Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0016368

Physical Location & Seq

Genomic Coordinates Reverse (-)

17898929 .. 17901345

Gene Structure 2417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0202600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGAAATGCAACCCTAGCCGAAGCTTATAAAACCCTGAGGATCCCATTTGAGGCTCCCACAAACAAGAGCCGCCGCAAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCGGACCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAAGAGTCGACTCTTCATCTGGTGCTGAGGCTCCGTGGAGGTATCATCGAGCCTTCTTTGATGGCCTTGGCTCGCAAGTACAATCAGGAGAAGATGATTTGCAGAAAATGTTATGCTCGTCTGCACCCAAGGGCTGTCAACTGTAGGAAGAAGAAGTGTGGCCACAGCAATCAGTTGAGGCCAAAGAAGAAGATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.83

Weight (kDa)

10.15

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	28 - 98	1.5e-17	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	30 - 101	1.8e-32	Ubiquitin family
Ribosomal_L40e	PF01020	105 - 154	5.5e-31	Ribosomal L40e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24230
rosa_chinensis	RchiOBHm_Chr3g0482951
rosa_laevigata	RLG00000023315
rosa_multiflora	Rmu_sc0003351.1_g000008 Rmu_ssc0000175.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243400 Rroxscaffold_3G00243480 Rroxscaffold_6G00398810
rosa_rugosa	Rorug03G0202500 Rorug03G0202600
rosa_samantha	Rh3AG251400 Rh3BG287800 Rh3CG285200 Rh3DG280800
rosa_wichuraiana	Rw3G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	275
AciI	CCGC	3 cut(s)	73, 76, 241
AclWI	GGATC	3 cut(s)	37, 50, 163
AcoI	YGGCCR	3 cut(s)	238, 249, 427
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	4 cut(s)	52, 108, 178, 247
AluBI	AGCT	2 cut(s)	26, 229
AluI	AGCT	2 cut(s)	26, 229
AlwI	GGATC	3 cut(s)	37, 50, 163
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	6 cut(s)	162, 238, 249, 330, 427, 446
ApeKI	GCWGC	3 cut(s)	138, 202, 226
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	429
BamHI	GGATCC	1 cut(s)	42
BbsI	GAAGAC	3 cut(s)	104, 119, 240
BbvCI	CCTCAGC	1 cut(s)	293
BbvI	GCAGC	3 cut(s)	150, 214, 238
BccI	CCATC	3 cut(s)	125, 155, 322
BceAI	ACGGC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	194
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	6 cut(s)	73, 76, 139, 203, 227, 241
BlsI	GCNGC	6 cut(s)	74, 77, 140, 204, 228, 242
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	3 cut(s)	44, 57, 299
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	72, 195
BpiI	GAAGAC	3 cut(s)	104, 119, 240
Bpu10I	CCTNAGC	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	194
BsaJI	CCNNGG	5 cut(s)	192, 246, 301, 333, 395
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 108, 178, 247
Bse21I	CCTNAGG	1 cut(s)	38
BseDI	CCNNGG	5 cut(s)	192, 246, 301, 333, 395
BseGI	GGATG	2 cut(s)	186, 261
BseLI	CCNNNNNNNGG	4 cut(s)	52, 108, 178, 247
BseMII	CTCAG	2 cut(s)	29, 284
BseX3I	CGGCCG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	150, 214, 238
BsgI	GTGCAG	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	6 cut(s)	164, 240, 251, 332, 429, 448
BsiEI	CGRYCG	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	194, 219
BslI	CCNNNNNNNGG	4 cut(s)	52, 108, 178, 247
BsnI	GGCC	6 cut(s)	164, 240, 251, 332, 429, 448
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	42, 168, 459
BspACI	CCGC	3 cut(s)	73, 76, 241
BspANI	GGCC	6 cut(s)	164, 240, 251, 332, 429, 448
BspCNI	CTCAG	2 cut(s)	30, 285
BspLI	GGNNCC	3 cut(s)	44, 57, 299
BspPI	GGATC	3 cut(s)	37, 50, 163
BssECI	CCNNGG	5 cut(s)	192, 246, 301, 333, 395
BssMI	GATC	3 cut(s)	42, 168, 459
BssT1I	CCWWGG	3 cut(s)	246, 333, 395
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	2 cut(s)	38, 293
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	2 cut(s)	186, 261
BstKTI	GATC	3 cut(s)	45, 171, 462
BstMBI	GATC	3 cut(s)	42, 168, 459
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	3 cut(s)	150, 214, 238
BstV2I	GAAGAC	3 cut(s)	104, 119, 240
BstX2I	RGATCY	2 cut(s)	42, 168
BstYI	RGATCY	2 cut(s)	42, 168
BstZI	CGGCCG	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	38
BsuRI	GGCC	6 cut(s)	164, 240, 251, 332, 429, 448
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	186, 261
Cac8I	GCNNGC	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	346
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	38, 293
DpnI	GATC	3 cut(s)	44, 170, 461
DpnII	GATC	3 cut(s)	42, 168, 459
EaeI	YGGCCR	3 cut(s)	238, 249, 427
EagI	CGGCCG	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EclXI	CGGCCG	1 cut(s)	238
Eco130I	CCWWGG	3 cut(s)	246, 333, 395
Eco47I	GGWCC	1 cut(s)	196
Eco52I	CGGCCG	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	125
EcoT14I	CCWWGG	3 cut(s)	246, 333, 395
ErhI	CCWWGG	3 cut(s)	246, 333, 395
FaiI	YATR	2 cut(s)	30, 381
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	6 cut(s)	73, 76, 139, 203, 227, 241
FokI	GGATG	2 cut(s)	173, 248
Fsp4HI	GCNGC	6 cut(s)	73, 76, 139, 203, 227, 241
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	6 cut(s)	73, 76, 139, 203, 227, 241
HaeIII	GGCC	6 cut(s)	164, 240, 251, 332, 429, 448
HapII	CCGG	2 cut(s)	194, 219
HincII	GTYRAC	2 cut(s)	276, 406
HindII	GTYRAC	2 cut(s)	276, 406
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	2 cut(s)	272, 277
HpaII	CCGG	2 cut(s)	194, 219
Hpy166II	GTNNAC	2 cut(s)	276, 406
Hpy188III	TCNNGA	5 cut(s)	94, 125, 133, 265, 353
Hpy8I	GTNNAC	2 cut(s)	276, 406
HpyAV	CCTTC	2 cut(s)	176, 330
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	4 cut(s)	11, 85, 369, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	38, 293
Kzo9I	GATC	3 cut(s)	42, 168, 459
LmnI	GCTCC	2 cut(s)	61, 303
LpnPI	CCDG	7 cut(s)	50, 207, 212, 232, 272, 278, 338
Lsp1109I	GCAGC	3 cut(s)	150, 214, 238
LweI	GCATC	2 cut(s)	72, 195
MaeI	CTAG	1 cut(s)	17
MalI	GATC	3 cut(s)	44, 170, 461
MboI	GATC	3 cut(s)	42, 168, 459
MboII	GAAGA	8 cut(s)	109, 124, 245, 272, 370, 427, 430, 466
MflI	RGATCY	2 cut(s)	42, 168
MlsI	TGGCCA	1 cut(s)	429
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	2 cut(s)	271, 281
MnlI	CCTC	6 cut(s)	33, 46, 121, 288, 299, 438
Mox20I	TGGCCA	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	429
Msp20I	TGGCCA	1 cut(s)	429
MspI	CCGG	2 cut(s)	194, 219
MspR9I	CCNGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	17
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	3 cut(s)	42, 168, 459
NlaIV	GGNNCC	3 cut(s)	44, 57, 299
PaeR7I	CTCGAG	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	6 cut(s)	74, 77, 140, 204, 228, 242
PleI	GAGTC	2 cut(s)	271, 280
PpsI	GAGTC	2 cut(s)	271, 280
PsiI	TTATAA	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	44, 57, 299
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	42, 168
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	274
SatI	GCNGC	6 cut(s)	73, 76, 139, 203, 227, 241
Sau3AI	GATC	3 cut(s)	42, 168, 459
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	2 cut(s)	271, 281
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	5 cut(s)	28, 132, 231, 248, 310
SfaNI	GCATC	2 cut(s)	72, 195
SfcI	CTRYAG	1 cut(s)	409
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	3 cut(s)	73, 76, 241
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	3 cut(s)	246, 333, 395
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	6 cut(s)	126, 132, 150, 231, 275, 315
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	3 cut(s)	75, 78, 243
TseI	GCWGC	3 cut(s)	138, 202, 226
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	1 cut(s)	290
Tth111I	GACNNNGTC	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.