Rh3DG287100

carbonic anhydrase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0012107
Physical Location & Seq
Forward (+)
29620605 .. 29626303
5699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG287100.1

Sequence Viewer

Length: 825 bp
ATGCCATTTCCAATTTTGAAGCAACGAAGCATTATGTGGTTCTTCAACCCCAACCCCAACCCCAAACCCAACTTGCTCTTCTTTCTCATTTTGGGTTCCCTCCTCCTCTTATCCCATCATTCATTTTTCACCATTTGCAGAGCCGCACTTGATGACTCCGGGGAAGTTGGTGATGAACTTCCATTTACTTATGTTGAGGGAACCGGTAAAGGACCAAAGAAATGGGGTCAAGTTGACCCACATTGGAAAGTTTGTGATAATGGAGAAATGCAGTCTCCTATTGATCTTCTTGACGGCAGGGTGCAGGTTTTCCCTAACTTGGGGAAATTGAAAAGGGATTACAAACAAGCCCCTGCTACTATCAAGAACAGAGGGCATGACATTACGGTGAGGTGGAAAGAAGACGCAGGGAAAATCAATATTAATGGTACAGACTATAATCTGCTACAATGTCATTGGCATTCACCTTCTGAACACACATTCAATGGATCAAGGTATGCTTTGGAGCTCCATGTTGTTCATACAAGCTCTACTGGAAAGATTGCTGTTATTGGAATTGTATACAAATATGGCCGACCTGATCCCTTCCTTTCAAAGCTGTTCCACCACATAAAATCAGTTGGGAAAGAAGAGGTTGATATTGGCATTATTAATCCAGGAGACATCAAGTTTGGAAGCAGAAAGTATTACAGATATATTGGTTCTCTCACTGTTCCTCCCTGCACTGAGGGTGTAATTTGGACAATAGTCAAAAAGGTGAGGACAGTTTCAAGGGAGCAAGTGAGAGCACTAAGGGAGACTGTTCATGATGTAAGTTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase LSM

Protein Analysis

274

Amino Acids

31.17

Weight (kDa)

9.23

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Carb_anhydrase PF00194 71 - 269 1.3e-38 Eukaryotic-type carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20990
fragaria_vesca FvH4_6g24590 FvH4_6g24590 FvH4_6g24590
malus_domestica MD12G1083000.v1.1 MD14G1078100.v1.1
prunus_persica Prupe.7G052800_v2.0.a1
pyrus_communis pycom12g06990 pycom14g06650
rosa_chinensis RchiOBHm_Chr3g0483901
rosa_laevigata RLG00000023253
rosa_multiflora Rmu_sc0002252.1_g000013
rosa_roxburghii Rroxscaffold_6G00398060
rosa_rugosa Rorug03G0208600
rosa_samantha Rh3AG257300 Rh3BG293700 Rh3CG292000 Rh3DG287100
rosa_wichuraiana Rw3G023260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccI GTMKAC 1 cut(s) 561
AciI CCGC 1 cut(s) 144
AclWI GGATC 2 cut(s) 496, 575
AcoI YGGCCR 1 cut(s) 571
AfaI GTAC 1 cut(s) 430
AfiI CCNNNNNNNGG 2 cut(s) 319, 320
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 6 cut(s) 19, 46, 331, 484, 594, 771
AjnI CCWGG 1 cut(s) 655
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 3 cut(s) 508, 528, 598
AluI AGCT 3 cut(s) 508, 528, 598
Alw21I GWGCWC 2 cut(s) 510, 790
Alw26I GTCTC 3 cut(s) 279, 654, 791
AlwI GGATC 2 cut(s) 496, 575
AoxI GGCC 1 cut(s) 571
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
AseI ATTAAT 2 cut(s) 423, 651
AsiGI ACCGGT 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 5 cut(s) 121, 182, 400, 456, 769
AvaII GGWCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 510
BbsI GAAGAC 1 cut(s) 408
Bbv12I GWGCWC 2 cut(s) 510, 790
BccI CCATC 1 cut(s) 123
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 657
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 3 cut(s) 279, 654, 791
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 160, 657
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 97, 202
BmrFI CCNGG 2 cut(s) 160, 657
BoxI GACNNNNGTC 1 cut(s) 746
BpiI GAAGAC 1 cut(s) 408
BpuMI CCSGG 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 159
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 320
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 538
BseBI CCWGG 1 cut(s) 657
BseDI CCNNGG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 319, 320
BseMII CTCAG 1 cut(s) 717
BseNI ACTGG 1 cut(s) 538
BseRI GAGGAG 2 cut(s) 92, 95
BsgI GTGCAG 2 cut(s) 323, 706
BshFI GGCC 1 cut(s) 573
BshTI ACCGGT 1 cut(s) 203
BsiHKAI GWGCWC 2 cut(s) 510, 790
BsiSI CCGG 2 cut(s) 159, 204
BslI CCNNNNNNNGG 2 cut(s) 319, 320
BsmAI GTCTC 3 cut(s) 279, 654, 791
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 1 cut(s) 573
Bsp1286I GDGCHC 2 cut(s) 510, 790
Bsp143I GATC 3 cut(s) 283, 488, 580
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 573
BspCNI CTCAG 1 cut(s) 718
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 2 cut(s) 97, 202
BspMI ACCTGC 1 cut(s) 295
BspPI GGATC 2 cut(s) 496, 575
BspQI GCTCTTC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 538
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 3 cut(s) 283, 488, 580
BssNAI GTATAC 1 cut(s) 562
Bst1107I GTATAC 1 cut(s) 562
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 4 cut(s) 388, 712, 766, 802
Bst6I CTCTTC 2 cut(s) 83, 624
BstDEI CTNAG 2 cut(s) 726, 791
BstKTI GATC 3 cut(s) 286, 491, 583
BstMAI GTCTC 3 cut(s) 279, 654, 791
BstMBI GATC 3 cut(s) 283, 488, 580
BstNI CCWGG 1 cut(s) 657
BstPAI GACNNNNGTC 1 cut(s) 746
BstSCI CCNGG 2 cut(s) 158, 655
BstV2I GAAGAC 1 cut(s) 408
BstXI CCANNNNNNTGG 1 cut(s) 222
BstZ17I GTATAC 1 cut(s) 562
BsuRI GGCC 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 708, 723
BveI ACCTGC 1 cut(s) 295
CciI TCATGA 1 cut(s) 805
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 212
CseI GACGC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 429
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 3 cut(s) 377, 512, 806
CviJI RGCY 6 cut(s) 143, 350, 508, 528, 573, 598
CviKI_1 RGCY 6 cut(s) 143, 350, 508, 528, 573, 598
CviQI GTAC 1 cut(s) 429
DdeI CTNAG 2 cut(s) 726, 791
DpnI GATC 3 cut(s) 285, 490, 582
DpnII GATC 3 cut(s) 283, 488, 580
EaeI YGGCCR 1 cut(s) 571
Eam1104I CTCTTC 2 cut(s) 83, 624
EarI CTCTTC 2 cut(s) 83, 624
Ecl136II GAGCTC 1 cut(s) 508
Eco24I GRGCYC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 212
Eco53kI GAGCTC 1 cut(s) 508
EcoICRI GAGCTC 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 510
FaeI CATG 3 cut(s) 380, 515, 809
FalI AAGNNNNNCTT 2 cut(s) 484, 516
FatI CATG 3 cut(s) 376, 511, 805
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 573
HapII CCGG 2 cut(s) 159, 204
HgaI GACGC 1 cut(s) 413
Hin1II CATG 3 cut(s) 380, 515, 809
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 1 cut(s) 155
HpaII CCGG 2 cut(s) 159, 204
HphI GGTGA 5 cut(s) 121, 182, 400, 456, 769
Hpy166II GTNNAC 2 cut(s) 235, 562
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 3 cut(s) 290, 364, 806
Hpy8I GTNNAC 2 cut(s) 235, 562
HpyAV CCTTC 2 cut(s) 477, 595
HpyCH4III ACNGT 4 cut(s) 388, 712, 766, 802
HpyCH4V TGCA 4 cut(s) 138, 271, 304, 723
HpyF3I CTNAG 2 cut(s) 726, 791
Hsp92II CATG 3 cut(s) 380, 515, 809
Kzo9I GATC 3 cut(s) 283, 488, 580
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 3 cut(s) 505, 513, 775
MalI GATC 3 cut(s) 285, 490, 582
MboI GATC 3 cut(s) 283, 488, 580
MboII GAAGA 5 cut(s) 34, 70, 278, 413, 641
MhlI GDGCHC 2 cut(s) 510, 790
MluCI AATT 4 cut(s) 12, 326, 555, 735
MlyI GAGTC 1 cut(s) 149
MseI TTAA 2 cut(s) 423, 651
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 2 cut(s) 159, 204
MspR9I CCNGG 2 cut(s) 160, 657
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 1 cut(s) 657
NciI CCSGG 1 cut(s) 160
NdeII GATC 3 cut(s) 283, 488, 580
NlaIII CATG 3 cut(s) 380, 515, 809
NlaIV GGNNCC 2 cut(s) 97, 202
PagI TCATGA 1 cut(s) 805
PciSI GCTCTTC 1 cut(s) 83
PctI GAATGC 1 cut(s) 460
PfoI TCCNGGA 1 cut(s) 655
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PshAI GACNNNNGTC 1 cut(s) 746
PshBI ATTAAT 2 cut(s) 423, 651
Psp124BI GAGCTC 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 655
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 2 cut(s) 97, 202
PspPI GGNCC 1 cut(s) 212
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 510
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 2 cut(s) 423, 651
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 3 cut(s) 283, 488, 580
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 160, 657
SduI GDGCHC 2 cut(s) 510, 790
SinI GGWCC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 386
Sse9I AATT 4 cut(s) 12, 326, 555, 735
SsiI CCGC 1 cut(s) 144
SspI AATATT 1 cut(s) 421
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 2 cut(s) 158, 655
TaaI ACNGT 4 cut(s) 388, 712, 766, 802
TasI AATT 4 cut(s) 12, 326, 555, 735
TauI GCSGC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 423, 651
Tru9I TTAA 2 cut(s) 423, 651
TscAI CASTG 2 cut(s) 715, 730
TspDTI ATGAA 4 cut(s) 111, 189, 509, 794
TspRI CASTG 2 cut(s) 715, 730
VpaK11BI GGWCC 1 cut(s) 212
VspI ATTAAT 2 cut(s) 423, 651
XmiI GTMKAC 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.