FvH4_6g24590

carbonic anhydrase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012107
Physical Location & Seq
Forward (+)
18662023 .. 18666584
4562 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24590.t1

Sequence Viewer

Length: 861 bp
ATGTGGTTCTTCAACCCCAAACCCAACTCTTCCTTCTTCTTCCTTCTCATTTTGGGTGCCCTCATCTTATCTTCCCATCCTTCCTTTTTCATCATTTGCAGAGCTGCACTTGATGACTCTGGCGAAGTTGGTGATGAACTTCCATTTGCTTATGTTGAAGGAACTGGTAAAGGACCAAAGAAATGGGGTGATATTGACCCGCATTGGAAAGCTTGTGATAATGGAAAAATGCAATCTCCTATTGATCTTCTTGACAGTAGGGTGCAGGTTTTTCCCAACTTGGGGAAATTGAAAAGGGACTACAAACCATCCCCTGCTACTGTCAGGAACAGAGGGCATGACATTACAGTGAGGTGGAAAAAAGATGCGGGGAAAATCAACATCAATAGTACAGATTATAACTTGGTACAATGTCATTGGCATTCACCTGCTGAACACACATTCAATGGATCAAGGTATGCTTTGGAGCTTCACATTATTCATACAAGCTCTATCGGAAAGATTGCTGTTATTGGAATTGTATACAAATATGGCCGACCTGATCCCTTCCTTTCAAAGCTGTTCCACCACATAAATTCAGTTGGGAAAGAAGAGGTTGATATTGGGGTTATTAATCCAGGAGACATTAAGTTTGGAAGCAGAAAGTATTACAGATATATCGGTTCTCTCACAGTTCCTCCCTGCACTGAGGGTGTAATTTGGACGATAGTAAAAAAGGTGAGGACAGTTTCAATGGAACAAGTGCGAGCAATAAGAGAGACTGTTCATGATGGATACGAGGCAAATGCAAGGCCAACTCAGCAATTCAATGGGAGACCAGTGTTGTTATACACTCCTGGGGAGAATGGAGGTTCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase LSM

Protein Analysis

287

Amino Acids

32.07

Weight (kDa)

9.13

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Carb_anhydrase PF00194 58 - 275 1.2e-40 Eukaryotic-type carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20990
fragaria_vesca FvH4_6g24590 FvH4_6g24590 FvH4_6g24590
malus_domestica MD12G1083000.v1.1 MD14G1078100.v1.1
prunus_persica Prupe.7G052800_v2.0.a1
pyrus_communis pycom12g06990 pycom14g06650
rosa_chinensis RchiOBHm_Chr3g0483901
rosa_laevigata RLG00000023253
rosa_multiflora Rmu_sc0002252.1_g000013
rosa_roxburghii Rroxscaffold_6G00398060
rosa_rugosa Rorug03G0208600
rosa_samantha Rh3AG257300 Rh3BG293700 Rh3CG292000 Rh3DG287100
rosa_wichuraiana Rw3G023260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 399
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 2 cut(s) 256, 436
AccB1I GGYRCC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 522
AciI CCGC 2 cut(s) 200, 368
AclWI GGATC 2 cut(s) 457, 536
AcoI YGGCCR 1 cut(s) 532
AcsI RAATTY 1 cut(s) 574
AfaI GTAC 2 cut(s) 391, 408
AfiI CCNNNNNNNGG 2 cut(s) 281, 282
AgsI TTSAA 7 cut(s) 13, 158, 292, 445, 555, 732, 808
AjnI CCWGG 2 cut(s) 616, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 5 cut(s) 104, 212, 469, 489, 559
AluI AGCT 5 cut(s) 104, 212, 469, 489, 559
Alw26I GTCTC 3 cut(s) 615, 752, 808
AlwI GGATC 2 cut(s) 457, 536
AoxI GGCC 2 cut(s) 532, 791
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 574
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
AseI ATTAAT 1 cut(s) 612
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 4 cut(s) 143, 200, 417, 730
AvaII GGWCC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 61
BanI GGYRCC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 91
BccI CCATC 3 cut(s) 84, 316, 764
BcgI CGANNNNNNTGC 2 cut(s) 767, 801
BciT130I CCWGG 2 cut(s) 618, 837
BciVI GTATCC 1 cut(s) 767
BcoDI GTCTC 3 cut(s) 615, 752, 808
BfuAI ACCTGC 2 cut(s) 256, 436
BfuI GTATCC 1 cut(s) 767
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 618, 837
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 618, 837
BmsI GCATC 1 cut(s) 355
BsaI GGTCTC 1 cut(s) 808
BsaJI CCNNGG 1 cut(s) 836
BsaXI ACNNNNNCTCC 2 cut(s) 661, 691
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 282
Bse1I ACTGG 2 cut(s) 169, 818
BseBI CCWGG 2 cut(s) 618, 837
BseDI CCNNGG 1 cut(s) 836
BseGI GGATG 2 cut(s) 76, 308
BseLI CCNNNNNNNGG 2 cut(s) 281, 282
BseMII CTCAG 2 cut(s) 678, 812
BseNI ACTGG 2 cut(s) 169, 818
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 1 cut(s) 91
BsgI GTGCAG 3 cut(s) 90, 284, 667
BshFI GGCC 2 cut(s) 534, 793
BshNI GGYRCC 1 cut(s) 56
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 2 cut(s) 281, 282
BsmAI GTCTC 3 cut(s) 615, 752, 808
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 2 cut(s) 534, 793
Bso31I GGTCTC 1 cut(s) 808
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 3 cut(s) 244, 449, 541
BspACI CCGC 2 cut(s) 200, 368
BspANI GGCC 2 cut(s) 534, 793
BspCNI CTCAG 2 cut(s) 679, 811
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 1 cut(s) 58
BspMI ACCTGC 2 cut(s) 256, 436
BspPI GGATC 2 cut(s) 457, 536
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 808
BsrI ACTGG 2 cut(s) 169, 818
BssECI CCNNGG 1 cut(s) 836
BssMI GATC 3 cut(s) 244, 449, 541
BssNAI GTATAC 1 cut(s) 523
Bst1107I GTATAC 1 cut(s) 523
Bst2UI CCWGG 2 cut(s) 618, 837
Bst4CI ACNGT 6 cut(s) 257, 322, 349, 673, 727, 763
Bst6I CTCTTC 2 cut(s) 34, 585
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 2 cut(s) 687, 798
BstF5I GGATG 2 cut(s) 76, 308
BstKTI GATC 3 cut(s) 247, 452, 544
BstMAI GTCTC 3 cut(s) 615, 752, 808
BstMBI GATC 3 cut(s) 244, 449, 541
BstMWI GCNNNNNNNGC 1 cut(s) 799
BstNI CCWGG 2 cut(s) 618, 837
BstSCI CCNGG 2 cut(s) 616, 835
BstSLI GKGCMC 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 183
BstZ17I GTATAC 1 cut(s) 523
BsuI GTATCC 1 cut(s) 767
BsuRI GGCC 2 cut(s) 534, 793
BtsCI GGATG 2 cut(s) 76, 308
BtsIMutI CAGTG 3 cut(s) 354, 684, 825
BveI ACCTGC 2 cut(s) 256, 436
Cac8I GCNNGC 1 cut(s) 747
CciI TCATGA 1 cut(s) 766
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 390, 407
CviAII CATG 2 cut(s) 338, 767
CviJI RGCY 7 cut(s) 104, 212, 469, 489, 534, 559, 793
CviKI_1 RGCY 7 cut(s) 104, 212, 469, 489, 534, 559, 793
CviQI GTAC 2 cut(s) 390, 407
DdeI CTNAG 2 cut(s) 687, 798
DpnI GATC 3 cut(s) 246, 451, 543
DpnII GATC 3 cut(s) 244, 449, 541
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 2 cut(s) 34, 585
EarI CTCTTC 2 cut(s) 34, 585
Eco31I GGTCTC 1 cut(s) 808
Eco47I GGWCC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 616, 835
FaeI CATG 2 cut(s) 341, 770
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 1 cut(s) 311
FatI CATG 2 cut(s) 337, 766
FauI CCCGC 2 cut(s) 207, 361
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 2 cut(s) 63, 295
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 2 cut(s) 534, 793
Hin1II CATG 2 cut(s) 341, 770
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 1 cut(s) 116
HphI GGTGA 4 cut(s) 143, 200, 417, 730
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 1 cut(s) 497
Hpy188III TCNNGA 3 cut(s) 251, 325, 767
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 5 cut(s) 43, 53, 90, 152, 556
HpyCH4III ACNGT 6 cut(s) 257, 322, 349, 673, 727, 763
HpyCH4V TGCA 6 cut(s) 99, 107, 232, 265, 684, 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 799
HpyF3I CTNAG 2 cut(s) 687, 798
Hsp92II CATG 2 cut(s) 341, 770
Kzo9I GATC 3 cut(s) 244, 449, 541
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 355
MalI GATC 3 cut(s) 246, 451, 543
MboI GATC 3 cut(s) 244, 449, 541
MboII GAAGA 6 cut(s) 21, 28, 31, 63, 239, 602
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 5 cut(s) 287, 516, 574, 696, 803
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 9 cut(s) 71, 326, 345, 586, 682, 687, 714, 772, 842
MseI TTAA 2 cut(s) 612, 627
MslI CAYNNNNRTG 1 cut(s) 347
MspR9I CCNGG 2 cut(s) 618, 837
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 2 cut(s) 618, 837
MwoI GCNNNNNNNGC 1 cut(s) 799
NdeII GATC 3 cut(s) 244, 449, 541
NlaIII CATG 2 cut(s) 341, 770
NlaIV GGNNCC 1 cut(s) 58
PagI TCATGA 1 cut(s) 766
PaqCI CACCTGC 1 cut(s) 436
PctI GAATGC 1 cut(s) 421
PfoI TCCNGGA 1 cut(s) 616
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PshBI ATTAAT 1 cut(s) 612
PsiI TTATAA 1 cut(s) 399
Psp6I CCWGG 2 cut(s) 616, 835
PspGI CCWGG 2 cut(s) 616, 835
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 173
RsaI GTAC 2 cut(s) 391, 408
RsaNI GTAC 2 cut(s) 390, 407
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 2 cut(s) 612, 627
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 244, 449, 541
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 618, 837
SduI GDGCHC 1 cut(s) 61
SfaNI GCATC 1 cut(s) 355
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 5 cut(s) 287, 516, 574, 696, 803
SsiI CCGC 2 cut(s) 200, 368
StyD4I CCNGG 2 cut(s) 616, 835
TaaI ACNGT 6 cut(s) 257, 322, 349, 673, 727, 763
TasI AATT 5 cut(s) 287, 516, 574, 696, 803
TatI WGTACW 1 cut(s) 389
Tru1I TTAA 2 cut(s) 612, 627
Tru9I TTAA 2 cut(s) 612, 627
TscAI CASTG 3 cut(s) 354, 691, 825
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 4 cut(s) 79, 150, 470, 755
TspRI CASTG 3 cut(s) 354, 691, 825
VpaK11BI GGWCC 1 cut(s) 173
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.