Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0016368

Physical Location & Seq

Genomic Coordinates Forward (+)

28719302 .. 28720245

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG285200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCATGAATACAAAATCGAGGAAAACATTTCACCATCCACAAGCACTACTAGAGCTCCTGGGGACAACAGGTTGGATGATTGGGTTTTGTGCAAGGTGTATCTAAGTAAGATGTCTAAACCTAAACCAAATACTGGGGATGGAGGGAAAACAGAGGTGACAGATTCAGAGCCATTAGAGCAGGATCTTCCAGTGCTTGAAAGCCCTGCGACTCCAAACCTAGGTGAACAAGTTAACGTGAGCAATGAAAGTGTGCAAGCATTATACAATGGAATCATGACAGTACCATATGGCTGTGCTACTGGTTATGTGTCTCAAGAGGTGACAAATATAGGTGCAAGCCTTGCTGGAGGAGACAACAACAATGGAACGATCACTACACCAAATGATGGTTCAAATGGATCTGAAAAGGTGATAAATTTGCATAAAAAATTGCATGCAGATCATCAGCAAGACCTTCCATCACTTCAAAACTATTCGAAGCCCTCTGTTATTAACAGTGTTGGGTCTGCTATTGCCAGTCTTGCCGGCGGTCCAGTGTTTCCTGATTTCCAACAGGTTCCTCGTGGTTTTGGAGCTCAATTTGGGACAAATATAGCTTCCATAAATGGAATCCAAGCACATCAGTCCCCTCATGGAATTGGACCTCATCAATCTCGGCTAAGTTTGGACAATGGCTGCCTCCCTCCATTACCGCAGTGTTATTACTATTATGATGATCGAGAATGTAGTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

246

Amino Acids

26.34

Weight (kDa)

4.94

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24230
rosa_chinensis	RchiOBHm_Chr3g0482951
rosa_laevigata	RLG00000023315
rosa_multiflora	Rmu_sc0003351.1_g000008 Rmu_ssc0000175.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243400 Rroxscaffold_3G00243480 Rroxscaffold_6G00398810
rosa_rugosa	Rorug03G0202500 Rorug03G0202600
rosa_samantha	Rh3AG251400 Rh3BG287800 Rh3CG285200 Rh3DG280800
rosa_wichuraiana	Rw3G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	134, 389
AciI	CCGC	2 cut(s)	531, 695
AclWI	GGATC	2 cut(s)	192, 409
AcsI	RAATTY	1 cut(s)	418
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	3 cut(s)	134, 221, 389
AgsI	TTSAA	3 cut(s)	200, 396, 470
AjnI	CCWGG	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	376, 408
AluBI	AGCT	3 cut(s)	56, 578, 599
AluI	AGCT	3 cut(s)	56, 578, 599
Alw21I	GWGCWC	2 cut(s)	58, 580
Alw26I	GTCTC	2 cut(s)	318, 348
AlwI	GGATC	2 cut(s)	192, 409
ApeKI	GCWGC	1 cut(s)	678
ApoI	RAATTY	1 cut(s)	418
AspA2I	CCTAGG	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	533, 644
AsuHPI	GGTGA	5 cut(s)	24, 169, 236, 334, 424
AsuII	TTCGAA	1 cut(s)	479
AvaII	GGWCC	2 cut(s)	533, 644
AvrII	CCTAGG	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	58, 580
BauI	CACGAG	1 cut(s)	564
Bbv12I	GWGCWC	2 cut(s)	58, 580
BbvI	GCAGC	1 cut(s)	665
BccI	CCATC	4 cut(s)	43, 134, 383, 469
BciT130I	CCWGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	318, 348
BfaI	CTAG	2 cut(s)	51, 221
BisI	GCNGC	1 cut(s)	679
BlnI	CCTAGG	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	680
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	2 cut(s)	533, 644
BmgT120I	GGNCC	2 cut(s)	533, 644
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	479
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	59, 220
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 221, 389
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	5 cut(s)	139, 191, 307, 519, 536
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	59, 220
BseGI	GGATG	3 cut(s)	35, 82, 145
BseLI	CCNNNNNNNGG	3 cut(s)	134, 221, 389
BseMI	GCAATG	1 cut(s)	250
BseNI	ACTGG	5 cut(s)	139, 191, 307, 519, 536
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	665
BsiHKAI	GWGCWC	2 cut(s)	58, 580
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	3 cut(s)	77, 601, 613
BslI	CCNNNNNNNGG	3 cut(s)	134, 221, 389
BsmAI	GTCTC	2 cut(s)	318, 348
BsmFI	GGGAC	3 cut(s)	77, 601, 613
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	58, 580
Bsp143I	GATC	5 cut(s)	184, 372, 401, 442, 718
BspACI	CCGC	2 cut(s)	531, 695
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	561
BspPI	GGATC	2 cut(s)	192, 409
BspT104I	TTCGAA	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	5 cut(s)	139, 191, 307, 519, 536
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	59, 220
BssMI	GATC	5 cut(s)	184, 372, 401, 442, 718
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	220
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	283, 500
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	4 cut(s)	258, 340, 438, 529
BstDEI	CTNAG	2 cut(s)	104, 662
BstF5I	GGATG	3 cut(s)	35, 82, 145
BstKTI	GATC	5 cut(s)	187, 375, 404, 445, 721
BstMAI	GTCTC	2 cut(s)	318, 348
BstMBI	GATC	5 cut(s)	184, 372, 401, 442, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 344, 524
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	665
BstX2I	RGATCY	2 cut(s)	184, 401
BstYI	RGATCY	2 cut(s)	184, 401
BtsCI	GGATG	3 cut(s)	35, 82, 145
BtsI	GCAGTG	1 cut(s)	704
BtsIMutI	CAGTG	4 cut(s)	198, 505, 543, 704
Cac8I	GCNNGC	4 cut(s)	258, 340, 438, 529
CciI	TCATGA	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	533, 644
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	4 cut(s)	5, 277, 437, 635
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	2 cut(s)	104, 662
DpnI	GATC	5 cut(s)	186, 374, 403, 444, 720
DpnII	GATC	5 cut(s)	184, 372, 401, 442, 718
Ecl136II	GAGCTC	2 cut(s)	56, 578
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	58, 580
Eco47I	GGWCC	2 cut(s)	533, 644
Eco53kI	GAGCTC	2 cut(s)	56, 578
EcoICRI	GAGCTC	2 cut(s)	56, 578
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	58, 580
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	4 cut(s)	8, 280, 440, 638
FaqI	GGGAC	3 cut(s)	77, 601, 613
FatI	CATG	4 cut(s)	4, 276, 436, 634
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	679
FokI	GGATG	3 cut(s)	22, 89, 152
FriOI	GRGCYC	2 cut(s)	58, 580
Fsp4HI	GCNGC	1 cut(s)	679
FspBI	CTAG	2 cut(s)	51, 221
GluI	GCNGC	1 cut(s)	679
GsuI	CTGGAG	1 cut(s)	369
HapII	CCGG	1 cut(s)	528
Hin1II	CATG	4 cut(s)	8, 280, 440, 638
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	4 cut(s)	164, 211, 273, 612
HpaI	GTTAAC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	5 cut(s)	24, 169, 236, 334, 424
Hpy166II	GTNNAC	2 cut(s)	227, 235
Hpy188I	TCNGA	2 cut(s)	169, 406
Hpy188III	TCNNGA	4 cut(s)	277, 317, 545, 722
Hpy8I	GTNNAC	2 cut(s)	227, 235
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	2 cut(s)	283, 500
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	7 cut(s)	4, 93, 256, 338, 424, 436, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 344, 524
HpyF3I	CTNAG	2 cut(s)	104, 662
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	8, 280, 440, 638
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	184, 372, 401, 442, 718
LmnI	GCTCC	2 cut(s)	61, 575
Lsp1109I	GCAGC	1 cut(s)	665
MaeI	CTAG	2 cut(s)	51, 221
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	157, 322
MalI	GATC	5 cut(s)	186, 374, 403, 444, 720
MboI	GATC	5 cut(s)	184, 372, 401, 442, 718
MboII	GAAGA	1 cut(s)	179
MflI	RGATCY	2 cut(s)	184, 401
MhlI	GDGCHC	2 cut(s)	58, 580
MluCI	AATT	4 cut(s)	418, 431, 581, 639
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	54, 577
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	527
MseI	TTAA	2 cut(s)	234, 495
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	178, 344, 524
NaeI	GCCGGC	1 cut(s)	529
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	5 cut(s)	184, 372, 401, 442, 718
NgoMIV	GCCGGC	1 cut(s)	527
NlaIII	CATG	4 cut(s)	8, 280, 440, 638
NlaIV	GGNNCC	1 cut(s)	561
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	2 cut(s)	157, 322
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	440
NspV	TTCGAA	1 cut(s)	479
PaeI	GCATGC	1 cut(s)	440
PagI	TCATGA	1 cut(s)	276
PdiI	GCCGGC	1 cut(s)	529
PfeI	GAWTC	3 cut(s)	164, 273, 612
PflMI	CCANNNNNTGG	2 cut(s)	134, 389
PkrI	GCNGC	1 cut(s)	680
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp124BI	GAGCTC	2 cut(s)	58, 580
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	2 cut(s)	533, 644
PsrI	GAACNNNNNNTAC	2 cut(s)	361, 393
PsuI	RGATCY	2 cut(s)	184, 401
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SacI	GAGCTC	2 cut(s)	58, 580
SaqAI	TTAA	2 cut(s)	234, 495
SatI	GCNGC	1 cut(s)	679
Sau3AI	GATC	5 cut(s)	184, 372, 401, 442, 718
Sau96I	GGNCC	2 cut(s)	533, 644
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	58, 580
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	2 cut(s)	533, 644
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SphI	GCATGC	1 cut(s)	440
Sse9I	AATT	4 cut(s)	418, 431, 581, 639
SsiI	CCGC	2 cut(s)	531, 695
SspMI	CTAG	2 cut(s)	51, 221
SstI	GAGCTC	2 cut(s)	58, 580
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	283, 500
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	3 cut(s)	18, 479, 721
TasI	AATT	4 cut(s)	418, 431, 581, 639
TfiI	GAWTC	3 cut(s)	164, 273, 612
Tru1I	TTAA	2 cut(s)	234, 495
Tru9I	TTAA	2 cut(s)	234, 495
TscAI	CASTG	4 cut(s)	198, 505, 543, 704
TseFI	GTSAC	2 cut(s)	157, 322
TseI	GCWGC	1 cut(s)	678
Tsp45I	GTSAC	2 cut(s)	157, 322
TspDTI	ATGAA	2 cut(s)	21, 261
TspRI	CASTG	4 cut(s)	198, 505, 543, 704
Van91I	CCANNNNNTGG	2 cut(s)	134, 389
VpaK11BI	GGWCC	2 cut(s)	533, 644
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	440
XmaJI	CCTAGG	1 cut(s)	220
XspI	CTAG	2 cut(s)	51, 221
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.