Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000175.1

Orthogroup ID

OG0016368

Physical Location & Seq

Genomic Coordinates Reverse (-)

12968 .. 14176

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000175.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgtgcacttgttattttgttgccggacagagatgcacaaattccgcgaagaggaggcaatgtacttcttcagcccaagggatcggaagtatccgaatgaaggcaactggtaaagacttggaaattttcagtcaaaggcggaaggtaattggaaccaggaagaccctggtcctttatgatctgaaatcaaaacatggagcaaaaaagaccaattggattatgcatgaatacaaaatcgaggaaaacatttcaccatccacaagcactactagagctcctggggacaacaggttggatgattgggttttgtgcaaggtgtatctaagtaagatgtctaaacctaaaccaaatactggggatggagggaaaacagaggtgacagattcagagccattagagcaggatcttccggtgcttgaaagccctgcgactccaaacctaggtgaacaagttaacatgagcaatgaaagtgtgcaagcattatacaatggaatcatgacagtaccatatggctgtgctactggttatgtgtctcaagaggtgacaaatataggtgcaaggtcgcttgctcatcatcaacaaaacctgtcattgctaccaagcttttcgcagcttccagttattaacagtgttagctctgctatttccagccttgctggaggagacaacaacaatggaacgatcactacaccaaatgatggttcaaatggatctgaaaaggtgataaatttgcataaaaaattgcatgcagatcatcagcaagaccttccatcacttcaaaactattcgaagccctctgttattaacagtgttgggtctgctattgccagtcttgccggcggtccagtgtttcctgatttccaacaggttcctcgtggttttggagctcaatttgggacaaatatagcttccataaatggaatccaagcacatcagtcccctcatggaattggacctcatcaatctcggctaagtttggacaatggctgcctccctccattaccgcagtgttattactattatgatgatcgagaatgtagttccttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

349

Amino Acids

37.79

Weight (kDa)

8.3

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24230
rosa_chinensis	RchiOBHm_Chr3g0482951
rosa_laevigata	RLG00000023315
rosa_multiflora	Rmu_sc0003351.1_g000008 Rmu_ssc0000175.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243400 Rroxscaffold_3G00243480 Rroxscaffold_6G00398810
rosa_rugosa	Rorug03G0202500 Rorug03G0202600
rosa_samantha	Rh3AG251400 Rh3BG287800 Rh3CG285200 Rh3DG280800
rosa_wichuraiana	Rw3G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	353, 698
AccII	CGCG	1 cut(s)	47
AciI	CCGC	4 cut(s)	45, 139, 840, 1004
AclWI	GGATC	3 cut(s)	89, 411, 718
AcsI	RAATTY	3 cut(s)	40, 123, 727
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	2 cut(s)	64, 504
AfiI	CCNNNNNNNGG	5 cut(s)	51, 100, 353, 440, 698
AgsI	TTSAA	3 cut(s)	419, 705, 779
AjnI	CCWGG	3 cut(s)	155, 165, 277
AjuI	GAANNNNNNNTTGG	2 cut(s)	685, 717
AluBI	AGCT	6 cut(s)	275, 603, 613, 636, 887, 908
AluI	AGCT	6 cut(s)	275, 603, 613, 636, 887, 908
Alw21I	GWGCWC	3 cut(s)	8, 277, 889
Alw26I	GTCTC	2 cut(s)	537, 657
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	3 cut(s)	89, 411, 718
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	610, 987
ApoI	RAATTY	3 cut(s)	40, 123, 727
AspA2I	CCTAGG	1 cut(s)	439
AspS9I	GGNCC	3 cut(s)	169, 842, 953
AsuHPI	GGTGA	5 cut(s)	243, 388, 455, 553, 733
AsuII	TTCGAA	1 cut(s)	788
AvaII	GGWCC	3 cut(s)	169, 842, 953
AvrII	CCTAGG	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	2 cut(s)	277, 889
BauI	CACGAG	1 cut(s)	873
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	3 cut(s)	8, 277, 889
BbvI	GCAGC	2 cut(s)	622, 974
BccI	CCATC	4 cut(s)	262, 353, 692, 778
BciT130I	CCWGG	3 cut(s)	157, 167, 279
BciVI	GTATCC	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	537, 657
BfaI	CTAG	2 cut(s)	270, 440
BfuI	GTATCC	1 cut(s)	101
BisI	GCNGC	2 cut(s)	611, 988
BlnI	CCTAGG	1 cut(s)	439
BlsI	GCNGC	2 cut(s)	612, 989
Bme1390I	CCNGG	3 cut(s)	157, 167, 279
Bme18I	GGWCC	3 cut(s)	169, 842, 953
BmgT120I	GGNCC	3 cut(s)	169, 842, 953
BmiI	GGNNCC	2 cut(s)	154, 870
BmrFI	CCNGG	3 cut(s)	157, 167, 279
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	363
BoxI	GACNNNNGTC	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	519
BsaJI	CCNNGG	4 cut(s)	76, 165, 278, 439
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 259, 289
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 100, 353, 440, 698
Bse118I	RCCGGY	1 cut(s)	836
Bse1I	ACTGG	6 cut(s)	112, 358, 526, 617, 828, 845
Bse3DI	GCAATG	3 cut(s)	65, 469, 590
BseBI	CCWGG	3 cut(s)	157, 167, 279
BseDI	CCNNGG	4 cut(s)	76, 165, 278, 439
BseGI	GGATG	3 cut(s)	254, 301, 364
BseLI	CCNNNNNNNGG	5 cut(s)	51, 100, 353, 440, 698
BseMI	GCAATG	3 cut(s)	65, 469, 590
BseNI	ACTGG	6 cut(s)	112, 358, 526, 617, 828, 845
BseRI	GAGGAG	2 cut(s)	67, 675
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	622, 974
Bsh1236I	CGCG	1 cut(s)	47
BsiHKAI	GWGCWC	3 cut(s)	8, 277, 889
BsiSI	CCGG	3 cut(s)	24, 410, 837
BslFI	GGGAC	3 cut(s)	296, 910, 922
BslI	CCNNNNNNNGG	5 cut(s)	51, 100, 353, 440, 698
BsmAI	GTCTC	2 cut(s)	537, 657
BsmFI	GGGAC	3 cut(s)	296, 910, 922
Bsp119I	TTCGAA	1 cut(s)	788
Bsp1286I	GDGCHC	3 cut(s)	8, 277, 889
Bsp143I	GATC	7 cut(s)	81, 178, 403, 681, 710, 751, 1027
BspACI	CCGC	4 cut(s)	45, 139, 840, 1004
BspFNI	CGCG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	154, 870
BspPI	GGATC	3 cut(s)	89, 411, 718
BspT104I	TTCGAA	1 cut(s)	788
BsrDI	GCAATG	3 cut(s)	65, 469, 590
BsrFI	RCCGGY	1 cut(s)	836
BsrI	ACTGG	6 cut(s)	112, 358, 526, 617, 828, 845
BssAI	RCCGGY	1 cut(s)	836
BssECI	CCNNGG	4 cut(s)	76, 165, 278, 439
BssMI	GATC	7 cut(s)	81, 178, 403, 681, 710, 751, 1027
BssSI	CACGAG	1 cut(s)	873
BssT1I	CCWWGG	2 cut(s)	76, 439
Bst2BI	CACGAG	1 cut(s)	873
Bst2UI	CCWGG	3 cut(s)	157, 167, 279
Bst4CI	ACNGT	3 cut(s)	502, 629, 809
Bst6I	CTCTTC	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	788
BstC8I	GCNNGC	4 cut(s)	477, 567, 747, 838
BstDEI	CTNAG	2 cut(s)	323, 971
BstF5I	GGATG	3 cut(s)	254, 301, 364
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	7 cut(s)	84, 181, 406, 684, 713, 754, 1030
BstMAI	GTCTC	2 cut(s)	537, 657
BstMBI	GATC	7 cut(s)	81, 178, 403, 681, 710, 751, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 833
BstNI	CCWGG	3 cut(s)	157, 167, 279
BstNSI	RCATGY	1 cut(s)	749
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSCI	CCNGG	3 cut(s)	155, 165, 277
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	622, 974
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	2 cut(s)	403, 710
BstYI	RGATCY	2 cut(s)	403, 710
BsuI	GTATCC	1 cut(s)	101
BtsCI	GGATG	3 cut(s)	254, 301, 364
BtsI	GCAGTG	1 cut(s)	1013
BtsIMutI	CAGTG	4 cut(s)	634, 814, 852, 1013
Cac8I	GCNNGC	4 cut(s)	477, 567, 747, 838
CciI	TCATGA	1 cut(s)	495
Cfr10I	RCCGGY	1 cut(s)	836
Cfr13I	GGNCC	3 cut(s)	169, 842, 953
Csp6I	GTAC	2 cut(s)	63, 503
CviAII	CATG	6 cut(s)	194, 224, 457, 496, 746, 944
CviQI	GTAC	2 cut(s)	63, 503
DdeI	CTNAG	2 cut(s)	323, 971
DpnI	GATC	7 cut(s)	83, 180, 405, 683, 712, 753, 1029
DpnII	GATC	7 cut(s)	81, 178, 403, 681, 710, 751, 1027
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	2 cut(s)	275, 887
Eco130I	CCWWGG	2 cut(s)	76, 439
Eco24I	GRGCYC	2 cut(s)	277, 889
Eco47I	GGWCC	3 cut(s)	169, 842, 953
Eco53kI	GAGCTC	2 cut(s)	275, 887
Eco57I	CTGAAG	1 cut(s)	54
EcoICRI	GAGCTC	2 cut(s)	275, 887
EcoRII	CCWGG	3 cut(s)	155, 165, 277
EcoT14I	CCWWGG	2 cut(s)	76, 439
EcoT22I	ATGCAT	1 cut(s)	225
EcoT38I	GRGCYC	2 cut(s)	277, 889
ErhI	CCWWGG	2 cut(s)	76, 439
FaeI	CATG	6 cut(s)	197, 227, 460, 499, 749, 947
FaqI	GGGAC	3 cut(s)	296, 910, 922
FatI	CATG	6 cut(s)	193, 223, 456, 495, 745, 943
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	611, 988
FokI	GGATG	3 cut(s)	241, 308, 371
FriOI	GRGCYC	2 cut(s)	277, 889
Fsp4HI	GCNGC	2 cut(s)	611, 988
FspBI	CTAG	2 cut(s)	270, 440
GluI	GCNGC	2 cut(s)	611, 988
GsuI	CTGGAG	1 cut(s)	678
HapII	CCGG	3 cut(s)	24, 410, 837
Hin1II	CATG	6 cut(s)	197, 227, 460, 499, 749, 947
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	601
HinfI	GANTC	4 cut(s)	383, 430, 492, 921
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	3 cut(s)	24, 410, 837
HphI	GGTGA	5 cut(s)	243, 388, 455, 553, 733
Hpy166II	GTNNAC	3 cut(s)	6, 446, 454
Hpy188I	TCNGA	5 cut(s)	86, 95, 183, 388, 715
Hpy188III	TCNNGA	4 cut(s)	496, 536, 854, 1031
Hpy8I	GTNNAC	3 cut(s)	6, 446, 454
HpyAV	CCTTC	3 cut(s)	94, 136, 776
HpyCH4III	ACNGT	3 cut(s)	502, 629, 809
HpyCH4V	TGCA	9 cut(s)	6, 36, 223, 312, 475, 557, 733, 745, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 833
HpyF3I	CTNAG	2 cut(s)	323, 971
Hsp92II	CATG	6 cut(s)	197, 227, 460, 499, 749, 947
KroI	GCCGGC	1 cut(s)	836
KroNI	GCCGGC	1 cut(s)	838
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	7 cut(s)	81, 178, 403, 681, 710, 751, 1027
LmnI	GCTCC	3 cut(s)	197, 280, 884
Lsp1109I	GCAGC	2 cut(s)	622, 974
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	270, 440
MaeIII	GTNAC	2 cut(s)	376, 541
MalI	GATC	7 cut(s)	83, 180, 405, 683, 712, 753, 1029
MboI	GATC	7 cut(s)	81, 178, 403, 681, 710, 751, 1027
MboII	GAAGA	4 cut(s)	60, 61, 172, 398
MfeI	CAATTG	1 cut(s)	211
MflI	RGATCY	2 cut(s)	403, 710
MhlI	GDGCHC	3 cut(s)	8, 277, 889
MluCI	AATT	8 cut(s)	40, 123, 147, 211, 727, 740, 890, 948
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	2 cut(s)	273, 886
Mph1103I	ATGCAT	1 cut(s)	225
MroNI	GCCGGC	1 cut(s)	836
MseI	TTAA	3 cut(s)	453, 624, 804
MspI	CCGG	3 cut(s)	24, 410, 837
MspR9I	CCNGG	3 cut(s)	157, 167, 279
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	3 cut(s)	157, 167, 279
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	397, 833
NaeI	GCCGGC	1 cut(s)	838
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	7 cut(s)	81, 178, 403, 681, 710, 751, 1027
NgoMIV	GCCGGC	1 cut(s)	836
NlaIII	CATG	6 cut(s)	197, 227, 460, 499, 749, 947
NlaIV	GGNNCC	2 cut(s)	154, 870
NmeAIII	GCCGAG	1 cut(s)	946
NmuCI	GTSAC	2 cut(s)	376, 541
NsiI	ATGCAT	1 cut(s)	225
NspI	RCATGY	1 cut(s)	749
NspV	TTCGAA	1 cut(s)	788
PaeI	GCATGC	1 cut(s)	749
PagI	TCATGA	1 cut(s)	495
PdiI	GCCGGC	1 cut(s)	838
PfeI	GAWTC	3 cut(s)	383, 492, 921
PflMI	CCANNNNNTGG	2 cut(s)	353, 698
PkrI	GCNGC	2 cut(s)	612, 989
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PshAI	GACNNNNGTC	1 cut(s)	167
Psp124BI	GAGCTC	2 cut(s)	277, 889
Psp6I	CCWGG	3 cut(s)	155, 165, 277
PspGI	CCWGG	3 cut(s)	155, 165, 277
PspN4I	GGNNCC	2 cut(s)	154, 870
PspPI	GGNCC	3 cut(s)	169, 842, 953
PsrI	GAACNNNNNNTAC	2 cut(s)	670, 702
PsuI	RGATCY	2 cut(s)	403, 710
RsaI	GTAC	2 cut(s)	64, 504
RsaNI	GTAC	2 cut(s)	63, 503
SacI	GAGCTC	2 cut(s)	277, 889
SaqAI	TTAA	3 cut(s)	453, 624, 804
SatI	GCNGC	2 cut(s)	611, 988
Sau3AI	GATC	7 cut(s)	81, 178, 403, 681, 710, 751, 1027
Sau96I	GGNCC	3 cut(s)	169, 842, 953
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	3 cut(s)	157, 167, 279
SduI	GDGCHC	3 cut(s)	8, 277, 889
SfaNI	GCATC	1 cut(s)	23
SfuI	TTCGAA	1 cut(s)	788
SinI	GGWCC	3 cut(s)	169, 842, 953
SmlI	CTYRAG	1 cut(s)	534
SmoI	CTYRAG	1 cut(s)	534
SphI	GCATGC	1 cut(s)	749
Sse9I	AATT	8 cut(s)	40, 123, 147, 211, 727, 740, 890, 948
SsiI	CCGC	4 cut(s)	45, 139, 840, 1004
SspMI	CTAG	2 cut(s)	270, 440
SstI	GAGCTC	2 cut(s)	277, 889
StyD4I	CCNGG	3 cut(s)	155, 165, 277
StyI	CCWWGG	2 cut(s)	76, 439
TaaI	ACNGT	3 cut(s)	502, 629, 809
TaqI	TCGA	3 cut(s)	237, 788, 1030
TasI	AATT	8 cut(s)	40, 123, 147, 211, 727, 740, 890, 948
TatI	WGTACW	1 cut(s)	62
TfiI	GAWTC	3 cut(s)	383, 492, 921
Tru1I	TTAA	3 cut(s)	453, 624, 804
Tru9I	TTAA	3 cut(s)	453, 624, 804
TscAI	CASTG	4 cut(s)	634, 814, 852, 1013
TseFI	GTSAC	2 cut(s)	376, 541
TseI	GCWGC	2 cut(s)	610, 987
Tsp45I	GTSAC	2 cut(s)	376, 541
TspDTI	ATGAA	3 cut(s)	113, 240, 480
TspRI	CASTG	4 cut(s)	634, 814, 852, 1013
Van91I	CCANNNNNTGG	2 cut(s)	353, 698
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	3 cut(s)	169, 842, 953
XapI	RAATTY	3 cut(s)	40, 123, 727
XceI	RCATGY	1 cut(s)	749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmaJI	CCTAGG	1 cut(s)	439
XspI	CTAG	2 cut(s)	270, 440
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.