Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016368

Physical Location & Seq

Genomic Coordinates Reverse (-)

20661947 .. 20663106

Gene Structure 1160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTACTTCTTCAGCCCAAGGGATCGGAAGTATCCGAATGGTAAGCTTCCGAGCCGCATAACTGGTGAAGGTGATGGATTATGGAAGGCAACTGGTAAAGACTTGGAAATTTTCAGTCAAAGGTGGAAGTTGGATGATTGGGTTTTGTGCAAGGTGTATCTAAGTAAGATGTCTAAACCTAAACCAAATACTGGGGATGGAGCTAGGGAAAACAGAGATGACAGATTCAGAGCCATTAGAGCAGGATCTTCCGGTGCTCGAAAGCCCTGCGACTCCAAACCTAGCCTTGCTGGAGGAGACAACAACAATGGAACGATCACTACACCAAATGATGGTTCAAATGGATCTGAAAAGGTGATAAATTTGCATAAAAACTTGCATGCAGATCATCAGCAAGACCTTCCATCACTTCAAAACTCTTCGAAGCCCTCTGTTATTAACAGCGTTGGGTCTGCTATTGCCAGTCTTGCCGGCGGTCGAGTGTTTCCTGATTTCCAACAGGTTCCTCGTGGTTTTGGAGCTCAATTTGGGACAAATATAGCTCCCATAAATGGAATCCAAGCACATCAGTCCCCTCATGGAATTGGACCTCATCAATCTCGGCCAAGTTTGGACAATGGCTGCCTCCCTCCATTACCGCTGTGTTATTACTATTATGATGATCGAGGATATAGTTACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045995 GO:0048229 GO:0048316 GO:0048317 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048481 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

227

Amino Acids

24.88

Weight (kDa)

9.24

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	1 - 39	3e-06	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24230
rosa_chinensis	RchiOBHm_Chr3g0482951
rosa_laevigata	RLG00000023315
rosa_multiflora	Rmu_sc0003351.1_g000008 Rmu_ssc0000175.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243400 Rroxscaffold_3G00243480 Rroxscaffold_6G00398810
rosa_rugosa	Rorug03G0202500 Rorug03G0202600
rosa_samantha	Rh3AG251400 Rh3BG287800 Rh3CG285200 Rh3DG280800
rosa_wichuraiana	Rw3G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	191, 332
AciI	CCGC	3 cut(s)	55, 474, 638
AclWI	GGATC	3 cut(s)	30, 253, 352
AcoI	YGGCCR	1 cut(s)	602
AcsI	RAATTY	2 cut(s)	108, 361
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	191, 332, 551
AgsI	TTSAA	2 cut(s)	339, 413
AjuI	GAANNNNNNNTTGG	2 cut(s)	319, 351
AluBI	AGCT	4 cut(s)	46, 203, 521, 542
AluI	AGCT	4 cut(s)	46, 203, 521, 542
Alw21I	GWGCWC	2 cut(s)	259, 523
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	3 cut(s)	30, 253, 352
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	1 cut(s)	621
ApoI	RAATTY	2 cut(s)	108, 361
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	3 cut(s)	77, 83, 367
AsuII	TTCGAA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	523
BauI	CACGAG	1 cut(s)	507
Bbv12I	GWGCWC	2 cut(s)	259, 523
BbvI	GCAGC	1 cut(s)	608
BccI	CCATC	4 cut(s)	68, 191, 326, 412
BcgI	CGANNNNNNTGC	2 cut(s)	249, 283
BciVI	GTATCC	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	2 cut(s)	204, 282
BfuI	GTATCC	1 cut(s)	42
BisI	GCNGC	2 cut(s)	55, 622
BlsI	GCNGC	2 cut(s)	56, 623
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	1 cut(s)	504
BmrI	ACTGGG	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	312
Bpu14I	TTCGAA	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 332, 551
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	4 cut(s)	67, 97, 196, 462
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	139, 202
BseLI	CCNNNNNNNGG	3 cut(s)	191, 332, 551
BseNI	ACTGG	4 cut(s)	67, 97, 196, 462
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	608
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	1 cut(s)	604
BsiEI	CGRYCG	1 cut(s)	478
BsiHKAI	GWGCWC	2 cut(s)	259, 523
BsiSI	CCGG	2 cut(s)	252, 471
BslFI	GGGAC	2 cut(s)	544, 556
BslI	CCNNNNNNNGG	3 cut(s)	191, 332, 551
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	2 cut(s)	544, 556
BsnI	GGCC	1 cut(s)	604
Bsp119I	TTCGAA	1 cut(s)	422
Bsp1286I	GDGCHC	2 cut(s)	259, 523
Bsp143I	GATC	6 cut(s)	22, 245, 315, 344, 385, 661
BspACI	CCGC	3 cut(s)	55, 474, 638
BspANI	GGCC	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	3 cut(s)	30, 253, 352
BspT104I	TTCGAA	1 cut(s)	422
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	4 cut(s)	67, 97, 196, 462
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	6 cut(s)	22, 245, 315, 344, 385, 661
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	507
Bst6I	CTCTTC	1 cut(s)	424
BstBI	TTCGAA	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	381, 472
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	139, 202
BstKTI	GATC	6 cut(s)	25, 248, 318, 347, 388, 664
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	6 cut(s)	22, 245, 315, 344, 385, 661
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 467
BstNSI	RCATGY	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	608
BstX2I	RGATCY	2 cut(s)	245, 344
BstYI	RGATCY	2 cut(s)	245, 344
BsuI	GTATCC	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	604
BtsCI	GGATG	2 cut(s)	139, 202
Cac8I	GCNNGC	2 cut(s)	381, 472
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	380, 578
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	6 cut(s)	24, 247, 317, 346, 387, 663
DpnII	GATC	6 cut(s)	22, 245, 315, 344, 385, 661
EaeI	YGGCCR	1 cut(s)	602
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	587
Eco53kI	GAGCTC	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	2 cut(s)	383, 581
FaiI	YATR	9 cut(s)	59, 82, 369, 381, 539, 548, 579, 657, 672
FaqI	GGGAC	2 cut(s)	544, 556
FatI	CATG	2 cut(s)	379, 577
Fnu4HI	GCNGC	2 cut(s)	55, 622
FokI	GGATG	2 cut(s)	146, 209
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	2 cut(s)	55, 622
FspBI	CTAG	2 cut(s)	204, 282
GluI	GCNGC	2 cut(s)	55, 622
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	2 cut(s)	252, 471
Hin1II	CATG	2 cut(s)	383, 581
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	3 cut(s)	225, 272, 555
HpaII	CCGG	2 cut(s)	252, 471
HphI	GGTGA	3 cut(s)	77, 83, 367
Hpy188I	TCNGA	5 cut(s)	27, 36, 51, 230, 349
Hpy188III	TCNNGA	1 cut(s)	488
HpyAV	CCTTC	3 cut(s)	62, 79, 410
HpyCH4V	TGCA	4 cut(s)	150, 367, 379, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 467
HpyF3I	CTNAG	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	383, 581
KroI	GCCGGC	1 cut(s)	470
KroNI	GCCGGC	1 cut(s)	472
Kzo9I	GATC	6 cut(s)	22, 245, 315, 344, 385, 661
LmnI	GCTCC	3 cut(s)	200, 518, 547
Lsp1109I	GCAGC	1 cut(s)	608
MaeI	CTAG	2 cut(s)	204, 282
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	6 cut(s)	24, 247, 317, 346, 387, 663
MboI	GATC	6 cut(s)	22, 245, 315, 344, 385, 661
MboII	GAAGA	2 cut(s)	240, 411
MflI	RGATCY	2 cut(s)	245, 344
MhlI	GDGCHC	2 cut(s)	259, 523
MluCI	AATT	4 cut(s)	108, 361, 524, 582
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	111, 520
MnlI	CCTC	8 cut(s)	287, 439, 516, 585, 600, 635, 639, 659
MroNI	GCCGGC	1 cut(s)	470
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	640
MspI	CCGG	2 cut(s)	252, 471
MwoI	GCNNNNNNNGC	2 cut(s)	239, 467
NaeI	GCCGGC	1 cut(s)	472
NdeII	GATC	6 cut(s)	22, 245, 315, 344, 385, 661
NgoMIV	GCCGGC	1 cut(s)	470
NlaIII	CATG	2 cut(s)	383, 581
NlaIV	GGNNCC	1 cut(s)	504
NmeAIII	GCCGAG	1 cut(s)	580
NspI	RCATGY	1 cut(s)	383
NspV	TTCGAA	1 cut(s)	422
PaeI	GCATGC	1 cut(s)	383
PdiI	GCCGGC	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	225, 555
PflMI	CCANNNNNTGG	2 cut(s)	191, 332
PkrI	GCNGC	2 cut(s)	56, 623
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	523
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	587
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
PsuI	RGATCY	2 cut(s)	245, 344
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	2 cut(s)	55, 622
Sau3AI	GATC	6 cut(s)	22, 245, 315, 344, 385, 661
Sau96I	GGNCC	1 cut(s)	587
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	259, 523
SfuI	TTCGAA	1 cut(s)	422
SinI	GGWCC	1 cut(s)	587
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	4 cut(s)	108, 361, 524, 582
SsiI	CCGC	3 cut(s)	55, 474, 638
SspMI	CTAG	2 cut(s)	204, 282
SstI	GAGCTC	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	17
TaqI	TCGA	4 cut(s)	259, 422, 478, 664
TasI	AATT	4 cut(s)	108, 361, 524, 582
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	225, 555
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TseI	GCWGC	1 cut(s)	621
Van91I	CCANNNNNTGG	2 cut(s)	191, 332
VpaK11BI	GGWCC	1 cut(s)	587
XapI	RAATTY	2 cut(s)	108, 361
XceI	RCATGY	1 cut(s)	383
XspI	CTAG	2 cut(s)	204, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.