Rmu_sc0002252.1_g000013

carbonic anhydrase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002252.1
OG0012107
Physical Location & Seq
Reverse (-)
64904 .. 69331
4428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002252.1_g000013.1.cds

Sequence Viewer

Length: 906 bp
atgccatttccaattttgaagcaacgaagcattatgtggttcttcaaccccaaccccaaccccaaccccaaacccaacttgttcttctttctcattttgggttccctcctcctcttatcccatcattcatttttcaccatttgcagagccgcacttgatgactccggggaagttggtgatgaacttccatttacttatgttgagggaactggtaaaggaccaaagaaatggggtcaaattgacccacattggaaagtttgtgataatggagaaatgcagtctcctattgatcttcttgacggcagggtgcaggttttccctaacttggggaaattgaaaagggattacaaacaagcccctgctactatcaagaacagagggcatgacattacggtgaggtggaaagaagacgcagggaaaatcaatattaatggtacagactataatctgctacaatgtcattggcattcaccttctgaacacacattcaatggatcaaggtatgctttggagctccatgttgttcatacaagctctactggaaagattgctgttattggaattgtatacaaatatggccgacctgatcccttcctttcaaagctgttccaccacataaaatcagttgggaaagaagaggttgatattggcattattaatccaggagacatcaagtttggaagcagaaagtattacagatatattggttctctcactgttcctccctgcactgagggtgtaatttggacaatagtcaaaaaggtgaggacagtttcaagggagcaagtgagagcactaagggagactgttcatgatggatatgaggaaaatgcaaggccaactcagcaattcaatgggagaccagtgttgttatacactccaggggagaatggaggttctggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase LSM

Protein Analysis

301

Amino Acids

34.03

Weight (kDa)

9.12

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20990
fragaria_vesca FvH4_6g24590 FvH4_6g24590 FvH4_6g24590
malus_domestica MD12G1083000.v1.1 MD14G1078100.v1.1
prunus_persica Prupe.7G052800_v2.0.a1
pyrus_communis pycom12g06990 pycom14g06650
rosa_chinensis RchiOBHm_Chr3g0483901
rosa_laevigata RLG00000023253
rosa_multiflora Rmu_sc0002252.1_g000013
rosa_roxburghii Rroxscaffold_6G00398060
rosa_rugosa Rorug03G0208600
rosa_samantha Rh3AG257300 Rh3BG293700 Rh3CG292000 Rh3DG287100
rosa_wichuraiana Rw3G023260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 567
AciI CCGC 1 cut(s) 150
AclWI GGATC 2 cut(s) 502, 581
AcoI YGGCCR 1 cut(s) 577
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 2 cut(s) 325, 326
AgsI TTSAA 7 cut(s) 19, 46, 337, 490, 600, 777, 853
AjnI CCWGG 2 cut(s) 661, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 3 cut(s) 514, 534, 604
AluI AGCT 3 cut(s) 514, 534, 604
Alw21I GWGCWC 2 cut(s) 516, 796
Alw26I GTCTC 4 cut(s) 285, 660, 797, 853
AlwI GGATC 2 cut(s) 502, 581
AoxI GGCC 2 cut(s) 577, 836
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
AseI ATTAAT 2 cut(s) 429, 657
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 5 cut(s) 127, 188, 406, 462, 775
AvaII GGWCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 2 cut(s) 516, 796
BccI CCATC 2 cut(s) 129, 809
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 2 cut(s) 663, 882
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 4 cut(s) 285, 660, 797, 853
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 3 cut(s) 166, 663, 882
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 3 cut(s) 166, 663, 882
BoxI GACNNNNGTC 1 cut(s) 752
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 864
BpuMI CCSGG 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 853
BsaJI CCNNGG 2 cut(s) 165, 881
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 326
Bse1I ACTGG 3 cut(s) 214, 544, 863
BseBI CCWGG 2 cut(s) 663, 882
BseDI CCNNGG 2 cut(s) 165, 881
BseLI CCNNNNNNNGG 2 cut(s) 325, 326
BseMII CTCAG 2 cut(s) 723, 857
BseNI ACTGG 3 cut(s) 214, 544, 863
BseRI GAGGAG 2 cut(s) 98, 101
BsgI GTGCAG 2 cut(s) 329, 712
BshFI GGCC 2 cut(s) 579, 838
BsiHKAI GWGCWC 2 cut(s) 516, 796
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 325, 326
BsmAI GTCTC 4 cut(s) 285, 660, 797, 853
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 2 cut(s) 579, 838
Bso31I GGTCTC 1 cut(s) 853
Bsp1286I GDGCHC 2 cut(s) 516, 796
Bsp143I GATC 3 cut(s) 289, 494, 586
BspACI CCGC 1 cut(s) 150
BspANI GGCC 2 cut(s) 579, 838
BspCNI CTCAG 2 cut(s) 724, 856
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 2 cut(s) 502, 581
BspTNI GGTCTC 1 cut(s) 853
BsrI ACTGG 3 cut(s) 214, 544, 863
BssECI CCNNGG 2 cut(s) 165, 881
BssMI GATC 3 cut(s) 289, 494, 586
BssNAI GTATAC 1 cut(s) 568
Bst1107I GTATAC 1 cut(s) 568
Bst2UI CCWGG 2 cut(s) 663, 882
Bst4CI ACNGT 4 cut(s) 394, 718, 772, 808
Bst6I CTCTTC 1 cut(s) 630
BstDEI CTNAG 3 cut(s) 732, 797, 843
BstKTI GATC 3 cut(s) 292, 497, 589
BstMAI GTCTC 4 cut(s) 285, 660, 797, 853
BstMBI GATC 3 cut(s) 289, 494, 586
BstMWI GCNNNNNNNGC 1 cut(s) 844
BstNI CCWGG 2 cut(s) 663, 882
BstPAI GACNNNNGTC 1 cut(s) 752
BstSCI CCNGG 3 cut(s) 164, 661, 880
BstV2I GAAGAC 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 228
BstZ17I GTATAC 1 cut(s) 568
BsuRI GGCC 2 cut(s) 579, 838
BtsIMutI CAGTG 3 cut(s) 714, 729, 870
BveI ACCTGC 1 cut(s) 301
CciI TCATGA 1 cut(s) 811
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 435
CviAII CATG 3 cut(s) 383, 518, 812
CviJI RGCY 7 cut(s) 149, 356, 514, 534, 579, 604, 838
CviKI_1 RGCY 7 cut(s) 149, 356, 514, 534, 579, 604, 838
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 3 cut(s) 732, 797, 843
DpnI GATC 3 cut(s) 291, 496, 588
DpnII GATC 3 cut(s) 289, 494, 586
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Ecl136II GAGCTC 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 516
Eco31I GGTCTC 1 cut(s) 853
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 514
EcoICRI GAGCTC 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 661, 880
EcoT38I GRGCYC 1 cut(s) 516
FaeI CATG 3 cut(s) 386, 521, 815
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FatI CATG 3 cut(s) 382, 517, 811
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 2 cut(s) 579, 838
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 419
Hin1II CATG 3 cut(s) 386, 521, 815
HinfI GANTC 1 cut(s) 161
HpaII CCGG 1 cut(s) 165
HphI GGTGA 5 cut(s) 127, 188, 406, 462, 775
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 3 cut(s) 296, 370, 812
Hpy8I GTNNAC 1 cut(s) 568
HpyAV CCTTC 2 cut(s) 483, 601
HpyCH4III ACNGT 4 cut(s) 394, 718, 772, 808
HpyCH4V TGCA 5 cut(s) 144, 277, 310, 729, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 844
HpyF3I CTNAG 3 cut(s) 732, 797, 843
Hsp92II CATG 3 cut(s) 386, 521, 815
Kzo9I GATC 3 cut(s) 289, 494, 586
LmnI GCTCC 3 cut(s) 511, 519, 781
MalI GATC 3 cut(s) 291, 496, 588
MboI GATC 3 cut(s) 289, 494, 586
MboII GAAGA 5 cut(s) 34, 76, 284, 419, 647
MhlI GDGCHC 2 cut(s) 516, 796
MluCI AATT 6 cut(s) 12, 237, 332, 561, 741, 848
MlyI GAGTC 1 cut(s) 155
MseI TTAA 2 cut(s) 429, 657
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 3 cut(s) 166, 663, 882
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 2 cut(s) 663, 882
MwoI GCNNNNNNNGC 1 cut(s) 844
NciI CCSGG 1 cut(s) 166
NdeII GATC 3 cut(s) 289, 494, 586
NlaIII CATG 3 cut(s) 386, 521, 815
NlaIV GGNNCC 1 cut(s) 103
PagI TCATGA 1 cut(s) 811
PctI GAATGC 1 cut(s) 466
PfoI TCCNGGA 1 cut(s) 661
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PshAI GACNNNNGTC 1 cut(s) 752
PshBI ATTAAT 2 cut(s) 429, 657
Psp124BI GAGCTC 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 661, 880
PspGI CCWGG 2 cut(s) 661, 880
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 218
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 1 cut(s) 392
SacI GAGCTC 1 cut(s) 516
SaqAI TTAA 2 cut(s) 429, 657
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 3 cut(s) 289, 494, 586
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 3 cut(s) 166, 663, 882
SduI GDGCHC 2 cut(s) 516, 796
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 392
Sse9I AATT 6 cut(s) 12, 237, 332, 561, 741, 848
SsiI CCGC 1 cut(s) 150
SspI AATATT 1 cut(s) 427
SstI GAGCTC 1 cut(s) 516
StyD4I CCNGG 3 cut(s) 164, 661, 880
TaaI ACNGT 4 cut(s) 394, 718, 772, 808
TasI AATT 6 cut(s) 12, 237, 332, 561, 741, 848
TauI GCSGC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 429, 657
Tru9I TTAA 2 cut(s) 429, 657
TscAI CASTG 3 cut(s) 721, 736, 870
TspDTI ATGAA 4 cut(s) 117, 195, 515, 800
TspRI CASTG 3 cut(s) 721, 736, 870
VpaK11BI GGWCC 1 cut(s) 218
VspI ATTAAT 2 cut(s) 429, 657
XmiI GTMKAC 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.