Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016368

Physical Location & Seq

Genomic Coordinates Forward (+)

28713745 .. 28714922

Gene Structure 1178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG287800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCACAAATTCCGGGAAGAGGAGGCAATGTACTTCTTCAGCCCAAGGGATCGGAAGTATCCGAACGGTAAGCTTCCGAGCCGCATAACTGGTGAAGGTGATGGATTATGGAAGGCAACTGGTAAAGACTTGGAAATTGTCAGTCAAAGGTGGAAGGTAATTGGAGCCAGGAAGACCCTGGTCTTTTATGATCTGAAATCAAAACATGGAGCAAAAAAGACCAATTGGATTATGCATGAATACACAATCGAGGAAAACATCTCACCATCCACAAGCACCACTAGAGCTCCTGGGGACAACAGGTTGGATGATTGGGTTTTGTGCAAGGTGTATCTAAGTAAGATGTCTAAACCTAAACCAAATACTGGGGATGGAGGGAAAACAGAGATGACAGATTCAGAGCCGTTAGAGCAGGATCTTCCAGTGCTCGAAAGCTCTGCGACTCCAAACCTAGGTGAACAAGTTAACGTGAGCAATGAAAGTGTGCAAGCATTATACAATGGAATCATGACAGTACCATATGGCTCTACTACTGGTTATGTGTCTCAAGAGGTGACAAATTTAGGTGCAAGGTCGCTTGCTCATCATCAACAAAACCTGTCATTGCTTCCAAGCTTTTCTCAGCTTCCAGTTATTAACAATGTTAGCTCTGCTATTTCCAGCCTTGCTGGAGGAGACAACAACAATGGAACGATCACTACACCAAATGATGGTTCAAATGGATCTGAAAAGGTGATAAATTTGCATAAAAACTTGCATGCAGATCATCAGCAAGACCTTCCATCACTTCAAAACTCTTCGAAGCCCTCTGTTATTAACAGCGTTGGGTCTGCTATTGCCAGTCTTGCCGGCAGTCCAGTGTTTCCTGATTTCCAACAGGTTCCTCGTGGTTTTGGAGCTCAATTTGGGACAAATATAGCTCCCATAACTGGAATCCAATCACATCAGTCCCCTCATGGAATTGGACCTCATCAATCTCGGCCAAGTTTGGACAATGGCTGCCTCCCTCCATTACCGCAGTGTTATTACTATTATGATGATCGAGGATATAGTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

353

Amino Acids

38.54

Weight (kDa)

6.41

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	5 - 82	1.2e-19	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24230
rosa_chinensis	RchiOBHm_Chr3g0482951
rosa_laevigata	RLG00000023315
rosa_multiflora	Rmu_sc0003351.1_g000008 Rmu_ssc0000175.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243400 Rroxscaffold_3G00243480 Rroxscaffold_6G00398810
rosa_rugosa	Rorug03G0202500 Rorug03G0202600
rosa_samantha	Rh3AG251400 Rh3BG287800 Rh3CG285200 Rh3DG280800
rosa_wichuraiana	Rw3G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	365, 710
AciI	CCGC	2 cut(s)	82, 1016
AclWI	GGATC	3 cut(s)	57, 423, 730
AcoI	YGGCCR	1 cut(s)	980
AcsI	RAATTY	3 cut(s)	8, 559, 739
AcuI	CTGAAG	1 cut(s)	22
AfaI	GTAC	2 cut(s)	32, 516
AfiI	CCNNNNNNNGG	5 cut(s)	19, 365, 452, 710, 929
AgsI	TTSAA	2 cut(s)	717, 791
AjnI	CCWGG	3 cut(s)	167, 177, 289
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
AluBI	AGCT	8 cut(s)	73, 287, 435, 615, 625, 648, 899, 920
AluI	AGCT	8 cut(s)	73, 287, 435, 615, 625, 648, 899, 920
Alw21I	GWGCWC	3 cut(s)	289, 429, 901
Alw26I	GTCTC	2 cut(s)	549, 669
AlwI	GGATC	3 cut(s)	57, 423, 730
AoxI	GGCC	1 cut(s)	980
ApeKI	GCWGC	1 cut(s)	999
ApoI	RAATTY	3 cut(s)	8, 559, 739
AspA2I	CCTAGG	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	965
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	6 cut(s)	104, 110, 255, 467, 565, 745
AsuII	TTCGAA	1 cut(s)	800
AvaII	GGWCC	1 cut(s)	965
AvrII	CCTAGG	1 cut(s)	451
BanII	GRGCYC	2 cut(s)	289, 901
BauI	CACGAG	1 cut(s)	885
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	3 cut(s)	289, 429, 901
BbvI	GCAGC	1 cut(s)	986
BccI	CCATC	5 cut(s)	95, 274, 365, 704, 790
BceAI	ACGGC	1 cut(s)	388
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	3 cut(s)	169, 179, 291
BciVI	GTATCC	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	549, 669
BfaI	CTAG	2 cut(s)	282, 452
BfuI	GTATCC	1 cut(s)	69
BisI	GCNGC	2 cut(s)	82, 1000
BlnI	CCTAGG	1 cut(s)	451
BlsI	GCNGC	2 cut(s)	83, 1001
Bme1390I	CCNGG	4 cut(s)	14, 169, 179, 291
Bme18I	GGWCC	1 cut(s)	965
BmgT120I	GGNCC	1 cut(s)	965
BmiI	GGNNCC	2 cut(s)	166, 882
BmrFI	CCNGG	4 cut(s)	14, 169, 179, 291
BmrI	ACTGGG	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	375
BoxI	GACNNNNGTC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	690
Bpu14I	TTCGAA	1 cut(s)	800
BpuEI	CTTGAG	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	14
BsaJI	CCNNGG	4 cut(s)	44, 177, 290, 451
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 271, 301
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 365, 452, 710, 929
Bse118I	RCCGGY	1 cut(s)	848
Bse1I	ACTGG	9 cut(s)	94, 124, 370, 422, 538, 629, 840, 857, 934
Bse3DI	GCAATG	3 cut(s)	33, 481, 602
BseBI	CCWGG	3 cut(s)	169, 179, 291
BseDI	CCNNGG	4 cut(s)	44, 177, 290, 451
BseGI	GGATG	3 cut(s)	266, 313, 376
BseLI	CCNNNNNNNGG	5 cut(s)	19, 365, 452, 710, 929
BseMI	GCAATG	3 cut(s)	33, 481, 602
BseMII	CTCAG	1 cut(s)	635
BseNI	ACTGG	9 cut(s)	94, 124, 370, 422, 538, 629, 840, 857, 934
BseRI	GAGGAG	2 cut(s)	35, 687
BseXI	GCAGC	1 cut(s)	986
BshFI	GGCC	1 cut(s)	982
BsiHKAI	GWGCWC	3 cut(s)	289, 429, 901
BsiSI	CCGG	2 cut(s)	13, 849
BslFI	GGGAC	3 cut(s)	308, 922, 934
BslI	CCNNNNNNNGG	5 cut(s)	19, 365, 452, 710, 929
BsmAI	GTCTC	2 cut(s)	549, 669
BsmFI	GGGAC	3 cut(s)	308, 922, 934
BsnI	GGCC	1 cut(s)	982
Bsp119I	TTCGAA	1 cut(s)	800
Bsp1286I	GDGCHC	3 cut(s)	289, 429, 901
Bsp143I	GATC	7 cut(s)	49, 190, 415, 693, 722, 763, 1039
BspACI	CCGC	2 cut(s)	82, 1016
BspANI	GGCC	1 cut(s)	982
BspCNI	CTCAG	1 cut(s)	634
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	166, 882
BspPI	GGATC	3 cut(s)	57, 423, 730
BspT104I	TTCGAA	1 cut(s)	800
BsrDI	GCAATG	3 cut(s)	33, 481, 602
BsrFI	RCCGGY	1 cut(s)	848
BsrI	ACTGG	9 cut(s)	94, 124, 370, 422, 538, 629, 840, 857, 934
BssAI	RCCGGY	1 cut(s)	848
BssECI	CCNNGG	4 cut(s)	44, 177, 290, 451
BssMI	GATC	7 cut(s)	49, 190, 415, 693, 722, 763, 1039
BssSI	CACGAG	1 cut(s)	885
BssT1I	CCWWGG	2 cut(s)	44, 451
Bst2BI	CACGAG	1 cut(s)	885
Bst2UI	CCWGG	3 cut(s)	169, 179, 291
Bst4CI	ACNGT	2 cut(s)	68, 514
Bst6I	CTCTTC	2 cut(s)	12, 802
BstBI	TTCGAA	1 cut(s)	800
BstC8I	GCNNGC	4 cut(s)	489, 579, 759, 850
BstDEI	CTNAG	2 cut(s)	335, 621
BstF5I	GGATG	3 cut(s)	266, 313, 376
BstKTI	GATC	7 cut(s)	52, 193, 418, 696, 725, 766, 1042
BstMAI	GTCTC	2 cut(s)	549, 669
BstMBI	GATC	7 cut(s)	49, 190, 415, 693, 722, 763, 1039
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 845
BstNI	CCWGG	3 cut(s)	169, 179, 291
BstNSI	RCATGY	1 cut(s)	761
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	12, 167, 177, 289
BstV1I	GCAGC	1 cut(s)	986
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	2 cut(s)	415, 722
BstYI	RGATCY	2 cut(s)	415, 722
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	982
BtsCI	GGATG	3 cut(s)	266, 313, 376
BtsI	GCAGTG	1 cut(s)	1025
BtsIMutI	CAGTG	3 cut(s)	429, 864, 1025
Cac8I	GCNNGC	4 cut(s)	489, 579, 759, 850
CciI	TCATGA	1 cut(s)	507
Cfr10I	RCCGGY	1 cut(s)	848
Cfr13I	GGNCC	1 cut(s)	965
Csp6I	GTAC	2 cut(s)	31, 515
CviAII	CATG	5 cut(s)	206, 236, 508, 758, 956
CviQI	GTAC	2 cut(s)	31, 515
DdeI	CTNAG	2 cut(s)	335, 621
DpnI	GATC	7 cut(s)	51, 192, 417, 695, 724, 765, 1041
DpnII	GATC	7 cut(s)	49, 190, 415, 693, 722, 763, 1039
EaeI	YGGCCR	1 cut(s)	980
Eam1104I	CTCTTC	2 cut(s)	12, 802
EarI	CTCTTC	2 cut(s)	12, 802
Ecl136II	GAGCTC	2 cut(s)	287, 899
Eco130I	CCWWGG	2 cut(s)	44, 451
Eco24I	GRGCYC	2 cut(s)	289, 901
Eco47I	GGWCC	1 cut(s)	965
Eco53kI	GAGCTC	2 cut(s)	287, 899
Eco57I	CTGAAG	1 cut(s)	22
EcoICRI	GAGCTC	2 cut(s)	287, 899
EcoRII	CCWGG	3 cut(s)	167, 177, 289
EcoT14I	CCWWGG	2 cut(s)	44, 451
EcoT22I	ATGCAT	1 cut(s)	237
EcoT38I	GRGCYC	2 cut(s)	289, 901
ErhI	CCWWGG	2 cut(s)	44, 451
FaeI	CATG	5 cut(s)	209, 239, 511, 761, 959
FaqI	GGGAC	3 cut(s)	308, 922, 934
FatI	CATG	5 cut(s)	205, 235, 507, 757, 955
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	82, 1000
FokI	GGATG	3 cut(s)	253, 320, 383
FriOI	GRGCYC	2 cut(s)	289, 901
Fsp4HI	GCNGC	2 cut(s)	82, 1000
FspBI	CTAG	2 cut(s)	282, 452
GluI	GCNGC	2 cut(s)	82, 1000
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	1 cut(s)	982
HapII	CCGG	2 cut(s)	13, 849
Hin1II	CATG	5 cut(s)	209, 239, 511, 761, 959
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HindIII	AAGCTT	2 cut(s)	71, 613
HinfI	GANTC	4 cut(s)	395, 442, 504, 933
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	13, 849
HphI	GGTGA	6 cut(s)	104, 110, 255, 467, 565, 745
Hpy166II	GTNNAC	2 cut(s)	458, 466
Hpy188I	TCNGA	6 cut(s)	54, 63, 78, 195, 400, 727
Hpy188III	TCNNGA	3 cut(s)	508, 548, 866
Hpy8I	GTNNAC	2 cut(s)	458, 466
HpyAV	CCTTC	4 cut(s)	89, 106, 148, 788
HpyCH4III	ACNGT	2 cut(s)	68, 514
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	8 cut(s)	4, 235, 324, 487, 569, 745, 757, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 845
HpyF3I	CTNAG	2 cut(s)	335, 621
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	5 cut(s)	209, 239, 511, 761, 959
KroI	GCCGGC	1 cut(s)	848
KroNI	GCCGGC	1 cut(s)	850
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	7 cut(s)	49, 190, 415, 693, 722, 763, 1039
LmnI	GCTCC	5 cut(s)	164, 209, 292, 896, 925
Lsp1109I	GCAGC	1 cut(s)	986
MaeI	CTAG	2 cut(s)	282, 452
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	7 cut(s)	51, 192, 417, 695, 724, 765, 1041
MboI	GATC	7 cut(s)	49, 190, 415, 693, 722, 763, 1039
MboII	GAAGA	5 cut(s)	28, 29, 184, 410, 789
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	2 cut(s)	415, 722
MhlI	GDGCHC	3 cut(s)	289, 429, 901
MluCI	AATT	8 cut(s)	8, 135, 159, 223, 559, 739, 902, 960
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	2 cut(s)	285, 898
Mph1103I	ATGCAT	1 cut(s)	237
MroNI	GCCGGC	1 cut(s)	848
MseI	TTAA	3 cut(s)	465, 636, 816
MspI	CCGG	2 cut(s)	13, 849
MspR9I	CCNGG	4 cut(s)	14, 169, 179, 291
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	3 cut(s)	169, 179, 291
MwoI	GCNNNNNNNGC	2 cut(s)	409, 845
NaeI	GCCGGC	1 cut(s)	850
NciI	CCSGG	1 cut(s)	14
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	7 cut(s)	49, 190, 415, 693, 722, 763, 1039
NgoMIV	GCCGGC	1 cut(s)	848
NlaIII	CATG	5 cut(s)	209, 239, 511, 761, 959
NlaIV	GGNNCC	2 cut(s)	166, 882
NmeAIII	GCCGAG	1 cut(s)	958
NmuCI	GTSAC	1 cut(s)	553
NsiI	ATGCAT	1 cut(s)	237
NspI	RCATGY	1 cut(s)	761
NspV	TTCGAA	1 cut(s)	800
PaeI	GCATGC	1 cut(s)	761
PagI	TCATGA	1 cut(s)	507
PdiI	GCCGGC	1 cut(s)	850
PfeI	GAWTC	3 cut(s)	395, 504, 933
PflMI	CCANNNNNTGG	2 cut(s)	365, 710
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	83, 1001
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PshAI	GACNNNNGTC	1 cut(s)	179
Psp124BI	GAGCTC	2 cut(s)	289, 901
Psp6I	CCWGG	3 cut(s)	167, 177, 289
PspGI	CCWGG	3 cut(s)	167, 177, 289
PspN4I	GGNNCC	2 cut(s)	166, 882
PspPI	GGNCC	1 cut(s)	965
PsrI	GAACNNNNNNTAC	2 cut(s)	682, 714
PsuI	RGATCY	2 cut(s)	415, 722
RsaI	GTAC	2 cut(s)	32, 516
RsaNI	GTAC	2 cut(s)	31, 515
SacI	GAGCTC	2 cut(s)	289, 901
SaqAI	TTAA	3 cut(s)	465, 636, 816
SatI	GCNGC	2 cut(s)	82, 1000
Sau3AI	GATC	7 cut(s)	49, 190, 415, 693, 722, 763, 1039
Sau96I	GGNCC	1 cut(s)	965
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	4 cut(s)	14, 169, 179, 291
SduI	GDGCHC	3 cut(s)	289, 429, 901
SfuI	TTCGAA	1 cut(s)	800
SinI	GGWCC	1 cut(s)	965
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
SphI	GCATGC	1 cut(s)	761
Sse9I	AATT	8 cut(s)	8, 135, 159, 223, 559, 739, 902, 960
SsiI	CCGC	2 cut(s)	82, 1016
SspMI	CTAG	2 cut(s)	282, 452
SstI	GAGCTC	2 cut(s)	289, 901
StyD4I	CCNGG	4 cut(s)	12, 167, 177, 289
StyI	CCWWGG	2 cut(s)	44, 451
TaaI	ACNGT	2 cut(s)	68, 514
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	4 cut(s)	249, 429, 800, 1042
TasI	AATT	8 cut(s)	8, 135, 159, 223, 559, 739, 902, 960
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	3 cut(s)	395, 504, 933
Tru1I	TTAA	3 cut(s)	465, 636, 816
Tru9I	TTAA	3 cut(s)	465, 636, 816
TscAI	CASTG	3 cut(s)	429, 864, 1025
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	1 cut(s)	999
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	2 cut(s)	252, 492
TspRI	CASTG	3 cut(s)	429, 864, 1025
Van91I	CCANNNNNTGG	2 cut(s)	365, 710
VpaK11BI	GGWCC	1 cut(s)	965
XapI	RAATTY	3 cut(s)	8, 559, 739
XceI	RCATGY	1 cut(s)	761
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmaJI	CCTAGG	1 cut(s)	451
XspI	CTAG	2 cut(s)	282, 452
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.