Rh3CG292000

carbonic anhydrase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0012107
Physical Location & Seq
Forward (+)
29717029 .. 29721706
4678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG292000.1

Sequence Viewer

Length: 819 bp
ATGCCATTTCCAATTTTGAAGCAACGAAGCATTATGTGGTTCTTCAACCCCAACCCCAAACCCAACTTGCTCTTCTTTCTCATTTTGGGTTCCCTCCTCCTCTTATCCCATCATTCCTTTTTCACCATTTGCAGAGCCGCACTTGATGACTCCGGGGAAGTTGGTGATGAACTTCCGTTTACTTATGTTGAGGGAACTGGTAAAGGACCAAAGAAATGGGGTCAAATTGACCCACATTGGAAGGTTTGTGACAATGGAGAAATGCAGTCTCCTATTGATCTTCTTGACGGCAGGGTGCAGGTTTTCCCTAACTTGGGGAAATTGAAAAGGGATTACAAACAAGCCCCTGCTACTATCAAGAACAGAGGGCATGACATTACGGTGAGGTGGAAAGAAGACGCAGGGAAAATCAATATTAATGGGACAGACTATAATCTGCTACAATGTCATTGGCATTCACCTTCTGAACACACATTCAATGGATCAAGGTATGCTTTGGAGCTTCATGTTGTTCATACAAGCTCTACTGGAAAGATTGCTGTTATTGGAATTGTATACAAATATGGCCGACCTGATCCCTTCCTTTCAAAGCTGTTCCACCACATAAAATCAGTTGGGAAAGAAGAGGTTGATATTGGCATTATTAATCCAGGAGACATCAAGTTTGGAAGCAGAAAGTATTACAGATATATTGGTTCTCTCACTGTTCCTCCCTGCACTGAGGGTGTAATTTGGACAATAGTCAAAAAGGTGAGGACAGTTTCAAGGGAGCAAGTGAGAGCACTAAGGGAGACTGTTCATGATGTAAGTTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Carb_anhydrase LSM

Protein Analysis

272

Amino Acids

30.97

Weight (kDa)

9.23

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Carb_anhydrase PF00194 69 - 267 1.3e-38 Eukaryotic-type carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20990
fragaria_vesca FvH4_6g24590 FvH4_6g24590 FvH4_6g24590
malus_domestica MD12G1083000.v1.1 MD14G1078100.v1.1
prunus_persica Prupe.7G052800_v2.0.a1
pyrus_communis pycom12g06990 pycom14g06650
rosa_chinensis RchiOBHm_Chr3g0483901
rosa_laevigata RLG00000023253
rosa_multiflora Rmu_sc0002252.1_g000013
rosa_roxburghii Rroxscaffold_6G00398060
rosa_rugosa Rorug03G0208600
rosa_samantha Rh3AG257300 Rh3BG293700 Rh3CG292000 Rh3DG287100
rosa_wichuraiana Rw3G023260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 289
AccI GTMKAC 1 cut(s) 555
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 490, 569
AcoI YGGCCR 1 cut(s) 565
AfiI CCNNNNNNNGG 2 cut(s) 313, 314
AgsI TTSAA 6 cut(s) 19, 46, 325, 478, 588, 765
AjnI CCWGG 1 cut(s) 649
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 3 cut(s) 502, 522, 592
AluI AGCT 3 cut(s) 502, 522, 592
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 3 cut(s) 273, 648, 785
AlwI GGATC 2 cut(s) 490, 569
AoxI GGCC 1 cut(s) 565
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
AseI ATTAAT 2 cut(s) 417, 645
AspS9I GGNCC 1 cut(s) 206
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 5 cut(s) 115, 176, 394, 450, 763
AvaII GGWCC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 784
BccI CCATC 1 cut(s) 117
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 651
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 3 cut(s) 273, 648, 785
BfuAI ACCTGC 1 cut(s) 289
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 154, 651
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 154, 651
BoxI GACNNNNGTC 1 cut(s) 740
BpiI GAAGAC 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 314
Bse1I ACTGG 2 cut(s) 202, 532
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 313, 314
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 2 cut(s) 202, 532
BseRI GAGGAG 2 cut(s) 86, 89
BsgI GTGCAG 2 cut(s) 317, 700
BshFI GGCC 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 784
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 2 cut(s) 313, 314
BsmAI GTCTC 3 cut(s) 273, 648, 785
BsmFI GGGAC 1 cut(s) 436
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 1 cut(s) 567
Bsp1286I GDGCHC 1 cut(s) 784
Bsp143I GATC 3 cut(s) 277, 482, 574
BspACI CCGC 1 cut(s) 138
BspANI GGCC 1 cut(s) 567
BspCNI CTCAG 1 cut(s) 712
BspHI TCATGA 1 cut(s) 799
BspLI GGNNCC 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 2 cut(s) 490, 569
BspQI GCTCTTC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 202, 532
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 3 cut(s) 277, 482, 574
BssNAI GTATAC 1 cut(s) 556
Bst1107I GTATAC 1 cut(s) 556
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 4 cut(s) 382, 706, 760, 796
Bst6I CTCTTC 2 cut(s) 77, 618
BstDEI CTNAG 2 cut(s) 720, 785
BstKTI GATC 3 cut(s) 280, 485, 577
BstMAI GTCTC 3 cut(s) 273, 648, 785
BstMBI GATC 3 cut(s) 277, 482, 574
BstNI CCWGG 1 cut(s) 651
BstPAI GACNNNNGTC 1 cut(s) 740
BstSCI CCNGG 2 cut(s) 152, 649
BstV2I GAAGAC 1 cut(s) 402
BstXI CCANNNNNNTGG 1 cut(s) 216
BstZ17I GTATAC 1 cut(s) 556
BsuRI GGCC 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 702, 717
BveI ACCTGC 1 cut(s) 289
CciI TCATGA 1 cut(s) 799
Cfr13I GGNCC 1 cut(s) 206
CseI GACGC 1 cut(s) 407
CviAII CATG 3 cut(s) 371, 506, 800
CviJI RGCY 6 cut(s) 137, 344, 502, 522, 567, 592
CviKI_1 RGCY 6 cut(s) 137, 344, 502, 522, 567, 592
DdeI CTNAG 2 cut(s) 720, 785
DpnI GATC 3 cut(s) 279, 484, 576
DpnII GATC 3 cut(s) 277, 482, 574
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 2 cut(s) 77, 618
EarI CTCTTC 2 cut(s) 77, 618
Eco47I GGWCC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 649
FaeI CATG 3 cut(s) 374, 509, 803
FalI AAGNNNNNCTT 2 cut(s) 478, 510
FaqI GGGAC 1 cut(s) 436
FatI CATG 3 cut(s) 370, 505, 799
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 1 cut(s) 567
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 407
Hin1II CATG 3 cut(s) 374, 509, 803
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 153
HphI GGTGA 5 cut(s) 115, 176, 394, 450, 763
Hpy166II GTNNAC 2 cut(s) 180, 556
Hpy188I TCNGA 1 cut(s) 466
Hpy188III TCNNGA 3 cut(s) 284, 358, 800
Hpy8I GTNNAC 2 cut(s) 180, 556
HpyAV CCTTC 3 cut(s) 235, 471, 589
HpyCH4III ACNGT 4 cut(s) 382, 706, 760, 796
HpyCH4V TGCA 4 cut(s) 132, 265, 298, 717
HpyF3I CTNAG 2 cut(s) 720, 785
Hsp92II CATG 3 cut(s) 374, 509, 803
Kzo9I GATC 3 cut(s) 277, 482, 574
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 2 cut(s) 499, 769
MaeIII GTNAC 1 cut(s) 248
MalI GATC 3 cut(s) 279, 484, 576
MboI GATC 3 cut(s) 277, 482, 574
MboII GAAGA 5 cut(s) 34, 64, 272, 407, 635
MhlI GDGCHC 1 cut(s) 784
MluCI AATT 5 cut(s) 12, 225, 320, 549, 729
MlyI GAGTC 1 cut(s) 143
MseI TTAA 2 cut(s) 417, 645
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 154, 651
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 1 cut(s) 651
NciI CCSGG 1 cut(s) 154
NdeII GATC 3 cut(s) 277, 482, 574
NlaIII CATG 3 cut(s) 374, 509, 803
NlaIV GGNNCC 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 248
PagI TCATGA 1 cut(s) 799
PciSI GCTCTTC 1 cut(s) 77
PctI GAATGC 1 cut(s) 454
PfoI TCCNGGA 1 cut(s) 649
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PshAI GACNNNNGTC 1 cut(s) 740
PshBI ATTAAT 2 cut(s) 417, 645
Psp6I CCWGG 1 cut(s) 649
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 380
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 2 cut(s) 417, 645
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 3 cut(s) 277, 482, 574
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 154, 651
SduI GDGCHC 1 cut(s) 784
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 380
Sse9I AATT 5 cut(s) 12, 225, 320, 549, 729
SsiI CCGC 1 cut(s) 138
SspI AATATT 1 cut(s) 415
StyD4I CCNGG 2 cut(s) 152, 649
TaaI ACNGT 4 cut(s) 382, 706, 760, 796
TasI AATT 5 cut(s) 12, 225, 320, 549, 729
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 417, 645
Tru9I TTAA 2 cut(s) 417, 645
TscAI CASTG 2 cut(s) 709, 724
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 4 cut(s) 183, 494, 503, 788
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 2 cut(s) 709, 724
VpaK11BI GGWCC 1 cut(s) 206
VspI ATTAAT 2 cut(s) 417, 645
XmiI GTMKAC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.