Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016368

Physical Location & Seq

Genomic Coordinates Reverse (-)

35944283 .. 35944958

Gene Structure 676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGACAGATTCAGAGCCATTAGAGCAGGATCTTCCGGTGCTCGAAAGCCCTGCGACTCCAAACCTAGGTGAACAAGTTAACGTGAGCAATGAAAGTGTGCGAGCATCATACAATGGAATCATGACAGTACCATATGGCTGTGCTACTGGTTATGTGTCTCAAGAGGTGACAAATATAGCTGCAAGGTCTCTCGCTCATCATCAACAAAACCTGTCATTGCTTCCAAGCTTTTCGCAGCTTCCAGTTATTAACAGTGTTAGCTCTGCTATTTCCAGCCTTGCTGGAGGAGACAACAACAATGGAACGATCACTACACCAAATGATGGTCCAAATGGATCTGAAAAGATCATCAGCAAGACCTTCCATCACTTCAAAGCTCTTCGAAGCCCTCTGTTAACAGCGTTGGGTCTGCTATTGCCAGTCTTGCCGGCGGTCCAGTGTACGTTTCCTGATTTCCAACAGGTTCCTCGTGGTTTTGGAGCTCAATTTGGGACAAATATAGCTCCCATAAATGGAATCCAAGCACATCAGTCCCCTCATGGAATTGGACCTCATCAATCTCGGCTAAGTTTGGACAATGGCTGCCTCCCTCCATTACCGCAGTGTTATTACTATTATGATGATCGAGAATGTAGTTCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

22.84

Weight (kDa)

5.34

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24230
rosa_chinensis	RchiOBHm_Chr3g0482951
rosa_laevigata	RLG00000023315
rosa_multiflora	Rmu_sc0003351.1_g000008 Rmu_ssc0000175.1_g000004
rosa_roxburghii	Rroxscaffold_3G00243400 Rroxscaffold_3G00243480 Rroxscaffold_6G00398810
rosa_rugosa	Rorug03G0202500 Rorug03G0202600
rosa_samantha	Rh3AG251400 Rh3BG287800 Rh3CG285200 Rh3DG280800
rosa_wichuraiana	Rw3G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	323
AciI	CCGC	2 cut(s)	431, 599
AclWI	GGATC	2 cut(s)	36, 343
AfaI	GTAC	2 cut(s)	129, 442
AfiI	CCNNNNNNNGG	3 cut(s)	65, 323, 512
AgsI	TTSAA	1 cut(s)	373
AluBI	AGCT	7 cut(s)	179, 228, 238, 261, 377, 482, 503
AluI	AGCT	7 cut(s)	179, 228, 238, 261, 377, 482, 503
Alw21I	GWGCWC	2 cut(s)	42, 484
Alw26I	GTCTC	3 cut(s)	162, 192, 282
AlwI	GGATC	2 cut(s)	36, 343
ApeKI	GCWGC	3 cut(s)	179, 235, 582
AspA2I	CCTAGG	1 cut(s)	64
AspS9I	GGNCC	3 cut(s)	326, 433, 548
AsuHPI	GGTGA	2 cut(s)	80, 178
AsuII	TTCGAA	1 cut(s)	382
AvaII	GGWCC	3 cut(s)	326, 433, 548
AvrII	CCTAGG	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	484
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	2 cut(s)	42, 484
BbvI	GCAGC	3 cut(s)	166, 247, 569
BccI	CCATC	2 cut(s)	317, 372
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BcoDI	GTCTC	3 cut(s)	162, 192, 282
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	3 cut(s)	180, 236, 583
BlnI	CCTAGG	1 cut(s)	64
BlsI	GCNGC	3 cut(s)	181, 237, 584
Bme18I	GGWCC	3 cut(s)	326, 433, 548
BmgT120I	GGNCC	3 cut(s)	326, 433, 548
BmiI	GGNNCC	1 cut(s)	465
BmsI	GCATC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 323, 512
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	4 cut(s)	151, 242, 419, 436
Bse3DI	GCAATG	2 cut(s)	94, 215
BseDI	CCNNGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	3 cut(s)	65, 323, 512
BseMI	GCAATG	2 cut(s)	94, 215
BseNI	ACTGG	4 cut(s)	151, 242, 419, 436
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	166, 247, 569
BsiHKAI	GWGCWC	2 cut(s)	42, 484
BsiSI	CCGG	2 cut(s)	35, 428
BslFI	GGGAC	2 cut(s)	505, 517
BslI	CCNNNNNNNGG	3 cut(s)	65, 323, 512
BsmAI	GTCTC	3 cut(s)	162, 192, 282
BsmFI	GGGAC	2 cut(s)	505, 517
Bso31I	GGTCTC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	42, 484
Bsp143I	GATC	5 cut(s)	28, 306, 335, 345, 622
BspACI	CCGC	2 cut(s)	431, 599
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	2 cut(s)	36, 343
BspQI	GCTCTTC	1 cut(s)	384
BspT104I	TTCGAA	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	192
BsrDI	GCAATG	2 cut(s)	94, 215
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	4 cut(s)	151, 242, 419, 436
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	5 cut(s)	28, 306, 335, 345, 622
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	468
Bst4CI	ACNGT	2 cut(s)	127, 254
Bst6I	CTCTTC	1 cut(s)	384
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	102, 429
BstDEI	CTNAG	1 cut(s)	566
BstKTI	GATC	5 cut(s)	31, 309, 338, 348, 625
BstMAI	GTCTC	3 cut(s)	162, 192, 282
BstMBI	GATC	5 cut(s)	28, 306, 335, 345, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 424
BstV1I	GCAGC	3 cut(s)	166, 247, 569
BstX2I	RGATCY	2 cut(s)	28, 335
BstYI	RGATCY	2 cut(s)	28, 335
BtsI	GCAGTG	1 cut(s)	608
BtsIMutI	CAGTG	3 cut(s)	259, 443, 608
Cac8I	GCNNGC	2 cut(s)	102, 429
CciI	TCATGA	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	3 cut(s)	326, 433, 548
Csp6I	GTAC	2 cut(s)	128, 441
CviAII	CATG	2 cut(s)	121, 539
CviQI	GTAC	2 cut(s)	128, 441
DdeI	CTNAG	1 cut(s)	566
DpnI	GATC	5 cut(s)	30, 308, 337, 347, 624
DpnII	GATC	5 cut(s)	28, 306, 335, 345, 622
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Ecl136II	GAGCTC	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	192
Eco47I	GGWCC	3 cut(s)	326, 433, 548
Eco53kI	GAGCTC	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	2 cut(s)	124, 542
FaqI	GGGAC	2 cut(s)	505, 517
FatI	CATG	2 cut(s)	120, 538
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	180, 236, 583
FriOI	GRGCYC	1 cut(s)	484
Fsp4HI	GCNGC	3 cut(s)	180, 236, 583
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	3 cut(s)	180, 236, 583
GsuI	CTGGAG	1 cut(s)	303
HapII	CCGG	2 cut(s)	35, 428
Hin1II	CATG	2 cut(s)	124, 542
HincII	GTYRAC	2 cut(s)	79, 396
HindII	GTYRAC	2 cut(s)	79, 396
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	4 cut(s)	8, 55, 117, 516
HpaI	GTTAAC	2 cut(s)	79, 396
HpaII	CCGG	2 cut(s)	35, 428
HphI	GGTGA	2 cut(s)	80, 178
Hpy166II	GTNNAC	4 cut(s)	71, 79, 396, 441
Hpy188I	TCNGA	2 cut(s)	13, 340
Hpy188III	TCNNGA	5 cut(s)	121, 161, 449, 626, 642
Hpy8I	GTNNAC	4 cut(s)	71, 79, 396, 441
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	2 cut(s)	127, 254
HpyCH4IV	ACGT	2 cut(s)	81, 443
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 424
HpyF3I	CTNAG	1 cut(s)	566
HpySE526I	ACGT	2 cut(s)	81, 443
Hsp92II	CATG	2 cut(s)	124, 542
KroI	GCCGGC	1 cut(s)	427
KroNI	GCCGGC	1 cut(s)	429
KspAI	GTTAAC	2 cut(s)	79, 396
Kzo9I	GATC	5 cut(s)	28, 306, 335, 345, 622
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	2 cut(s)	479, 508
Lsp1109I	GCAGC	3 cut(s)	166, 247, 569
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	2 cut(s)	81, 443
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	5 cut(s)	30, 308, 337, 347, 624
MboI	GATC	5 cut(s)	28, 306, 335, 345, 622
MboII	GAAGA	2 cut(s)	23, 371
MflI	RGATCY	2 cut(s)	28, 335
MhlI	GDGCHC	2 cut(s)	42, 484
MluCI	AATT	2 cut(s)	485, 543
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	8 cut(s)	157, 278, 399, 477, 546, 561, 596, 600
MroNI	GCCGGC	1 cut(s)	427
MseI	TTAA	3 cut(s)	78, 249, 395
MspI	CCGG	2 cut(s)	35, 428
MwoI	GCNNNNNNNGC	2 cut(s)	22, 424
NaeI	GCCGGC	1 cut(s)	429
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	5 cut(s)	28, 306, 335, 345, 622
NgoMIV	GCCGGC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	124, 542
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	382
PagI	TCATGA	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	8, 117, 516
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	3 cut(s)	181, 237, 584
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	484
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	3 cut(s)	326, 433, 548
PsrI	GAACNNNNNNTAC	2 cut(s)	295, 327
PsuI	RGATCY	2 cut(s)	28, 335
RsaI	GTAC	2 cut(s)	129, 442
RsaNI	GTAC	2 cut(s)	128, 441
SacI	GAGCTC	1 cut(s)	484
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	78, 249, 395
SatI	GCNGC	3 cut(s)	180, 236, 583
Sau3AI	GATC	5 cut(s)	28, 306, 335, 345, 622
Sau96I	GGNCC	3 cut(s)	326, 433, 548
SchI	GAGTC	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	42, 484
SfaNI	GCATC	1 cut(s)	113
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	3 cut(s)	326, 433, 548
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	485, 543
SsiI	CCGC	2 cut(s)	431, 599
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	484
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	2 cut(s)	127, 254
TaiI	ACGT	2 cut(s)	84, 446
TaqI	TCGA	3 cut(s)	42, 382, 625
TasI	AATT	2 cut(s)	485, 543
TfiI	GAWTC	3 cut(s)	8, 117, 516
Tru1I	TTAA	3 cut(s)	78, 249, 395
Tru9I	TTAA	3 cut(s)	78, 249, 395
TscAI	CASTG	3 cut(s)	259, 443, 608
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	3 cut(s)	179, 235, 582
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	3 cut(s)	259, 443, 608
Van91I	CCANNNNNTGG	1 cut(s)	323
VpaK11BI	GGWCC	3 cut(s)	326, 433, 548
XmaJI	CCTAGG	1 cut(s)	64
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.