAATACTCCGGCCAATAGTCCTTCAGAGAATCCAGGACTAATCTCAATGGGAACGGTGGTTACTTTTCATGGTAAAAACCAGAACTGTAAACAGATGAGAGTTCGTTCATCAAGTGGCTCAAACGGCACAAAGAATTTCATGTCACCGACGATTTCAGCTGCTTCCAAGGTCACTGCGTCTCCAAGAAAGAAAATCTTGGTGGAGAGGAACGAGCCAGTTCGAGCTTCATCGGTCTCATTCTCCGATTTGAAAAGTTCGTCTTTGAATCCAACAGTGGAGGATCCACAGCACATGACTCCGACAACCCAAAAAGACATTGACTCAGAGGAGCTCTTGTGTTCCAAAAACGAACCAGAGGAGGAACCTGTTTGTGTAAAGGCCTCTGAAGAACCTGACTCGGTTAATCTTGATCCGAGTTTCAAGATTAGTCCTCCACCTTGTTGTCCGAAGTCCAGTCCGGTCATAGCACCCCTTGATGATGATCCCGCTGCTCATCCATATGATCCTAAAACCAATTATCTTTCTCCGAGGCCTCAGTTCCTTCATTATAGACCCAACCCAAGAATTGAATATTATCTGAGAAAGGAAAGAGAGGGCAAGAGACTTGAGGATAACTTCATCTCTGGAAGCTCTTCGGACACTGATACTACTGAGGAAACTCAGTCTGAATATTCTCAGAAGGAATTGGAAGATGTTACTTCTGATGCAGTGGTAAAAGAGGAACAGCAGCTACCAGAAGAAAATGAAGAAGAGGAAGAAGAGGAAAAGCAGGGGGTCAATGTGTCTGAACCATGCGACATTAGCATTACCAACACTTTTATGTCAAAGGAGGAGGGTGCTGAAGTAAAATGGTCCTCCAAGACAGGCTTCTTTTGGAAATCAAAGTTCACTGCTTTGCTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

36.09

Weight (kDa)

4.76

Isoelectric Point (pI)

64.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 555
AclWI GGATC 5 cut(s) 344, 357, 473, 545, 566
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 3 cut(s) 6, 23, 202
AcuI CTGAAG 4 cut(s) 46, 75, 474, 930
AgsI TTSAA 6 cut(s) 23, 39, 319, 334, 490, 638
AjnI CCWGG 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 920, 952
AluBI AGCT 6 cut(s) 60, 227, 293, 400, 699, 799
AluI AGCT 6 cut(s) 60, 227, 293, 400, 699, 799
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 3 cut(s) 252, 307, 664
AlwI GGATC 5 cut(s) 344, 357, 473, 545, 566
AoxI GGCC 3 cut(s) 78, 447, 599
ApeKI GCWGC 3 cut(s) 227, 557, 796
ApoI RAATTY 3 cut(s) 6, 23, 202
Asp700I GAANNNNTTC 1 cut(s) 700
AspS9I GGNCC 1 cut(s) 921
AsuHPI GGTGA 1 cut(s) 204
AvaII GGWCC 1 cut(s) 921
BamHI GGATCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 3 cut(s) 214, 544, 808
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 3 cut(s) 252, 307, 664
BfmI CTRYAG 1 cut(s) 971
BisI GCNGC 3 cut(s) 228, 558, 797
BlsI GCNGC 3 cut(s) 229, 559, 798
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 1 cut(s) 921
BmgT120I GGNCC 1 cut(s) 921
BmiI GGNNCC 2 cut(s) 351, 432
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 2 cut(s) 34, 763
BpuEI CTTGAG 1 cut(s) 695
BsaBI GATNNNNATC 2 cut(s) 48, 549
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 3 cut(s) 53, 234, 596
BsaWI WCCGGW 1 cut(s) 526
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 389, 419
Bse1I ACTGG 2 cut(s) 284, 522
Bse8I GATNNNNATC 2 cut(s) 48, 549
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 3 cut(s) 53, 234, 596
BseGI GGATG 1 cut(s) 562
BseJI GATNNNNATC 2 cut(s) 48, 549
BseMII CTCAG 6 cut(s) 405, 617, 638, 711, 743, 758
BseNI ACTGG 2 cut(s) 284, 522
BseRI GAGGAG 4 cut(s) 70, 410, 440, 914
BseXI GCAGC 3 cut(s) 214, 544, 808
BshFI GGCC 3 cut(s) 80, 449, 601
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 2 cut(s) 77, 527
BsmAI GTCTC 3 cut(s) 252, 307, 664
BsmBI CGTCTC 1 cut(s) 252
BsnI GGCC 3 cut(s) 80, 449, 601
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 4 cut(s) 349, 478, 550, 571
BspACI CCGC 1 cut(s) 555
BspANI GGCC 3 cut(s) 80, 449, 601
BspCNI CTCAG 6 cut(s) 404, 616, 639, 712, 742, 757
BspLI GGNNCC 2 cut(s) 351, 432
BspPI GGATC 5 cut(s) 344, 357, 473, 545, 566
BspQI GCTCTTC 1 cut(s) 706
BspTNI GGTCTC 1 cut(s) 307
BsrI ACTGG 2 cut(s) 284, 522
BssECI CCNNGG 3 cut(s) 53, 234, 596
BssMI GATC 4 cut(s) 349, 478, 550, 571
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 3 cut(s) 124, 155, 343
Bst6I CTCTTC 3 cut(s) 706, 813, 822
BstDEI CTNAG 6 cut(s) 391, 603, 647, 720, 729, 744
BstF5I GGATG 1 cut(s) 562
BstKTI GATC 4 cut(s) 352, 481, 553, 574
BstMAI GTCTC 3 cut(s) 252, 307, 664
BstMBI GATC 4 cut(s) 349, 478, 550, 571
BstMWI GCNNNNNNNGC 2 cut(s) 192, 870
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 971
BstV1I GCAGC 3 cut(s) 214, 544, 808
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 3 cut(s) 80, 449, 601
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 3 cut(s) 240, 783, 957
BtsIMutI CAGTG 5 cut(s) 240, 348, 708, 783, 957
Cfr13I GGNCC 1 cut(s) 921
CseI GACGC 1 cut(s) 234
CviAII CATG 4 cut(s) 137, 208, 361, 861
DdeI CTNAG 6 cut(s) 391, 603, 647, 720, 729, 744
DpnI GATC 4 cut(s) 351, 480, 552, 573
DpnII GATC 4 cut(s) 349, 478, 550, 571
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 3 cut(s) 706, 813, 822
EarI CTCTTC 3 cut(s) 706, 813, 822
Ecl136II GAGCTC 1 cut(s) 400
Eco130I CCWWGG 1 cut(s) 234
Eco147I AGGCCT 2 cut(s) 449, 601
Eco24I GRGCYC 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 921
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 4 cut(s) 46, 75, 474, 930
EcoICRI GAGCTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 4 cut(s) 140, 211, 364, 864
FalI AAGNNNNNCTT 6 cut(s) 248, 280, 313, 345, 920, 952
FatI CATG 4 cut(s) 136, 207, 360, 860
FauI CCCGC 1 cut(s) 562
FauNDI CATATG 1 cut(s) 568
Fnu4HI GCNGC 3 cut(s) 228, 558, 797
FokI GGATG 1 cut(s) 549
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 3 cut(s) 228, 558, 797
GluI GCNGC 3 cut(s) 228, 558, 797
HaeIII GGCC 3 cut(s) 80, 449, 601
HapII CCGG 2 cut(s) 77, 527
HgaI GACGC 1 cut(s) 234
Hin1II CATG 4 cut(s) 140, 211, 364, 864
HinfI GANTC 5 cut(s) 97, 334, 364, 389, 464
HpaII CCGG 2 cut(s) 77, 527
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 2 cut(s) 158, 957
Hpy188III TCNNGA 3 cut(s) 476, 490, 693
Hpy8I GTNNAC 2 cut(s) 158, 957
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 5 cut(s) 8, 45, 99, 620, 742
HpyCH4III ACNGT 3 cut(s) 124, 155, 343
HpyCH4V TGCA 3 cut(s) 4, 47, 776
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 870
HpyF3I CTNAG 6 cut(s) 391, 603, 647, 720, 729, 744
Hsp92II CATG 4 cut(s) 140, 211, 364, 864
Kzo9I GATC 4 cut(s) 349, 478, 550, 571
LguI GCTCTTC 1 cut(s) 706
LmnI GCTCC 2 cut(s) 57, 397
Lsp1109I GCAGC 3 cut(s) 214, 544, 808
LweI GCATC 2 cut(s) 34, 763
MaeIII GTNAC 4 cut(s) 127, 210, 238, 763
MalI GATC 4 cut(s) 351, 480, 552, 573
MboI GATC 4 cut(s) 349, 478, 550, 571
MboII GAAGA 8 cut(s) 467, 693, 770, 818, 827, 830, 836, 839
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 7 cut(s) 6, 23, 39, 202, 583, 633, 752
MlyI GAGTC 3 cut(s) 358, 383, 458
MmeI TCCRAC 2 cut(s) 362, 392
MroXI GAANNNNTTC 1 cut(s) 700
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 2 cut(s) 567, 887
MspA1I CMGCKG 2 cut(s) 227, 557
MspI CCGG 2 cut(s) 77, 527
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 192, 870
NdeI CATATG 1 cut(s) 568
NdeII GATC 4 cut(s) 349, 478, 550, 571
NlaIII CATG 4 cut(s) 140, 211, 364, 864
NlaIV GGNNCC 2 cut(s) 351, 432
NmuCI GTSAC 2 cut(s) 210, 238
PceI AGGCCT 2 cut(s) 449, 601
PciSI GCTCTTC 1 cut(s) 706
PdmI GAANNNNTTC 1 cut(s) 700
PfeI GAWTC 2 cut(s) 97, 334
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 3 cut(s) 229, 559, 798
PleI GAGTC 3 cut(s) 358, 383, 458
PpsI GAGTC 3 cut(s) 358, 383, 458
Psp124BI GAGCTC 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 351, 432
PspPI GGNCC 1 cut(s) 921
PsrI GAACNNNNNNTAC 4 cut(s) 112, 144, 783, 815
PsuI RGATCY 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 227
RseI CAYNNNNRTG 2 cut(s) 567, 887
SacI GAGCTC 1 cut(s) 402
SapI GCTCTTC 1 cut(s) 706
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 3 cut(s) 228, 558, 797
Sau3AI GATC 4 cut(s) 349, 478, 550, 571
Sau96I GGNCC 1 cut(s) 921
SchI GAGTC 3 cut(s) 358, 383, 458
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 402
SfaNI GCATC 2 cut(s) 34, 763
SfcI CTRYAG 1 cut(s) 971
SinI GGWCC 1 cut(s) 921
SmiMI CAYNNNNRTG 2 cut(s) 567, 887
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 7 cut(s) 6, 23, 39, 202, 583, 633, 752
SseBI AGGCCT 2 cut(s) 449, 601
SsiI CCGC 1 cut(s) 555
SspI AATATT 2 cut(s) 641, 740
SstI GAGCTC 1 cut(s) 402
StuI AGGCCT 2 cut(s) 449, 601
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 3 cut(s) 124, 155, 343
TaqI TCGA 1 cut(s) 289
TaqII GACCGA 1 cut(s) 289
TasI AATT 7 cut(s) 6, 23, 39, 202, 583, 633, 752
TfiI GAWTC 2 cut(s) 97, 334
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 5 cut(s) 247, 348, 715, 783, 964
TseFI GTSAC 2 cut(s) 210, 238
TseI GCWGC 3 cut(s) 227, 557, 796
Tsp45I GTSAC 2 cut(s) 210, 238
TspDTI ATGAA 8 cut(s) 27, 125, 165, 196, 285, 602, 676, 828
TspRI CASTG 5 cut(s) 247, 348, 715, 783, 964
VpaK11BI GGWCC 1 cut(s) 921
XapI RAATTY 3 cut(s) 6, 23, 202
XmnI GAANNNNTTC 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.