pycom12g06990

carbonic anhydrase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0012107
Physical Location & Seq
Reverse (-)
7268220 .. 7270337
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g06990.3

Sequence Viewer

Length: 747 bp
ATGTATGGGGCAGGTGATGAAACTCCATTTACTTATCTTGAAGGAACTGGTAAAGGACCAAAGAAATGGGGACAAATTGACCCTCATTGGAAAGTTTGTGATACTGGAAAATTGCAGTCTCCAATCGATCTTCTTGACCAAAGGGTGCAGGTTTTCCCTCACTTGGGGAAATTGATAAGGGATTACAAACCAGCTCCTGCTACTGTGAAGAACCGAGGTCATGACATCACGATGAGGTGGAACGGAGATGCAGGAAAAATCAACATAAATGGGACTGATTATAGACTGTTACAATGTCATTGGCATTCACCCTCTGAACATACGTTTAATGGATCAAGGTATGCTTTGGAGTTTCATGTTATTCATTTAAGCTCTACCGGAAAGATTGCTGTAATTGGAATTGTGTACAAATATGGTCGACCTGATCCCCTCCTTTCAAAGCTATTCCACCACATAAAATCGGTTGGGAAAGAAGAGGAGGTTGACGTAGGGGTTATTAATCCTGGGGATATTAAGTTCGGAAGCAGAAAGTATTACAGATATATCGGTTCTCTTACCGTTCCTCCGTGCACCGAGGGAGTAATTTGGACAATCGTCAAAAAGGTGAGGACAGTTTCAAGGGAGCAAGTACATGCACTAAGGGAGGCTGTACATGATGGATTCGAGATGAATGCAAGGCCAACTCAAGAATTGGATGGAAGACCAGTGCTGTTATACACTCCAAGGGACAATGGAGGTTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase LSM

Protein Analysis

249

Amino Acids

27.9

Weight (kDa)

9.11

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20990
fragaria_vesca FvH4_6g24590 FvH4_6g24590 FvH4_6g24590
malus_domestica MD12G1083000.v1.1 MD14G1078100.v1.1
prunus_persica Prupe.7G052800_v2.0.a1
pyrus_communis pycom12g06990 pycom14g06650
rosa_chinensis RchiOBHm_Chr3g0483901
rosa_laevigata RLG00000023253
rosa_multiflora Rmu_sc0002252.1_g000013
rosa_roxburghii Rroxscaffold_6G00398060
rosa_rugosa Rorug03G0208600
rosa_samantha Rh3AG257300 Rh3BG293700 Rh3CG292000 Rh3DG287100
rosa_wichuraiana Rw3G023260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2
Acc36I ACCTGC 2 cut(s) 2, 139
AccI GTMKAC 1 cut(s) 418
AclWI GGATC 2 cut(s) 340, 419
AfaI GTAC 3 cut(s) 407, 630, 651
AfiI CCNNNNNNNGG 2 cut(s) 163, 164
AgsI TTSAA 3 cut(s) 41, 438, 618
AjnI CCWGG 1 cut(s) 502
AloI GAACNNNNNNTCC 2 cut(s) 500, 532
AluBI AGCT 3 cut(s) 194, 372, 442
AluI AGCT 3 cut(s) 194, 372, 442
Alw21I GWGCWC 1 cut(s) 572
Alw26I GTCTC 1 cut(s) 123
Alw44I GTGCAC 1 cut(s) 568
AlwI GGATC 2 cut(s) 340, 419
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 1 cut(s) 677
ApaLI GTGCAC 1 cut(s) 568
AseI ATTAAT 1 cut(s) 498
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 26, 300, 616
AvaII GGWCC 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 706
Bbv12I GWGCWC 1 cut(s) 572
BccI CCATC 2 cut(s) 650, 689
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 123
BfuAI ACCTGC 2 cut(s) 2, 139
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 504
BmsI GCATC 1 cut(s) 238
BoxI GACNNNNGTC 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 706
BpuEI CTTGAG 1 cut(s) 669
Bsa29I ATCGAT 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 214, 503, 573, 722
BsaWI WCCGGW 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 164
Bse1I ACTGG 3 cut(s) 52, 109, 704
BseBI CCWGG 1 cut(s) 504
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 4 cut(s) 214, 503, 573, 722
BseGI GGATG 1 cut(s) 700
BseLI CCNNNNNNNGG 2 cut(s) 163, 164
BseNI ACTGG 3 cut(s) 52, 109, 704
BseRI GAGGAG 1 cut(s) 491
BseSI GKGCMC 1 cut(s) 572
BsgI GTGCAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 679
BshVI ATCGAT 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 572
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 3 cut(s) 84, 286, 740
BslI CCNNNNNNNGG 2 cut(s) 163, 164
BsmAI GTCTC 1 cut(s) 123
BsmFI GGGAC 3 cut(s) 84, 286, 740
BsmI GAATGC 2 cut(s) 304, 676
BsnI GGCC 1 cut(s) 679
Bsp1286I GDGCHC 1 cut(s) 572
Bsp1407I TGTACA 2 cut(s) 405, 649
Bsp143I GATC 3 cut(s) 127, 332, 424
BspANI GGCC 1 cut(s) 679
BspDI ATCGAT 1 cut(s) 126
BspHI TCATGA 1 cut(s) 220
BspMI ACCTGC 2 cut(s) 2, 139
BspPI GGATC 2 cut(s) 340, 419
BsrGI TGTACA 2 cut(s) 405, 649
BsrI ACTGG 3 cut(s) 52, 109, 704
BssECI CCNNGG 4 cut(s) 214, 503, 573, 722
BssMI GATC 3 cut(s) 127, 332, 424
BssT1I CCWWGG 1 cut(s) 722
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 4 cut(s) 205, 288, 559, 613
Bst6I CTCTTC 1 cut(s) 468
BstAUI TGTACA 2 cut(s) 405, 649
BstDEI CTNAG 1 cut(s) 638
BstF5I GGATG 1 cut(s) 700
BstKTI GATC 3 cut(s) 130, 335, 427
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 3 cut(s) 127, 332, 424
BstNI CCWGG 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 635
BstPAI GACNNNNGTC 1 cut(s) 593
BstSCI CCNGG 1 cut(s) 502
BstSLI GKGCMC 1 cut(s) 572
BstV2I GAAGAC 1 cut(s) 706
BstXI CCANNNNNNTGG 1 cut(s) 66
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 1 cut(s) 679
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 1 cut(s) 700
BtsIMutI CAGTG 1 cut(s) 711
BveI ACCTGC 2 cut(s) 2, 139
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 56
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 3 cut(s) 406, 629, 650
CviAII CATG 4 cut(s) 221, 356, 632, 653
CviJI RGCY 5 cut(s) 194, 372, 442, 647, 679
CviKI_1 RGCY 5 cut(s) 194, 372, 442, 647, 679
CviQI GTAC 3 cut(s) 406, 629, 650
DdeI CTNAG 1 cut(s) 638
DpnI GATC 3 cut(s) 129, 334, 426
DpnII GATC 3 cut(s) 127, 332, 424
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 722
Eco47I GGWCC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 722
ErhI CCWWGG 1 cut(s) 722
FaeI CATG 4 cut(s) 224, 359, 635, 656
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FaqI GGGAC 3 cut(s) 84, 286, 740
FatI CATG 4 cut(s) 220, 355, 631, 652
FblI GTMKAC 1 cut(s) 418
FokI GGATG 1 cut(s) 707
HaeIII GGCC 1 cut(s) 679
HapII CCGG 1 cut(s) 378
Hin1II CATG 4 cut(s) 224, 359, 635, 656
HincII GTYRAC 2 cut(s) 419, 484
HindII GTYRAC 2 cut(s) 419, 484
HinfI GANTC 1 cut(s) 660
HpaII CCGG 1 cut(s) 378
HphI GGTGA 3 cut(s) 26, 300, 616
Hpy166II GTNNAC 4 cut(s) 406, 419, 484, 570
Hpy188I TCNGA 2 cut(s) 316, 521
Hpy188III TCNNGA 6 cut(s) 38, 134, 221, 229, 664, 686
Hpy8I GTNNAC 4 cut(s) 406, 419, 484, 570
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 4 cut(s) 205, 288, 559, 613
HpyCH4IV ACGT 2 cut(s) 323, 486
HpyCH4V TGCA 6 cut(s) 115, 148, 251, 570, 635, 674
HpyF3I CTNAG 1 cut(s) 638
HpySE526I ACGT 2 cut(s) 323, 486
Hsp92II CATG 4 cut(s) 224, 359, 635, 656
Kzo9I GATC 3 cut(s) 127, 332, 424
LmnI GCTCC 2 cut(s) 199, 622
LweI GCATC 1 cut(s) 238
MaeII ACGT 2 cut(s) 323, 486
MaeIII GTNAC 1 cut(s) 288
MalI GATC 3 cut(s) 129, 334, 426
MboI GATC 3 cut(s) 127, 332, 424
MboII GAAGA 4 cut(s) 122, 220, 485, 711
MhlI GDGCHC 1 cut(s) 572
MluCI AATT 7 cut(s) 75, 110, 170, 393, 399, 582, 689
MseI TTAA 5 cut(s) 327, 368, 498, 513, 745
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 504
Mva1269I GAATGC 2 cut(s) 304, 676
MvaI CCWGG 1 cut(s) 504
NdeII GATC 3 cut(s) 127, 332, 424
NlaIII CATG 4 cut(s) 224, 359, 635, 656
NspI RCATGY 1 cut(s) 635
PagI TCATGA 1 cut(s) 220
PaqCI CACCTGC 1 cut(s) 2
PctI GAATGC 2 cut(s) 304, 676
PfeI GAWTC 1 cut(s) 660
PshAI GACNNNNGTC 1 cut(s) 593
PshBI ATTAAT 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 502
PspGI CCWGG 1 cut(s) 502
PspPI GGNCC 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 197
RsaI GTAC 3 cut(s) 407, 630, 651
RsaNI GTAC 3 cut(s) 406, 629, 650
RseI CAYNNNNRTG 1 cut(s) 230
SalI GTCGAC 1 cut(s) 417
SaqAI TTAA 5 cut(s) 327, 368, 498, 513, 745
Sau3AI GATC 3 cut(s) 127, 332, 424
Sau96I GGNCC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 1 cut(s) 572
SfaNI GCATC 1 cut(s) 238
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
Sse9I AATT 7 cut(s) 75, 110, 170, 393, 399, 582, 689
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 1 cut(s) 722
TaaI ACNGT 4 cut(s) 205, 288, 559, 613
TaiI ACGT 2 cut(s) 326, 489
TaqI TCGA 3 cut(s) 126, 418, 663
TasI AATT 7 cut(s) 75, 110, 170, 393, 399, 582, 689
TatI WGTACW 3 cut(s) 405, 628, 649
TfiI GAWTC 1 cut(s) 660
Tru1I TTAA 5 cut(s) 327, 368, 498, 513, 745
Tru9I TTAA 5 cut(s) 327, 368, 498, 513, 745
TscAI CASTG 1 cut(s) 711
TspDTI ATGAA 4 cut(s) 33, 344, 353, 683
TspGWI ACGGA 2 cut(s) 258, 555
TspRI CASTG 1 cut(s) 711
VneI GTGCAC 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 56
VspI ATTAAT 1 cut(s) 498
XceI RCATGY 1 cut(s) 635
XmiI GTMKAC 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.