Rh3BG293700

carbonic anhydrase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012107
Physical Location & Seq
Forward (+)
29467514 .. 29471867
4354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG293700.1

Sequence Viewer

Length: 816 bp
ATGCCATTTCCAATTTTGAAGCAACGAAGCATTATGTGGTTCTTCAACCCCAAACCCAACTTGTTCTTCTTCTTTCTCATTTTGGGTTCCCTCCTCCTCTTATCCCATCATTCCTTTTTCACCATCTGCAGAGCCGCACTTGATGACTCCGGGGAAGTTGGTGATGAACTTCCATTTACTTATGTTGAGGGAACTGGTAAAGGACCAAAGAAATGGGGTCAAATTGACCCAGATTGGAAAGTTTGTGATAATGGAGAAATGCAGTCTCCTATTGATCTTCTTGACGGCAGGGTGCAGGTTTTCCCTAACTTGGGGAAATTGAAAAGGGATTACAAACAAGCCCCTGCTACTATCAAGAACAGAGGGCATGACATTACGGTGAGGTGGAAAGAAGACGCAGGGAAAATCAATATTAATGGTACAGACTATAATCTGCTACAATGTCATTGGCATTCACCTTCTGAACACACATTCAATGGATCAAGGTATGCTTTGGAGCTTCACGTTATTCATACAAGCTCTACTGGAAAGATTGCTGTTATTGGAATTGTATACAAATATGGCCGACCTGATCCCTTCCTTTCAAAGCTGTTCCACCACATAAAATCAGTTGGGAAAGAAGAGGTTGATATTGGCATTATTAATCCAGGAGACATCAAGTTTGGAAGCAGAAAGTATTACAGATATATTGGTTCTCTCACTGTTCCTCCCTGCACTGAGGGTGTAATTTGGACAATAGTCAAAAAGGTGAGGACAGTTTCAAGGGAGCAAGTGAGAGCACTAAGGGAGATTGTTCATGATGTAAGTTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase LSM

Protein Analysis

271

Amino Acids

30.95

Weight (kDa)

9.13

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Carb_anhydrase PF00194 68 - 266 4.3e-38 Eukaryotic-type carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20990
fragaria_vesca FvH4_6g24590 FvH4_6g24590 FvH4_6g24590
malus_domestica MD12G1083000.v1.1 MD14G1078100.v1.1
prunus_persica Prupe.7G052800_v2.0.a1
pyrus_communis pycom12g06990 pycom14g06650
rosa_chinensis RchiOBHm_Chr3g0483901
rosa_laevigata RLG00000023253
rosa_multiflora Rmu_sc0002252.1_g000013
rosa_roxburghii Rroxscaffold_6G00398060
rosa_rugosa Rorug03G0208600
rosa_samantha Rh3AG257300 Rh3BG293700 Rh3CG292000 Rh3DG287100
rosa_wichuraiana Rw3G023260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 552
AciI CCGC 1 cut(s) 135
AclWI GGATC 2 cut(s) 487, 566
AcoI YGGCCR 1 cut(s) 562
AfaI GTAC 1 cut(s) 421
AfiI CCNNNNNNNGG 2 cut(s) 310, 311
AgsI TTSAA 6 cut(s) 19, 46, 322, 475, 585, 762
AjnI CCWGG 1 cut(s) 646
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 3 cut(s) 499, 519, 589
AluI AGCT 3 cut(s) 499, 519, 589
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 2 cut(s) 270, 645
AlwI GGATC 2 cut(s) 487, 566
AoxI GGCC 1 cut(s) 562
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
AseI ATTAAT 2 cut(s) 414, 642
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 5 cut(s) 112, 173, 391, 447, 760
AvaII GGWCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 781
BccI CCATC 2 cut(s) 114, 131
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 648
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 270, 645
BfmI CTRYAG 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 151, 648
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 151, 648
BoxI GACNNNNGTC 1 cut(s) 737
BpiI GAAGAC 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 691, 721
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 311
Bse1I ACTGG 2 cut(s) 199, 529
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 310, 311
BseMII CTCAG 1 cut(s) 708
BseNI ACTGG 2 cut(s) 199, 529
BseRI GAGGAG 2 cut(s) 83, 86
BsgI GTGCAG 2 cut(s) 314, 697
BshFI GGCC 1 cut(s) 564
BsiHKAI GWGCWC 1 cut(s) 781
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 310, 311
BsmAI GTCTC 2 cut(s) 270, 645
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 781
Bsp143I GATC 3 cut(s) 274, 479, 571
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 564
BspCNI CTCAG 1 cut(s) 709
BspHI TCATGA 1 cut(s) 796
BspLI GGNNCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 131
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 2 cut(s) 487, 566
BsrI ACTGG 2 cut(s) 199, 529
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 274, 479, 571
BssNAI GTATAC 1 cut(s) 553
Bst1107I GTATAC 1 cut(s) 553
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 3 cut(s) 379, 703, 757
Bst6I CTCTTC 1 cut(s) 615
BstDEI CTNAG 2 cut(s) 717, 782
BstKTI GATC 3 cut(s) 277, 482, 574
BstMAI GTCTC 2 cut(s) 270, 645
BstMBI GATC 3 cut(s) 274, 479, 571
BstNI CCWGG 1 cut(s) 648
BstPAI GACNNNNGTC 1 cut(s) 737
BstSCI CCNGG 2 cut(s) 149, 646
BstSFI CTRYAG 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 399
BstXI CCANNNNNNTGG 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 553
BsuRI GGCC 1 cut(s) 564
BtsIMutI CAGTG 2 cut(s) 699, 714
BveI ACCTGC 1 cut(s) 286
CciI TCATGA 1 cut(s) 796
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 420
CviAII CATG 2 cut(s) 368, 797
CviJI RGCY 6 cut(s) 134, 341, 499, 519, 564, 589
CviKI_1 RGCY 6 cut(s) 134, 341, 499, 519, 564, 589
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 2 cut(s) 717, 782
DpnI GATC 3 cut(s) 276, 481, 573
DpnII GATC 3 cut(s) 274, 479, 571
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco47I GGWCC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 646
FaeI CATG 2 cut(s) 371, 800
FalI AAGNNNNNCTT 2 cut(s) 475, 507
FatI CATG 2 cut(s) 367, 796
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 564
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 404
Hin1II CATG 2 cut(s) 371, 800
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 150
HphI GGTGA 5 cut(s) 112, 173, 391, 447, 760
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 1 cut(s) 463
Hpy188III TCNNGA 3 cut(s) 281, 355, 797
Hpy8I GTNNAC 1 cut(s) 553
HpyAV CCTTC 2 cut(s) 468, 586
HpyCH4III ACNGT 3 cut(s) 379, 703, 757
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 4 cut(s) 129, 262, 295, 714
HpyF3I CTNAG 2 cut(s) 717, 782
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 2 cut(s) 371, 800
Kzo9I GATC 3 cut(s) 274, 479, 571
LmnI GCTCC 2 cut(s) 496, 766
MaeII ACGT 1 cut(s) 504
MalI GATC 3 cut(s) 276, 481, 573
MboI GATC 3 cut(s) 274, 479, 571
MboII GAAGA 6 cut(s) 34, 58, 61, 269, 404, 632
MhlI GDGCHC 1 cut(s) 781
MluCI AATT 5 cut(s) 12, 222, 317, 546, 726
MlyI GAGTC 1 cut(s) 140
MseI TTAA 2 cut(s) 414, 642
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 151, 648
Mva1269I GAATGC 1 cut(s) 451
MvaI CCWGG 1 cut(s) 648
NciI CCSGG 1 cut(s) 151
NdeII GATC 3 cut(s) 274, 479, 571
NlaIII CATG 2 cut(s) 371, 800
NlaIV GGNNCC 1 cut(s) 88
PagI TCATGA 1 cut(s) 796
PctI GAATGC 1 cut(s) 451
PfoI TCCNGGA 1 cut(s) 646
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PshAI GACNNNNGTC 1 cut(s) 737
PshBI ATTAAT 2 cut(s) 414, 642
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 203
PstI CTGCAG 1 cut(s) 131
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 2 cut(s) 414, 642
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 3 cut(s) 274, 479, 571
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 151, 648
SduI GDGCHC 1 cut(s) 781
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 5 cut(s) 12, 222, 317, 546, 726
SsiI CCGC 1 cut(s) 135
SspI AATATT 1 cut(s) 412
StyD4I CCNGG 2 cut(s) 149, 646
TaaI ACNGT 3 cut(s) 379, 703, 757
TaiI ACGT 1 cut(s) 507
TasI AATT 5 cut(s) 12, 222, 317, 546, 726
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 414, 642
Tru9I TTAA 2 cut(s) 414, 642
TscAI CASTG 2 cut(s) 706, 721
TspDTI ATGAA 3 cut(s) 180, 500, 785
TspRI CASTG 2 cut(s) 706, 721
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 2 cut(s) 414, 642
XmiI GTMKAC 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.