Rroxscaffold_3G00243400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016368
Physical Location & Seq
Reverse (-)
35905585 .. 35906067
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243400.1

Sequence Viewer

Length: 483 bp
ATGACAGATTCAGAGCCATTAGAGCAGGATCTTCCGGTGCTCGAAAGCCCTGCGACTCCAAACCTAGGTGAACAAGTTAACGTGAGCAATGAAAGTGTGCGAGCATCATACAATGGAATCATGACAGTACCATATGGCTGTGCTACTGGTTATGTGTCTCAAGAGGTGACAAATATAGCTGCAAGGTCTCTCGCTCATCATCAACAAAACCTGTCATTGCTTCCAAGCTTTTCGCAGCTTCCAGTTATTAACAGTGTTAGCTCTGCTATTTCCAGCCTTGCTGGAGGAGACAACAACAATGGAACGATCACTACACCAAATGATGGTCCAAATGGATCTGAAAAGGTGATAAATTTGCATAAAAACTTGCATGCAGATCATCAGCAAGACCTTCCATCACTTCAAAGCTCTTCGAAGCCCTCTGTTAACAGCGTTGGGTCTGCTATTGCCAGTCTTGCCGGCGGTCCAGTGTACGTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

16.59

Weight (kDa)

4.77

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 323
AciI CCGC 1 cut(s) 462
AclWI GGATC 2 cut(s) 36, 343
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 2 cut(s) 129, 473
AfiI CCNNNNNNNGG 2 cut(s) 65, 323
AgsI TTSAA 1 cut(s) 404
AluBI AGCT 5 cut(s) 179, 228, 238, 261, 408
AluI AGCT 5 cut(s) 179, 228, 238, 261, 408
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 162, 192, 282
AlwI GGATC 2 cut(s) 36, 343
ApeKI GCWGC 2 cut(s) 179, 235
ApoI RAATTY 1 cut(s) 352
AspA2I CCTAGG 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 326, 464
AsuHPI GGTGA 3 cut(s) 80, 178, 358
AsuII TTCGAA 1 cut(s) 413
AvaII GGWCC 2 cut(s) 326, 464
AvrII CCTAGG 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 166, 247
BccI CCATC 2 cut(s) 317, 403
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BcoDI GTCTC 3 cut(s) 162, 192, 282
BfaI CTAG 1 cut(s) 65
BisI GCNGC 2 cut(s) 180, 236
BlnI CCTAGG 1 cut(s) 64
BlsI GCNGC 2 cut(s) 181, 237
Bme18I GGWCC 2 cut(s) 326, 464
BmgT120I GGNCC 2 cut(s) 326, 464
BmsI GCATC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 303
Bpu14I TTCGAA 1 cut(s) 413
BpuEI CTTGAG 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 323
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 4 cut(s) 151, 242, 450, 467
Bse3DI GCAATG 2 cut(s) 94, 215
BseDI CCNNGG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 65, 323
BseMI GCAATG 2 cut(s) 94, 215
BseNI ACTGG 4 cut(s) 151, 242, 450, 467
BseRI GAGGAG 1 cut(s) 300
BseXI GCAGC 2 cut(s) 166, 247
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 2 cut(s) 35, 459
BslI CCNNNNNNNGG 2 cut(s) 65, 323
BsmAI GTCTC 3 cut(s) 162, 192, 282
Bso31I GGTCTC 1 cut(s) 192
Bsp119I TTCGAA 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 4 cut(s) 28, 306, 335, 376
BspACI CCGC 1 cut(s) 462
BspHI TCATGA 1 cut(s) 120
BspPI GGATC 2 cut(s) 36, 343
BspQI GCTCTTC 1 cut(s) 415
BspT104I TTCGAA 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 192
BsrDI GCAATG 2 cut(s) 94, 215
BsrFI RCCGGY 1 cut(s) 458
BsrI ACTGG 4 cut(s) 151, 242, 450, 467
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 4 cut(s) 28, 306, 335, 376
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 127, 254
Bst6I CTCTTC 1 cut(s) 415
BstBI TTCGAA 1 cut(s) 413
BstC8I GCNNGC 3 cut(s) 102, 372, 460
BstKTI GATC 4 cut(s) 31, 309, 338, 379
BstMAI GTCTC 3 cut(s) 162, 192, 282
BstMBI GATC 4 cut(s) 28, 306, 335, 376
BstMWI GCNNNNNNNGC 2 cut(s) 22, 455
BstNSI RCATGY 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 166, 247
BstX2I RGATCY 2 cut(s) 28, 335
BstYI RGATCY 2 cut(s) 28, 335
BtsIMutI CAGTG 2 cut(s) 259, 474
Cac8I GCNNGC 3 cut(s) 102, 372, 460
CciI TCATGA 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 2 cut(s) 326, 464
Csp6I GTAC 2 cut(s) 128, 472
CviAII CATG 2 cut(s) 121, 371
CviQI GTAC 2 cut(s) 128, 472
DpnI GATC 4 cut(s) 30, 308, 337, 378
DpnII GATC 4 cut(s) 28, 306, 335, 376
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 326, 464
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 2 cut(s) 124, 374
FaiI YATR 8 cut(s) 109, 122, 133, 135, 153, 176, 360, 372
FatI CATG 2 cut(s) 120, 370
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 180, 236
Fsp4HI GCNGC 2 cut(s) 180, 236
FspBI CTAG 1 cut(s) 65
GluI GCNGC 2 cut(s) 180, 236
GsuI CTGGAG 1 cut(s) 303
HapII CCGG 2 cut(s) 35, 459
Hin1II CATG 2 cut(s) 124, 374
HincII GTYRAC 2 cut(s) 79, 427
HindII GTYRAC 2 cut(s) 79, 427
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 3 cut(s) 8, 55, 117
HpaI GTTAAC 2 cut(s) 79, 427
HpaII CCGG 2 cut(s) 35, 459
HphI GGTGA 3 cut(s) 80, 178, 358
Hpy166II GTNNAC 4 cut(s) 71, 79, 427, 472
Hpy188I TCNGA 2 cut(s) 13, 340
Hpy188III TCNNGA 3 cut(s) 121, 161, 480
Hpy8I GTNNAC 4 cut(s) 71, 79, 427, 472
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 2 cut(s) 127, 254
HpyCH4IV ACGT 2 cut(s) 81, 474
HpyCH4V TGCA 4 cut(s) 182, 358, 370, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 455
HpySE526I ACGT 2 cut(s) 81, 474
Hsp92II CATG 2 cut(s) 124, 374
KroI GCCGGC 1 cut(s) 458
KroNI GCCGGC 1 cut(s) 460
KspAI GTTAAC 2 cut(s) 79, 427
Kzo9I GATC 4 cut(s) 28, 306, 335, 376
LguI GCTCTTC 1 cut(s) 415
Lsp1109I GCAGC 2 cut(s) 166, 247
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 65
MaeII ACGT 2 cut(s) 81, 474
MaeIII GTNAC 1 cut(s) 166
MalI GATC 4 cut(s) 30, 308, 337, 378
MboI GATC 4 cut(s) 28, 306, 335, 376
MboII GAAGA 2 cut(s) 23, 402
MflI RGATCY 2 cut(s) 28, 335
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 352
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 3 cut(s) 157, 278, 430
MroNI GCCGGC 1 cut(s) 458
MseI TTAA 3 cut(s) 78, 249, 426
MspI CCGG 2 cut(s) 35, 459
MwoI GCNNNNNNNGC 2 cut(s) 22, 455
NaeI GCCGGC 1 cut(s) 460
NdeI CATATG 1 cut(s) 133
NdeII GATC 4 cut(s) 28, 306, 335, 376
NgoMIV GCCGGC 1 cut(s) 458
NlaIII CATG 2 cut(s) 124, 374
NmuCI GTSAC 1 cut(s) 166
NspI RCATGY 1 cut(s) 374
NspV TTCGAA 1 cut(s) 413
PaeI GCATGC 1 cut(s) 374
PagI TCATGA 1 cut(s) 120
PciSI GCTCTTC 1 cut(s) 415
PdiI GCCGGC 1 cut(s) 460
PfeI GAWTC 2 cut(s) 8, 117
PflMI CCANNNNNTGG 1 cut(s) 323
PkrI GCNGC 2 cut(s) 181, 237
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 326, 464
PsrI GAACNNNNNNTAC 2 cut(s) 295, 327
PsuI RGATCY 2 cut(s) 28, 335
RsaI GTAC 2 cut(s) 129, 473
RsaNI GTAC 2 cut(s) 128, 472
SapI GCTCTTC 1 cut(s) 415
SaqAI TTAA 3 cut(s) 78, 249, 426
SatI GCNGC 2 cut(s) 180, 236
Sau3AI GATC 4 cut(s) 28, 306, 335, 376
Sau96I GGNCC 2 cut(s) 326, 464
SchI GAGTC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 1 cut(s) 113
SfuI TTCGAA 1 cut(s) 413
SinI GGWCC 2 cut(s) 326, 464
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
SphI GCATGC 1 cut(s) 374
Sse9I AATT 1 cut(s) 352
SsiI CCGC 1 cut(s) 462
SspMI CTAG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 127, 254
TaiI ACGT 2 cut(s) 84, 477
TaqI TCGA 2 cut(s) 42, 413
TasI AATT 1 cut(s) 352
TfiI GAWTC 2 cut(s) 8, 117
Tru1I TTAA 3 cut(s) 78, 249, 426
Tru9I TTAA 3 cut(s) 78, 249, 426
TscAI CASTG 2 cut(s) 259, 474
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 2 cut(s) 179, 235
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 2 cut(s) 259, 474
Van91I CCANNNNNTGG 1 cut(s) 323
VpaK11BI GGWCC 2 cut(s) 326, 464
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 374
XmaJI CCTAGG 1 cut(s) 64
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.