Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016368

Physical Location & Seq

Genomic Coordinates Forward (+)

28520780 .. 28522046

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG280800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCACAAATTCCGGGAAGAGGAGGCAATGTACTTCTTCAGCCCAAGGGATCGGAAGTATCCGAACGGCAAGCTTCCGAGCCGCATAACTGGTGAAGGTGATGGATTATGGAAGGCAACTGGTAAAGACTTGGAAATTTTCAGTCAAAGGTGGAAGGTAATTGGAGCCAGGAAGACCCTGGTCTTTTATGATCTGAAATCAAAACATGGAGCAAAAAAGACCAATTGGATAATGCATGAATACACAATCGAGGAAAACATCTCACCATCCACAAGCACCACTAGAGCTCCTGGGGACAACAGGTTGGATGATTGGGTTTTGTGCAAGGTGTATCTAAGTAAGATGTCTAAACCTAAACCAAATACTGGGGATGGAGGGAAAACAGATATGACAGATTCAGAGCCATTAGAGCAGGATCTCCCAGTGCTCGAAAGCTGGTCTGCGACTCCAAACCTAGGTGAACAAGTTAACGTGAGCAATGAAAGTGCGCAAGCATTATACAATGGAATCATGACAGTACCATATGGCTCTACTACTGGTTATGTGTCTCAAGAGGTGACAAATTTAGGTGCAAGGTCGCTTGCTCATCATCAACAAAACCTGTCATTGCTTCCAAGCTTTTCGCAGCTTCCAGTTATTAACAGTGTTACCTCTGCTATTTCCAGCCTTGCTGGAGGAGACAACAACAATGGAACGATCACTACACCAAATGATGGTTCAAATGGATCTGACAAGGTGATAAATTTGCAAAAAAACTTGCATGCAGATCATCAGCAAGACCTTCCATCACTTCAAAACTCTTCGAAGCCCTCTGTTATTAACAGCGTTGGGTCTGCTATTGCCAGTCTTGCCGGCAGTCCAGTGTTTCCTGATTTCCAACAGGTTCCTCGTGGTTTTGGAGCTCAATATGGGACAAATATAGCTCCCATAAATGGAATCCAAGCACATCAGTCCCCTCATGGAATTGGACGTCATCAATCTCGGCCAAGTCTGAACAATGGCTGCCTCCCTCCATTACCGCAGTGTTATTACTATTATGATGATCGAGGATATAGTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

354

Amino Acids

38.76

Weight (kDa)

6.8

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	5 - 82	2e-19	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24230
rosa_chinensis	RchiOBHm_Chr3g0482951
rosa_laevigata	RLG00000023315
rosa_multiflora	Rmu_sc0003351.1_g000008 Rmu_ssc0000175.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243400 Rroxscaffold_3G00243480 Rroxscaffold_6G00398810
rosa_rugosa	Rorug03G0202500 Rorug03G0202600
rosa_samantha	Rh3AG251400 Rh3BG287800 Rh3CG285200 Rh3DG280800
rosa_wichuraiana	Rw3G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	973
Acc16I	TGCGCA	1 cut(s)	489
AccB7I	CCANNNNNTGG	2 cut(s)	365, 713
AciI	CCGC	2 cut(s)	82, 1019
AclWI	GGATC	3 cut(s)	57, 423, 733
AcoI	YGGCCR	1 cut(s)	983
AcsI	RAATTY	4 cut(s)	8, 135, 562, 742
AcuI	CTGAAG	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	970
AfaI	GTAC	2 cut(s)	32, 519
AfiI	CCNNNNNNNGG	5 cut(s)	19, 365, 455, 713, 932
AgsI	TTSAA	2 cut(s)	720, 794
AjnI	CCWGG	3 cut(s)	167, 177, 289
AjuI	GAANNNNNNNTTGG	2 cut(s)	700, 732
AluBI	AGCT	7 cut(s)	73, 287, 435, 618, 628, 902, 923
AluI	AGCT	7 cut(s)	73, 287, 435, 618, 628, 902, 923
Alw21I	GWGCWC	3 cut(s)	289, 429, 904
Alw26I	GTCTC	2 cut(s)	552, 672
AlwI	GGATC	3 cut(s)	57, 423, 733
AoxI	GGCC	1 cut(s)	983
ApeKI	GCWGC	2 cut(s)	625, 1002
ApoI	RAATTY	4 cut(s)	8, 135, 562, 742
AspA2I	CCTAGG	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	6 cut(s)	104, 110, 255, 470, 568, 748
AsuII	TTCGAA	1 cut(s)	803
AvrII	CCTAGG	1 cut(s)	454
BanII	GRGCYC	2 cut(s)	289, 904
BauI	CACGAG	1 cut(s)	888
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	3 cut(s)	289, 429, 904
BbvI	GCAGC	2 cut(s)	637, 989
BccI	CCATC	5 cut(s)	95, 274, 365, 707, 793
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	3 cut(s)	169, 179, 291
BciVI	GTATCC	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	552, 672
BfaI	CTAG	2 cut(s)	282, 455
BfuI	GTATCC	1 cut(s)	69
BisI	GCNGC	3 cut(s)	82, 626, 1003
BlnI	CCTAGG	1 cut(s)	454
BlsI	GCNGC	3 cut(s)	83, 627, 1004
Bme1390I	CCNGG	4 cut(s)	14, 169, 179, 291
BmiI	GGNNCC	2 cut(s)	166, 885
BmrFI	CCNGG	4 cut(s)	14, 169, 179, 291
BmrI	ACTGGG	2 cut(s)	375, 416
BmuI	ACTGGG	2 cut(s)	375, 416
BoxI	GACNNNNGTC	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	693
Bpu14I	TTCGAA	1 cut(s)	803
BpuEI	CTTGAG	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	970
BsaJI	CCNNGG	4 cut(s)	44, 177, 290, 454
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 271, 301
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 365, 455, 713, 932
Bse118I	RCCGGY	1 cut(s)	851
Bse1I	ACTGG	8 cut(s)	94, 124, 370, 422, 541, 632, 843, 860
Bse3DI	GCAATG	3 cut(s)	33, 484, 605
BseBI	CCWGG	3 cut(s)	169, 179, 291
BseDI	CCNNGG	4 cut(s)	44, 177, 290, 454
BseGI	GGATG	3 cut(s)	266, 313, 376
BseLI	CCNNNNNNNGG	5 cut(s)	19, 365, 455, 713, 932
BseMI	GCAATG	3 cut(s)	33, 484, 605
BseNI	ACTGG	8 cut(s)	94, 124, 370, 422, 541, 632, 843, 860
BseRI	GAGGAG	2 cut(s)	35, 690
BseXI	GCAGC	2 cut(s)	637, 989
BshFI	GGCC	1 cut(s)	985
BsiHKAI	GWGCWC	3 cut(s)	289, 429, 904
BsiSI	CCGG	2 cut(s)	13, 852
BslFI	GGGAC	3 cut(s)	308, 925, 937
BslI	CCNNNNNNNGG	5 cut(s)	19, 365, 455, 713, 932
BsmAI	GTCTC	2 cut(s)	552, 672
BsmFI	GGGAC	3 cut(s)	308, 925, 937
BsnI	GGCC	1 cut(s)	985
Bsp119I	TTCGAA	1 cut(s)	803
Bsp1286I	GDGCHC	3 cut(s)	289, 429, 904
Bsp143I	GATC	7 cut(s)	49, 190, 415, 696, 725, 766, 1042
BspACI	CCGC	2 cut(s)	82, 1019
BspANI	GGCC	1 cut(s)	985
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	166, 885
BspPI	GGATC	3 cut(s)	57, 423, 733
BspT104I	TTCGAA	1 cut(s)	803
BsrDI	GCAATG	3 cut(s)	33, 484, 605
BsrFI	RCCGGY	1 cut(s)	851
BsrI	ACTGG	8 cut(s)	94, 124, 370, 422, 541, 632, 843, 860
BssAI	RCCGGY	1 cut(s)	851
BssECI	CCNNGG	4 cut(s)	44, 177, 290, 454
BssMI	GATC	7 cut(s)	49, 190, 415, 696, 725, 766, 1042
BssNI	GRCGYC	1 cut(s)	970
BssSI	CACGAG	1 cut(s)	888
BssT1I	CCWWGG	2 cut(s)	44, 454
Bst2BI	CACGAG	1 cut(s)	888
Bst2UI	CCWGG	3 cut(s)	169, 179, 291
Bst4CI	ACNGT	2 cut(s)	517, 644
Bst6I	CTCTTC	2 cut(s)	12, 805
BstACI	GRCGYC	1 cut(s)	970
BstBI	TTCGAA	1 cut(s)	803
BstC8I	GCNNGC	5 cut(s)	71, 492, 582, 762, 853
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	266, 313, 376
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	7 cut(s)	52, 193, 418, 699, 728, 769, 1045
BstMAI	GTCTC	2 cut(s)	552, 672
BstMBI	GATC	7 cut(s)	49, 190, 415, 696, 725, 766, 1042
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 848
BstNI	CCWGG	3 cut(s)	169, 179, 291
BstNSI	RCATGY	1 cut(s)	764
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	12, 167, 177, 289
BstV1I	GCAGC	2 cut(s)	637, 989
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	2 cut(s)	415, 725
BstYI	RGATCY	2 cut(s)	415, 725
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	985
BtsCI	GGATG	3 cut(s)	266, 313, 376
BtsI	GCAGTG	1 cut(s)	1028
BtsIMutI	CAGTG	4 cut(s)	429, 649, 867, 1028
Cac8I	GCNNGC	5 cut(s)	71, 492, 582, 762, 853
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	851
Csp6I	GTAC	2 cut(s)	31, 518
CviAII	CATG	5 cut(s)	206, 236, 511, 761, 959
CviQI	GTAC	2 cut(s)	31, 518
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	7 cut(s)	51, 192, 417, 698, 727, 768, 1044
DpnII	GATC	7 cut(s)	49, 190, 415, 696, 725, 766, 1042
EaeI	YGGCCR	1 cut(s)	983
Eam1104I	CTCTTC	2 cut(s)	12, 805
EarI	CTCTTC	2 cut(s)	12, 805
Ecl136II	GAGCTC	2 cut(s)	287, 902
Eco130I	CCWWGG	2 cut(s)	44, 454
Eco24I	GRGCYC	2 cut(s)	289, 904
Eco53kI	GAGCTC	2 cut(s)	287, 902
Eco57I	CTGAAG	1 cut(s)	22
EcoICRI	GAGCTC	2 cut(s)	287, 902
EcoRII	CCWGG	3 cut(s)	167, 177, 289
EcoT14I	CCWWGG	2 cut(s)	44, 454
EcoT22I	ATGCAT	1 cut(s)	237
EcoT38I	GRGCYC	2 cut(s)	289, 904
ErhI	CCWWGG	2 cut(s)	44, 454
FaeI	CATG	5 cut(s)	209, 239, 514, 764, 962
FaqI	GGGAC	3 cut(s)	308, 925, 937
FatI	CATG	5 cut(s)	205, 235, 510, 760, 958
FauNDI	CATATG	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	82, 626, 1003
FokI	GGATG	3 cut(s)	253, 320, 383
FriOI	GRGCYC	2 cut(s)	289, 904
Fsp4HI	GCNGC	3 cut(s)	82, 626, 1003
FspBI	CTAG	2 cut(s)	282, 455
FspI	TGCGCA	1 cut(s)	489
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	82, 626, 1003
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	1 cut(s)	985
HapII	CCGG	2 cut(s)	13, 852
HhaI	GCGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	970
Hin1II	CATG	5 cut(s)	209, 239, 514, 764, 962
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HindIII	AAGCTT	2 cut(s)	71, 616
HinfI	GANTC	4 cut(s)	395, 445, 507, 936
HpaI	GTTAAC	1 cut(s)	469
HpaII	CCGG	2 cut(s)	13, 852
HphI	GGTGA	6 cut(s)	104, 110, 255, 470, 568, 748
Hpy166II	GTNNAC	2 cut(s)	461, 469
Hpy188I	TCNGA	7 cut(s)	54, 63, 78, 195, 400, 730, 993
Hpy188III	TCNNGA	3 cut(s)	511, 551, 869
Hpy8I	GTNNAC	2 cut(s)	461, 469
HpyAV	CCTTC	4 cut(s)	89, 106, 148, 791
HpyCH4III	ACNGT	2 cut(s)	517, 644
HpyCH4IV	ACGT	2 cut(s)	471, 970
HpyCH4V	TGCA	7 cut(s)	4, 235, 324, 572, 748, 760, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 848
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	2 cut(s)	471, 970
Hsp92I	GRCGYC	1 cut(s)	970
Hsp92II	CATG	5 cut(s)	209, 239, 514, 764, 962
HspAI	GCGC	1 cut(s)	488
KroI	GCCGGC	1 cut(s)	851
KroNI	GCCGGC	1 cut(s)	853
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	7 cut(s)	49, 190, 415, 696, 725, 766, 1042
LmnI	GCTCC	5 cut(s)	164, 209, 292, 899, 928
Lsp1109I	GCAGC	2 cut(s)	637, 989
MaeI	CTAG	2 cut(s)	282, 455
MaeII	ACGT	2 cut(s)	471, 970
MaeIII	GTNAC	2 cut(s)	556, 646
MalI	GATC	7 cut(s)	51, 192, 417, 698, 727, 768, 1044
MboI	GATC	7 cut(s)	49, 190, 415, 696, 725, 766, 1042
MboII	GAAGA	4 cut(s)	28, 29, 184, 792
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	2 cut(s)	415, 725
MhlI	GDGCHC	3 cut(s)	289, 429, 904
MluCI	AATT	7 cut(s)	8, 135, 159, 223, 562, 742, 963
MlyI	GAGTC	1 cut(s)	439
MmeI	TCCRAC	2 cut(s)	285, 901
Mph1103I	ATGCAT	1 cut(s)	237
MroNI	GCCGGC	1 cut(s)	851
MseI	TTAA	3 cut(s)	468, 639, 819
MspI	CCGG	2 cut(s)	13, 852
MspR9I	CCNGG	4 cut(s)	14, 169, 179, 291
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	3 cut(s)	169, 179, 291
MwoI	GCNNNNNNNGC	2 cut(s)	409, 848
NaeI	GCCGGC	1 cut(s)	853
NciI	CCSGG	1 cut(s)	14
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	7 cut(s)	49, 190, 415, 696, 725, 766, 1042
NgoMIV	GCCGGC	1 cut(s)	851
NlaIII	CATG	5 cut(s)	209, 239, 514, 764, 962
NlaIV	GGNNCC	2 cut(s)	166, 885
NmeAIII	GCCGAG	1 cut(s)	961
NmuCI	GTSAC	1 cut(s)	556
NsbI	TGCGCA	1 cut(s)	489
NsiI	ATGCAT	1 cut(s)	237
NspI	RCATGY	1 cut(s)	764
NspV	TTCGAA	1 cut(s)	803
PaeI	GCATGC	1 cut(s)	764
PagI	TCATGA	1 cut(s)	510
PdiI	GCCGGC	1 cut(s)	853
PfeI	GAWTC	3 cut(s)	395, 507, 936
PflMI	CCANNNNNTGG	2 cut(s)	365, 713
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	83, 627, 1004
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PshAI	GACNNNNGTC	1 cut(s)	179
Psp124BI	GAGCTC	2 cut(s)	289, 904
Psp6I	CCWGG	3 cut(s)	167, 177, 289
PspGI	CCWGG	3 cut(s)	167, 177, 289
PspN4I	GGNNCC	2 cut(s)	166, 885
PsrI	GAACNNNNNNTAC	2 cut(s)	685, 717
PsuI	RGATCY	2 cut(s)	415, 725
RsaI	GTAC	2 cut(s)	32, 519
RsaNI	GTAC	2 cut(s)	31, 518
SacI	GAGCTC	2 cut(s)	289, 904
SaqAI	TTAA	3 cut(s)	468, 639, 819
SatI	GCNGC	3 cut(s)	82, 626, 1003
Sau3AI	GATC	7 cut(s)	49, 190, 415, 696, 725, 766, 1042
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	4 cut(s)	14, 169, 179, 291
SduI	GDGCHC	3 cut(s)	289, 429, 904
SfuI	TTCGAA	1 cut(s)	803
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
SphI	GCATGC	1 cut(s)	764
Sse9I	AATT	7 cut(s)	8, 135, 159, 223, 562, 742, 963
SsiI	CCGC	2 cut(s)	82, 1019
SspMI	CTAG	2 cut(s)	282, 455
SstI	GAGCTC	2 cut(s)	289, 904
StyD4I	CCNGG	4 cut(s)	12, 167, 177, 289
StyI	CCWWGG	2 cut(s)	44, 454
TaaI	ACNGT	2 cut(s)	517, 644
TaiI	ACGT	2 cut(s)	474, 973
TaqI	TCGA	4 cut(s)	249, 429, 803, 1045
TasI	AATT	7 cut(s)	8, 135, 159, 223, 562, 742, 963
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	3 cut(s)	395, 507, 936
Tru1I	TTAA	3 cut(s)	468, 639, 819
Tru9I	TTAA	3 cut(s)	468, 639, 819
TscAI	CASTG	4 cut(s)	429, 649, 867, 1028
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	2 cut(s)	625, 1002
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	2 cut(s)	252, 495
TspRI	CASTG	4 cut(s)	429, 649, 867, 1028
Van91I	CCANNNNNTGG	2 cut(s)	365, 713
XapI	RAATTY	4 cut(s)	8, 135, 562, 742
XceI	RCATGY	1 cut(s)	764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmaJI	CCTAGG	1 cut(s)	454
XspI	CTAG	2 cut(s)	282, 455
ZraI	GACGTC	1 cut(s)	971
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.