Prupe.7G052800_v2.0.a1

carbonic anhydrase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012107
Physical Location & Seq
Forward (+)
9106721 .. 9110580
3860 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G052800.1

Sequence Viewer

Length: 846 bp
ATGATGTGCTCCAACTTCTTCCTTCTCTTTTTAGCAGCTTCTCTCATTTTCTTGCCTCATCAGTCCTTCTTCACCATTTGCAGAGCAGTACTCGATCAGCCTGATGATGAAGTTGGTGATGAAATCAAATTTACTTATATTGAAGGAACTGGTAAAGGACCAAAGAAATGGGGCCAGATTGACCCACATTGGAAAGTCTGTGATAATGGAAAATTGCAGTCTCCAATTGATCTTCTTGACCAAAGGGTGCAGGTTTTCCCTAACTTGGGGAAATTGAAAAGGGACTACAAACCAGCTCCTGCTACTGTGAAGAACAGAGGACATGACGTTACGGTGAGGTGGAAGGGAGATGCAGGAAAAATTAACATAAATGGGACTGACTTTGGATTGCTACAATGTCATTGGCATTCACCCTCAGAACACACATTTAATGGATCAAGATATGCTTTGGAACTTCATGTCATTCATTTAAGCTCTACTCATAAGATTGCTGTTATTGGAATTGTGTACAAATATGGCCGGCCTGATCCCTTCCTTTCGAAGCTGCTCCACCACATAAAATCAGTTGGGACAAAAGAGGTTGACATAGGGATGATTAATTCTGGAGACATTAAGTTTGGAAGCAGAAAGTATTACAGATACATTGGTTCTCTTACAGTTCCTCCCTGCACTGAGGGTGTAATTTGGACAATAGTCAAAAAGGTGAGGACAGTCTCGAGGGAGCAAGTTCGAGCGCTAAGGGAGGCTGTTCACGATGGATTTGAGGCGAATGCTAGGCCAACTCAGCAATTGGATGGAAGACCAGTGTTGTTGTACACTCCAAGAGACAATGGAGGATCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase LSM

Protein Analysis

282

Amino Acids

31.62

Weight (kDa)

9.27

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20990
fragaria_vesca FvH4_6g24590 FvH4_6g24590 FvH4_6g24590
malus_domestica MD12G1083000.v1.1 MD14G1078100.v1.1
prunus_persica Prupe.7G052800_v2.0.a1
pyrus_communis pycom12g06990 pycom14g06650
rosa_chinensis RchiOBHm_Chr3g0483901
rosa_laevigata RLG00000023253
rosa_multiflora Rmu_sc0002252.1_g000013
rosa_roxburghii Rroxscaffold_6G00398060
rosa_rugosa Rorug03G0208600
rosa_samantha Rh3AG257300 Rh3BG293700 Rh3CG292000 Rh3DG287100
rosa_wichuraiana Rw3G023260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 241
AclWI GGATC 3 cut(s) 442, 521, 844
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 1 cut(s) 128
AfaI GTAC 3 cut(s) 90, 509, 815
AfeI AGCGCT 1 cut(s) 735
AfiI CCNNNNNNNGG 2 cut(s) 265, 266
AgsI TTSAA 2 cut(s) 143, 277
AluBI AGCT 5 cut(s) 38, 296, 474, 544, 842
AluI AGCT 5 cut(s) 38, 296, 474, 544, 842
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 4 cut(s) 225, 600, 718, 819
AlwI GGATC 3 cut(s) 442, 521, 844
AlwNI CAGNNNCTG 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 715
Aor51HI AGCGCT 1 cut(s) 735
AoxI GGCC 4 cut(s) 172, 517, 521, 776
ApeKI GCWGC 2 cut(s) 35, 544
ApoI RAATTY 1 cut(s) 128
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
AseI ATTAAT 1 cut(s) 597
AspLEI GCGC 1 cut(s) 736
AspS9I GGNCC 2 cut(s) 158, 172
AsuHPI GGTGA 5 cut(s) 64, 128, 346, 402, 715
AsuII TTCGAA 1 cut(s) 539
AvaI CYCGRG 1 cut(s) 715
AvaII GGWCC 1 cut(s) 158
BaeI ACNNNNGTAYC 2 cut(s) 631, 664
BbsI GAAGAC 1 cut(s) 805
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 47, 531
BccI CCATC 2 cut(s) 749, 788
BcoDI GTCTC 4 cut(s) 225, 600, 718, 819
BfaI CTAG 1 cut(s) 774
BfoI RGCGCY 1 cut(s) 737
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 2 cut(s) 36, 545
BlsI GCNGC 2 cut(s) 37, 546
BmcAI AGTACT 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 715
BmgT120I GGNCC 2 cut(s) 158, 172
BmiI GGNNCC 1 cut(s) 173
BmsI GCATC 1 cut(s) 340
BoxI GACNNNNGTC 1 cut(s) 692
BpiI GAAGAC 1 cut(s) 805
BplI GAGNNNNNCTC 2 cut(s) 75, 107
BpmI CTGGAG 1 cut(s) 624
Bpu10I CCTNAGC 1 cut(s) 737
Bpu14I TTCGAA 1 cut(s) 539
BsaXI ACNNNNNCTCC 2 cut(s) 646, 676
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 266
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 2 cut(s) 154, 803
BseGI GGATG 2 cut(s) 597, 799
BseLI CCNNNNNNNGG 2 cut(s) 265, 266
BseMII CTCAG 3 cut(s) 429, 663, 797
BseNI ACTGG 2 cut(s) 154, 803
BseXI GCAGC 2 cut(s) 47, 531
BsgI GTGCAG 2 cut(s) 269, 652
BshFI GGCC 4 cut(s) 174, 519, 523, 778
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 715
BsiSI CCGG 1 cut(s) 520
BslFI GGGAC 3 cut(s) 296, 388, 583
BslI CCNNNNNNNGG 2 cut(s) 265, 266
BsmAI GTCTC 4 cut(s) 225, 600, 718, 819
BsmFI GGGAC 3 cut(s) 296, 388, 583
BsmI GAATGC 2 cut(s) 406, 775
BsnI GGCC 4 cut(s) 174, 519, 523, 778
BsoBI CYCGRG 1 cut(s) 715
Bsp119I TTCGAA 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1407I TGTACA 2 cut(s) 507, 813
Bsp143I GATC 5 cut(s) 94, 229, 434, 526, 836
BspANI GGCC 4 cut(s) 174, 519, 523, 778
BspCNI CTCAG 3 cut(s) 428, 664, 796
BspLI GGNNCC 1 cut(s) 173
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 3 cut(s) 442, 521, 844
BspT104I TTCGAA 1 cut(s) 539
BsrFI RCCGGY 1 cut(s) 519
BsrGI TGTACA 2 cut(s) 507, 813
BsrI ACTGG 2 cut(s) 154, 803
BssAI RCCGGY 1 cut(s) 519
BssMI GATC 5 cut(s) 94, 229, 434, 526, 836
Bst4CI ACNGT 4 cut(s) 307, 334, 658, 712
BstAUI TGTACA 2 cut(s) 507, 813
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 5 cut(s) 415, 672, 737, 783, 843
BstF5I GGATG 2 cut(s) 597, 799
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 1 cut(s) 736
BstKTI GATC 5 cut(s) 97, 232, 437, 529, 839
BstMAI GTCTC 4 cut(s) 225, 600, 718, 819
BstMBI GATC 5 cut(s) 94, 229, 434, 526, 836
BstMWI GCNNNNNNNGC 1 cut(s) 784
BstPAI GACNNNNGTC 1 cut(s) 692
BstV1I GCAGC 2 cut(s) 47, 531
BstV2I GAAGAC 1 cut(s) 805
BstXI CCANNNNNNTGG 1 cut(s) 168
BsuRI GGCC 4 cut(s) 174, 519, 523, 778
BtsCI GGATG 2 cut(s) 597, 799
BtsIMutI CAGTG 2 cut(s) 669, 810
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 521
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 1 cut(s) 736
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 2 cut(s) 158, 172
Csp6I GTAC 3 cut(s) 89, 508, 814
CviAII CATG 2 cut(s) 323, 458
CviQI GTAC 3 cut(s) 89, 508, 814
DdeI CTNAG 5 cut(s) 415, 672, 737, 783, 843
DpnI GATC 5 cut(s) 96, 231, 436, 528, 838
DpnII GATC 5 cut(s) 94, 229, 434, 526, 836
EaeI YGGCCR 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 158
Eco47III AGCGCT 1 cut(s) 735
Eco88I CYCGRG 1 cut(s) 715
FaeI CATG 2 cut(s) 326, 461
FaiI YATR 9 cut(s) 138, 324, 368, 444, 459, 483, 516, 557, 587
FalI AAGNNNNNCTT 2 cut(s) 430, 462
FaqI GGGAC 3 cut(s) 296, 388, 583
FatI CATG 2 cut(s) 322, 457
Fnu4HI GCNGC 2 cut(s) 36, 545
FokI GGATG 2 cut(s) 604, 806
FseI GGCCGGCC 1 cut(s) 523
Fsp4HI GCNGC 2 cut(s) 36, 545
FspBI CTAG 1 cut(s) 774
GlaI GCGC 1 cut(s) 735
GluI GCNGC 2 cut(s) 36, 545
GsuI CTGGAG 1 cut(s) 624
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 4 cut(s) 174, 519, 523, 778
HapII CCGG 1 cut(s) 520
HhaI GCGC 1 cut(s) 736
Hin1II CATG 2 cut(s) 326, 461
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HpaII CCGG 1 cut(s) 520
HphI GGTGA 5 cut(s) 64, 128, 346, 402, 715
Hpy166II GTNNAC 4 cut(s) 508, 583, 751, 816
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 5 cut(s) 236, 438, 603, 715, 752
Hpy8I GTNNAC 4 cut(s) 508, 583, 751, 816
HpyAV CCTTC 5 cut(s) 32, 76, 137, 337, 541
HpyCH4III ACNGT 4 cut(s) 307, 334, 658, 712
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 5 cut(s) 81, 217, 250, 353, 669
HpyF10VI GCNNNNNNNGC 1 cut(s) 784
HpyF3I CTNAG 5 cut(s) 415, 672, 737, 783, 843
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 2 cut(s) 326, 461
HspAI GCGC 1 cut(s) 734
KroI GCCGGC 1 cut(s) 519
KroNI GCCGGC 1 cut(s) 521
Kzo9I GATC 5 cut(s) 94, 229, 434, 526, 836
LmnI GCTCC 4 cut(s) 14, 301, 552, 721
Lsp1109I GCAGC 2 cut(s) 47, 531
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 774
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 328
MalI GATC 5 cut(s) 96, 231, 436, 528, 838
MboI GATC 5 cut(s) 94, 229, 434, 526, 836
MboII GAAGA 5 cut(s) 10, 61, 224, 322, 810
MfeI CAATTG 2 cut(s) 225, 788
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 9 cut(s) 128, 212, 225, 272, 360, 501, 598, 681, 788
MmeI TCCRAC 1 cut(s) 36
MroNI GCCGGC 1 cut(s) 519
MseI TTAA 5 cut(s) 363, 429, 470, 597, 612
MslI CAYNNNNRTG 1 cut(s) 590
MspI CCGG 1 cut(s) 520
MunI CAATTG 2 cut(s) 225, 788
Mva1269I GAATGC 2 cut(s) 406, 775
MwoI GCNNNNNNNGC 1 cut(s) 784
NaeI GCCGGC 1 cut(s) 521
NdeII GATC 5 cut(s) 94, 229, 434, 526, 836
NgoMIV GCCGGC 1 cut(s) 519
NlaIII CATG 2 cut(s) 326, 461
NlaIV GGNNCC 1 cut(s) 173
NspV TTCGAA 1 cut(s) 539
PaeR7I CTCGAG 1 cut(s) 715
PctI GAATGC 2 cut(s) 406, 775
PdiI GCCGGC 1 cut(s) 521
PkrI GCNGC 2 cut(s) 37, 546
PshAI GACNNNNGTC 1 cut(s) 692
PshBI ATTAAT 1 cut(s) 597
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 2 cut(s) 158, 172
PstNI CAGNNNCTG 1 cut(s) 299
RigI GGCCGGCC 1 cut(s) 523
RsaI GTAC 3 cut(s) 90, 509, 815
RsaNI GTAC 3 cut(s) 89, 508, 814
RseI CAYNNNNRTG 1 cut(s) 590
SaqAI TTAA 5 cut(s) 363, 429, 470, 597, 612
SatI GCNGC 2 cut(s) 36, 545
Sau3AI GATC 5 cut(s) 94, 229, 434, 526, 836
Sau96I GGNCC 2 cut(s) 158, 172
ScaI AGTACT 1 cut(s) 90
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 1 cut(s) 340
Sfr274I CTCGAG 1 cut(s) 715
SfuI TTCGAA 1 cut(s) 539
SinI GGWCC 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 715
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 1 cut(s) 715
SmoI CTYRAG 1 cut(s) 715
Sse9I AATT 9 cut(s) 128, 212, 225, 272, 360, 501, 598, 681, 788
SspMI CTAG 1 cut(s) 774
TaaI ACNGT 4 cut(s) 307, 334, 658, 712
TaiI ACGT 1 cut(s) 330
TaqI TCGA 4 cut(s) 93, 539, 716, 730
TasI AATT 9 cut(s) 128, 212, 225, 272, 360, 501, 598, 681, 788
TatI WGTACW 3 cut(s) 88, 507, 813
Tru1I TTAA 5 cut(s) 363, 429, 470, 597, 612
Tru9I TTAA 5 cut(s) 363, 429, 470, 597, 612
TscAI CASTG 2 cut(s) 676, 810
TseI GCWGC 2 cut(s) 35, 544
TspDTI ATGAA 4 cut(s) 123, 135, 446, 455
TspRI CASTG 2 cut(s) 676, 810
VpaK11BI GGWCC 1 cut(s) 158
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 715
XspI CTAG 1 cut(s) 774
ZrmI AGTACT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.