Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016368

Physical Location & Seq

Genomic Coordinates Reverse (-)

18269599 .. 18270137

Gene Structure 539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTACTTCTTCAGCCCTAGGGATAAGAAGTATCCGAATGGTAAGCTTCCCAGCCGCACAACTGGTGGTGGTAATGGATTTTGGAAGGCAACTGGAATACAAAATGCAGGAAAGCCTTGCACCGACGACAACAGGTTGGATGATTTGGTTCTGTGCAAGGTGTATCCAAGTAAGATGTCTAAGCCTAACCCAAATACTTTGCATGCAAAGAAGACAGAGATGTCAGATTCAGTGCCATTAGAGCAAGACCTTCCGGTGCTTGAAAGATCTGCAGTGACTACAAACCTAGGTGAACTTGTGAACGTGAGCAATGAAAGTGTGCAAGCATGGACACTGAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0036293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070482 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

115

Amino Acids

12.57

Weight (kDa)

8.93

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	1 - 35	5.8e-06	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24230
rosa_chinensis	RchiOBHm_Chr3g0482951
rosa_laevigata	RLG00000023315
rosa_multiflora	Rmu_sc0003351.1_g000008 Rmu_ssc0000175.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243400 Rroxscaffold_3G00243480 Rroxscaffold_6G00398810
rosa_rugosa	Rorug03G0202500 Rorug03G0202600
rosa_samantha	Rh3AG251400 Rh3BG287800 Rh3CG285200 Rh3DG280800
rosa_wichuraiana	Rw3G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
AciI	CCGC	1 cut(s)	55
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	263
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AspA2I	CCTAGG	2 cut(s)	17, 286
AsuHPI	GGTGA	1 cut(s)	302
AvrII	CCTAGG	2 cut(s)	17, 286
BbsI	GAAGAC	1 cut(s)	218
BciVI	GTATCC	2 cut(s)	42, 174
BfaI	CTAG	2 cut(s)	18, 287
BfmI	CTRYAG	1 cut(s)	270
BfuI	GTATCC	2 cut(s)	42, 174
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	55
BlnI	CCTAGG	2 cut(s)	17, 286
BlsI	GCNGC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	17, 286
BsaWI	WCCGGW	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	67, 97
Bse3DI	GCAATG	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	17, 286
BseGI	GGATG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	316
BseNI	ACTGG	2 cut(s)	67, 97
BseYI	CCCAGC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	266
BspACI	CCGC	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	341
BspMAI	CTGCAG	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	67, 97
BssECI	CCNNGG	2 cut(s)	17, 286
BssMI	GATC	1 cut(s)	266
BssT1I	CCWWGG	2 cut(s)	17, 286
BstC8I	GCNNGC	2 cut(s)	204, 324
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuI	GTATCC	2 cut(s)	42, 174
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	3 cut(s)	237, 279, 332
Cac8I	GCNNGC	2 cut(s)	204, 324
CciI	TCATGA	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	203, 327, 342
CviJI	RGCY	5 cut(s)	15, 46, 54, 115, 184
CviKI_1	RGCY	5 cut(s)	15, 46, 54, 115, 184
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	17, 286
EcoT14I	CCWWGG	2 cut(s)	17, 286
ErhI	CCWWGG	2 cut(s)	17, 286
FaeI	CATG	3 cut(s)	206, 330, 345
FaiI	YATR	3 cut(s)	204, 328, 343
FatI	CATG	3 cut(s)	202, 326, 341
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	2 cut(s)	18, 287
GluI	GCNGC	1 cut(s)	55
GsaI	CCCAGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	254
Hin1II	CATG	3 cut(s)	206, 330, 345
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	2 cut(s)	293, 301
Hpy188I	TCNGA	2 cut(s)	36, 226
Hpy188III	TCNNGA	1 cut(s)	342
Hpy8I	GTNNAC	2 cut(s)	293, 301
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	79, 260
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	7 cut(s)	107, 120, 156, 202, 206, 272, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	206, 330, 345
Kzo9I	GATC	1 cut(s)	266
LpnPI	CCDG	6 cut(s)	48, 64, 78, 93, 118, 267
MaeI	CTAG	2 cut(s)	18, 287
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	1 cut(s)	223
MflI	RGATCY	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	117
MspI	CCGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	3 cut(s)	206, 330, 345
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	266
SetI	ASST	7 cut(s)	48, 137, 162, 252, 288, 292, 306
SfcI	CTRYAG	1 cut(s)	270
SphI	GCATGC	1 cut(s)	206
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	18, 287
StyI	CCWWGG	2 cut(s)	17, 286
TaiI	ACGT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	227
TscAI	CASTG	3 cut(s)	237, 279, 339
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	3 cut(s)	237, 279, 339
XceI	RCATGY	1 cut(s)	206
XmaJI	CCTAGG	2 cut(s)	17, 286
XspI	CTAG	2 cut(s)	18, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.