Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0016368

Physical Location & Seq

Genomic Coordinates Reverse (-)

27822925 .. 27823868

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCATGAATACAAAATCGAGGAAAACATTTCACCATCCACAAGCACTACTAGAGCTCCTGGGGACAACAGGTTGGATGATTGGGTTTTGTGCAAGGTGTATCTAAGTAAGATGTCTAAACCTAAACCAAATACTGGGGATGGAGGGAAAACAGAGGTGACAGATTCAGAGCCATTAGAGCAGGATCTTCCAGTGCTTGAAAGCCCTGCGACTCCAAACCTAGGTGAACTAGTTAACGTGAGCAATGAAAGTGTGCAAGCATTATACAATGGAATCATGACAGTACCATATGGCTGTGCTACTGGTTATGTGTCTCAAGAGGTGACAAATATAGCTTTTTCGCAGCTTCCAGTTATTAACAGTGTTAGCTCTGCTATTTCCAGCCTTGCTGGAGGAGACAACAACAATGGAACGATCACTACACCAAATGATGGTTCAAATGGATCTGAAAAGGTGATAAATTTGCATAAAAAATTGCATGCAGATCATCAGCAAGACCTTCCATCACTTCAAAACTATTCGAAGCCCTCTGTTATTAACAGTGTTGGGTCTGCTATTGCCAGTCTTGCCGGCGGTCCAGTGTTTCCTGATTTCCAACAGGTTCCTCGTGGTTTTGGAGCTCAATTTGGGACAAATATAGCTTCCATAAATGGAATCCAAGCACATCAGTCCCCTCATGGAATTGGACCTCATCAATCTCGGCTAAGTTTGGACAATGGCTGCCTCCCTCCATTACCGCAGTGTTATTACTATTATGATGATCGAGAATGTAGTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

260

Amino Acids

27.79

Weight (kDa)

4.94

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24230
rosa_chinensis	RchiOBHm_Chr3g0482951
rosa_laevigata	RLG00000023315
rosa_multiflora	Rmu_sc0003351.1_g000008 Rmu_ssc0000175.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243400 Rroxscaffold_3G00243480 Rroxscaffold_6G00398810
rosa_rugosa	Rorug03G0202500 Rorug03G0202600
rosa_samantha	Rh3AG251400 Rh3BG287800 Rh3CG285200 Rh3DG280800
rosa_wichuraiana	Rw3G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	134, 431
AciI	CCGC	2 cut(s)	573, 737
AclWI	GGATC	2 cut(s)	192, 451
AcsI	RAATTY	1 cut(s)	460
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	3 cut(s)	134, 221, 431
AgsI	TTSAA	3 cut(s)	200, 438, 512
AhlI	ACTAGT	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
AluBI	AGCT	6 cut(s)	56, 335, 346, 369, 620, 641
AluI	AGCT	6 cut(s)	56, 335, 346, 369, 620, 641
Alw21I	GWGCWC	2 cut(s)	58, 622
Alw26I	GTCTC	2 cut(s)	318, 390
AlwI	GGATC	2 cut(s)	192, 451
ApeKI	GCWGC	2 cut(s)	343, 720
ApoI	RAATTY	1 cut(s)	460
AspA2I	CCTAGG	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	575, 686
AsuHPI	GGTGA	5 cut(s)	24, 169, 236, 334, 466
AsuII	TTCGAA	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	575, 686
AvrII	CCTAGG	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	58, 622
BauI	CACGAG	1 cut(s)	606
Bbv12I	GWGCWC	2 cut(s)	58, 622
BbvI	GCAGC	2 cut(s)	355, 707
BccI	CCATC	4 cut(s)	43, 134, 425, 511
BciT130I	CCWGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	318, 390
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	3 cut(s)	51, 221, 230
BisI	GCNGC	2 cut(s)	344, 721
BlnI	CCTAGG	1 cut(s)	220
BlsI	GCNGC	2 cut(s)	345, 722
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	2 cut(s)	575, 686
BmgT120I	GGNCC	2 cut(s)	575, 686
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	59, 220
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 221, 431
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	6 cut(s)	139, 191, 307, 350, 561, 578
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	59, 220
BseGI	GGATG	3 cut(s)	35, 82, 145
BseLI	CCNNNNNNNGG	3 cut(s)	134, 221, 431
BseMI	GCAATG	1 cut(s)	250
BseNI	ACTGG	6 cut(s)	139, 191, 307, 350, 561, 578
BseRI	GAGGAG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	355, 707
BsiHKAI	GWGCWC	2 cut(s)	58, 622
BsiSI	CCGG	1 cut(s)	570
BslFI	GGGAC	3 cut(s)	77, 643, 655
BslI	CCNNNNNNNGG	3 cut(s)	134, 221, 431
BsmAI	GTCTC	2 cut(s)	318, 390
BsmFI	GGGAC	3 cut(s)	77, 643, 655
Bsp119I	TTCGAA	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	58, 622
Bsp143I	GATC	5 cut(s)	184, 414, 443, 484, 760
BspACI	CCGC	2 cut(s)	573, 737
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	603
BspPI	GGATC	2 cut(s)	192, 451
BspT104I	TTCGAA	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	6 cut(s)	139, 191, 307, 350, 561, 578
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	2 cut(s)	59, 220
BssMI	GATC	5 cut(s)	184, 414, 443, 484, 760
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	220
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	283, 362, 542
BstBI	TTCGAA	1 cut(s)	521
BstC8I	GCNNGC	3 cut(s)	258, 480, 571
BstDEI	CTNAG	2 cut(s)	104, 704
BstF5I	GGATG	3 cut(s)	35, 82, 145
BstKTI	GATC	5 cut(s)	187, 417, 446, 487, 763
BstMAI	GTCTC	2 cut(s)	318, 390
BstMBI	GATC	5 cut(s)	184, 414, 443, 484, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 566
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	355, 707
BstX2I	RGATCY	2 cut(s)	184, 443
BstYI	RGATCY	2 cut(s)	184, 443
BtsCI	GGATG	3 cut(s)	35, 82, 145
BtsI	GCAGTG	1 cut(s)	746
BtsIMutI	CAGTG	5 cut(s)	198, 367, 547, 585, 746
Cac8I	GCNNGC	3 cut(s)	258, 480, 571
CciI	TCATGA	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	575, 686
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	4 cut(s)	5, 277, 479, 677
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	2 cut(s)	104, 704
DpnI	GATC	5 cut(s)	186, 416, 445, 486, 762
DpnII	GATC	5 cut(s)	184, 414, 443, 484, 760
Ecl136II	GAGCTC	2 cut(s)	56, 620
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	58, 622
Eco47I	GGWCC	2 cut(s)	575, 686
Eco53kI	GAGCTC	2 cut(s)	56, 620
EcoICRI	GAGCTC	2 cut(s)	56, 620
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	58, 622
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	4 cut(s)	8, 280, 482, 680
FaqI	GGGAC	3 cut(s)	77, 643, 655
FatI	CATG	4 cut(s)	4, 276, 478, 676
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	344, 721
FokI	GGATG	3 cut(s)	22, 89, 152
FriOI	GRGCYC	2 cut(s)	58, 622
Fsp4HI	GCNGC	2 cut(s)	344, 721
FspBI	CTAG	3 cut(s)	51, 221, 230
GluI	GCNGC	2 cut(s)	344, 721
GsuI	CTGGAG	1 cut(s)	411
HapII	CCGG	1 cut(s)	570
Hin1II	CATG	4 cut(s)	8, 280, 482, 680
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	4 cut(s)	164, 211, 273, 654
HpaI	GTTAAC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	5 cut(s)	24, 169, 236, 334, 466
Hpy166II	GTNNAC	2 cut(s)	227, 235
Hpy188I	TCNGA	2 cut(s)	169, 448
Hpy188III	TCNNGA	4 cut(s)	277, 317, 587, 764
Hpy8I	GTNNAC	2 cut(s)	227, 235
HpyAV	CCTTC	1 cut(s)	509
HpyCH4III	ACNGT	3 cut(s)	283, 362, 542
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	6 cut(s)	4, 93, 256, 466, 478, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 566
HpyF3I	CTNAG	2 cut(s)	104, 704
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	8, 280, 482, 680
KroI	GCCGGC	1 cut(s)	569
KroNI	GCCGGC	1 cut(s)	571
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	184, 414, 443, 484, 760
LmnI	GCTCC	2 cut(s)	61, 617
Lsp1109I	GCAGC	2 cut(s)	355, 707
MaeI	CTAG	3 cut(s)	51, 221, 230
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	157, 322
MalI	GATC	5 cut(s)	186, 416, 445, 486, 762
MboI	GATC	5 cut(s)	184, 414, 443, 484, 760
MboII	GAAGA	1 cut(s)	179
MflI	RGATCY	2 cut(s)	184, 443
MhlI	GDGCHC	2 cut(s)	58, 622
MluCI	AATT	4 cut(s)	460, 473, 623, 681
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	54, 619
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	569
MseI	TTAA	3 cut(s)	234, 357, 537
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	178, 566
NaeI	GCCGGC	1 cut(s)	571
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	5 cut(s)	184, 414, 443, 484, 760
NgoMIV	GCCGGC	1 cut(s)	569
NlaIII	CATG	4 cut(s)	8, 280, 482, 680
NlaIV	GGNNCC	1 cut(s)	603
NmeAIII	GCCGAG	1 cut(s)	679
NmuCI	GTSAC	2 cut(s)	157, 322
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	482
PagI	TCATGA	1 cut(s)	276
PdiI	GCCGGC	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	164, 273, 654
PflMI	CCANNNNNTGG	2 cut(s)	134, 431
PkrI	GCNGC	2 cut(s)	345, 722
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp124BI	GAGCTC	2 cut(s)	58, 622
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	2 cut(s)	575, 686
PsrI	GAACNNNNNNTAC	2 cut(s)	403, 435
PsuI	RGATCY	2 cut(s)	184, 443
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SacI	GAGCTC	2 cut(s)	58, 622
SaqAI	TTAA	3 cut(s)	234, 357, 537
SatI	GCNGC	2 cut(s)	344, 721
Sau3AI	GATC	5 cut(s)	184, 414, 443, 484, 760
Sau96I	GGNCC	2 cut(s)	575, 686
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	58, 622
SfuI	TTCGAA	1 cut(s)	521
SinI	GGWCC	2 cut(s)	575, 686
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	229
SphI	GCATGC	1 cut(s)	482
Sse9I	AATT	4 cut(s)	460, 473, 623, 681
SsiI	CCGC	2 cut(s)	573, 737
SspMI	CTAG	3 cut(s)	51, 221, 230
SstI	GAGCTC	2 cut(s)	58, 622
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	283, 362, 542
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	3 cut(s)	18, 521, 763
TasI	AATT	4 cut(s)	460, 473, 623, 681
TfiI	GAWTC	3 cut(s)	164, 273, 654
Tru1I	TTAA	3 cut(s)	234, 357, 537
Tru9I	TTAA	3 cut(s)	234, 357, 537
TscAI	CASTG	5 cut(s)	198, 367, 547, 585, 746
TseFI	GTSAC	2 cut(s)	157, 322
TseI	GCWGC	2 cut(s)	343, 720
Tsp45I	GTSAC	2 cut(s)	157, 322
TspDTI	ATGAA	2 cut(s)	21, 261
TspRI	CASTG	5 cut(s)	198, 367, 547, 585, 746
Van91I	CCANNNNNTGG	2 cut(s)	134, 431
VpaK11BI	GGWCC	2 cut(s)	575, 686
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	1 cut(s)	482
XmaJI	CCTAGG	1 cut(s)	220
XspI	CTAG	3 cut(s)	51, 221, 230
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.