Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013827

Physical Location & Seq

Genomic Coordinates Forward (+)

20258199 .. 20261421

Gene Structure 3223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTCATGGGTCGTCCAATCCATCTATATTTCAGAAATTACATGGGCAGTCCAGCCTCATTCCTAAGCTTTCTCCCAACTTGAACAGCAGAAACTATGGTTTAACTGGCGCTTATGCAAATGGAGGCTTGCAAGGACCCCTGCTCCCAGCTTGCCAAAGCACTCCCCTGGCACAGCTCTCGCCGTTGTCTACCATTTTGGTACAGGCTCCGGCAGAGAAAGGGGCTGCTGGTTTTGCTGTTGATTTCCTTATGGGAGGTGTATCTGCTGCTGTTTCTAAAACAGCTGCTGCTCCAATTGAGCGTATTAAGCTATTAATCCAGAACCAGGATGAGATGATCAAGGCTGGTCGTCTTTCTGAACCATACAAGGGGATTACTGACTGCTTTGCCCGAACAATGAAGGATGAGGGTGTCATTGCTCTGTGGAGAGGAAATACTGCTAATGTTATCAGATACTTTCCTACCCAGGCCTTAAACTTTGCTTTCAAGGATTATTTCAAGAGGCTTTTCAACTTCAAGAAGGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAACCTGGCGTCTGGTGGTGCTGCTGGTGCTTCATCTCTTCTGTTTGTTTATTCCTTGGACTATGCTAGAACACGTTTGGCAAATGATGCTAAAGCTGCCAAAAAGGGTGGGGAGAGGCAGTTTAATGGTATGATCGATGTGTACAAGAAAACCCTAAAGTCTGATGGTATTGCTGGGCTGTATCGTGGATTTAACATCTCATGTGTTGGGATTATTGTGTATCGTGGGCTCTACTTTGGAATGTATGATTCTCTGAAACCTGTGGTTCTGGTGGGTAGCTTGCAGGATAGTTTCTTTGCTAGTTTTTTGCTCGGATGGGGAATTACAATTGGAGCTGGATTGGCTTCATACCCAATTGACACAGTGCGCAGAAGGATGATGATGACATCAGGAGAAGCAGTAAAATATAAAAGCTCTTTGGTTGCCTTTAAGCAAATTGTCAAAAATGAGGGTGCTAAATCTCTATTTAAAGGTGCTGGAGCAAACATATTGCGTGCTGTTGCAGGTGCTGGTGTGCTTGCTGGCTATGACAAGCTGCAAGTCATTGTTCTTGGCAAGAAGTATGGATCTGGTGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

380

Amino Acids

40.59

Weight (kDa)

9.86

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	78 - 174	8.2e-26	Mitochondrial carrier protein
Mito_carr	PF00153	182 - 274	4.2e-21	Mitochondrial carrier protein
Mito_carr	PF00153	282 - 370	2.2e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28390 AT4G28390
fragaria_vesca	FvH4_6g26500
malus_domestica	MD09G1244400.v1.1 MD17G1236400.v1.1
prunus_persica	Prupe.3G139400_v2.0.a1
pyrus_communis	pycom17g23950
rosa_chinensis	RchiOBHm_Chr2g0127661
rosa_laevigata	RLG00000018944
rosa_multiflora	Rmu_sc0021082.1_g000001 Rmu_ssc0000200.1_g000004
rosa_roxburghii	Rroxscaffold_2G00116690
rosa_rugosa	Rorug02G0271800 Rorug02G0271900 Rorug02G0272000
rosa_samantha	Rh2BG333100
rosa_wichuraiana	Rw2G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1052
Acc16I	TGCGCA	1 cut(s)	926
Acc36I	ACCTGC	1 cut(s)	1052
AccI	GTMKAC	1 cut(s)	191
AclWI	GGATC	1 cut(s)	1132
AcyI	GRCGYC	1 cut(s)	566
AfaI	GTAC	2 cut(s)	204, 701
AfiI	CCNNNNNNNGG	2 cut(s)	328, 371
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	5 cut(s)	85, 490, 502, 514, 520
AjnI	CCWGG	4 cut(s)	168, 327, 468, 561
AlwI	GGATC	1 cut(s)	1132
AlwNI	CAGNNNCTG	2 cut(s)	290, 1067
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	7 cut(s)	227, 269, 287, 290, 578, 653, 1093
AseI	ATTAAT	1 cut(s)	317
AspLEI	GCGC	2 cut(s)	113, 927
AspS9I	GGNCC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	789
BbvI	GCAGC	7 cut(s)	214, 256, 274, 277, 565, 640, 1080
BccI	CCATC	4 cut(s)	31, 527, 716, 867
BceAI	ACGGC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciT130I	CCWGG	4 cut(s)	170, 329, 470, 563
BclI	TGATCA	1 cut(s)	339
BfaI	CTAG	2 cut(s)	624, 858
BfoI	RGCGCY	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	1052
BisI	GCNGC	7 cut(s)	228, 270, 288, 291, 579, 654, 1094
BlsI	GCNGC	7 cut(s)	229, 271, 289, 292, 580, 655, 1095
Bme1390I	CCNGG	4 cut(s)	170, 329, 470, 563
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	3 cut(s)	139, 210, 560
BmrFI	CCNGG	4 cut(s)	170, 329, 470, 563
BmsI	GCATC	1 cut(s)	634
BpmI	CTGGAG	1 cut(s)	1056
Bpu10I	CCTNAGC	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	693
BsaHI	GRCGYC	1 cut(s)	566
BsaJI	CCNNGG	3 cut(s)	168, 468, 612
BsaXI	ACNNNNNCTCC	6 cut(s)	129, 159, 662, 692, 942, 972
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 371
Bse1I	ACTGG	2 cut(s)	112, 545
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	4 cut(s)	170, 329, 470, 563
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	3 cut(s)	168, 468, 612
BseGI	GGATG	4 cut(s)	337, 412, 878, 939
BseLI	CCNNNNNNNGG	2 cut(s)	328, 371
BseMI	GCAATG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	112, 545
BseXI	GCAGC	7 cut(s)	214, 256, 274, 277, 565, 640, 1080
BseYI	CCCAGC	3 cut(s)	148, 554, 731
BshFI	GGCC	1 cut(s)	473
BshVI	ATCGAT	1 cut(s)	693
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	328, 371
BsnI	GGCC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	3 cut(s)	339, 690, 1124
BspANI	GGCC	1 cut(s)	473
BspDI	ATCGAT	1 cut(s)	693
BspLI	GGNNCC	3 cut(s)	139, 210, 560
BspMI	ACCTGC	1 cut(s)	1052
BspPI	GGATC	1 cut(s)	1132
BsrDI	GCAATG	1 cut(s)	417
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	2 cut(s)	112, 545
BssECI	CCNNGG	3 cut(s)	168, 468, 612
BssMI	GATC	3 cut(s)	339, 690, 1124
BssNI	GRCGYC	1 cut(s)	566
BssT1I	CCWWGG	1 cut(s)	612
Bst2UI	CCWGG	4 cut(s)	170, 329, 470, 563
Bst4CI	ACNGT	1 cut(s)	922
Bst6I	CTCTTC	1 cut(s)	600
BstACI	GRCGYC	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstAUI	TGTACA	1 cut(s)	699
BstC8I	GCNNGC	6 cut(s)	131, 154, 839, 1053, 1077, 1081
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	4 cut(s)	337, 412, 878, 939
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	113, 927
BstKTI	GATC	3 cut(s)	342, 693, 1127
BstMBI	GATC	3 cut(s)	339, 690, 1124
BstMWI	GCNNNNNNNGC	6 cut(s)	236, 310, 584, 644, 653, 899
BstNI	CCWGG	4 cut(s)	170, 329, 470, 563
BstSCI	CCNGG	4 cut(s)	168, 327, 468, 561
BstV1I	GCAGC	7 cut(s)	214, 256, 274, 277, 565, 640, 1080
BstX2I	RGATCY	1 cut(s)	1124
BstYI	RGATCY	1 cut(s)	1124
Bsu15I	ATCGAT	1 cut(s)	693
BsuRI	GGCC	1 cut(s)	473
BsuTUI	ATCGAT	1 cut(s)	693
BtsCI	GGATG	4 cut(s)	337, 412, 878, 939
BtsIMutI	CAGTG	1 cut(s)	927
BveI	ACCTGC	1 cut(s)	1052
Cac8I	GCNNGC	6 cut(s)	131, 154, 839, 1053, 1077, 1081
CaiI	CAGNNNCTG	2 cut(s)	290, 1067
CfoI	GCGC	2 cut(s)	113, 927
Cfr13I	GGNCC	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	693
CseI	GACGC	1 cut(s)	555
Csp6I	GTAC	2 cut(s)	203, 700
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	3 cut(s)	8, 44, 759
CviQI	GTAC	2 cut(s)	203, 700
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	3 cut(s)	341, 692, 1126
DpnII	GATC	3 cut(s)	339, 690, 1124
DraI	TTTAAA	1 cut(s)	1027
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	612
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	4 cut(s)	168, 327, 468, 561
EcoT14I	CCWWGG	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	3 cut(s)	11, 47, 762
FatI	CATG	3 cut(s)	7, 43, 758
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	7 cut(s)	228, 270, 288, 291, 579, 654, 1094
FokI	GGATG	4 cut(s)	344, 419, 885, 946
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	7 cut(s)	228, 270, 288, 291, 579, 654, 1094
FspBI	CTAG	2 cut(s)	624, 858
FspI	TGCGCA	1 cut(s)	926
GlaI	GCGC	2 cut(s)	112, 926
GluI	GCNGC	7 cut(s)	228, 270, 288, 291, 579, 654, 1094
GsaI	CCCAGC	3 cut(s)	152, 558, 735
GsuI	CTGGAG	1 cut(s)	1056
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	555
HhaI	GCGC	2 cut(s)	113, 927
Hin1I	GRCGYC	1 cut(s)	566
Hin1II	CATG	3 cut(s)	11, 47, 762
Hin6I	GCGC	2 cut(s)	111, 925
HinP1I	GCGC	2 cut(s)	111, 925
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	806
HpaII	CCGG	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	192, 700
Hpy188I	TCNGA	6 cut(s)	36, 361, 455, 721, 813, 872
Hpy188III	TCNNGA	4 cut(s)	322, 502, 520, 948
Hpy8I	GTNNAC	2 cut(s)	192, 700
HpyAV	CCTTC	3 cut(s)	397, 517, 924
HpyCH4III	ACNGT	1 cut(s)	922
HpyCH4IV	ACGT	1 cut(s)	631
HpyCH4V	TGCA	5 cut(s)	119, 133, 841, 1061, 1096
HpyF10VI	GCNNNNNNNGC	6 cut(s)	236, 310, 584, 644, 653, 899
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	631
Hsp92I	GRCGYC	1 cut(s)	566
Hsp92II	CATG	3 cut(s)	11, 47, 762
HspAI	GCGC	2 cut(s)	111, 925
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	339, 690, 1124
LmnI	GCTCC	5 cut(s)	150, 214, 298, 890, 1037
Lsp1109I	GCAGC	7 cut(s)	214, 256, 274, 277, 565, 640, 1080
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	2 cut(s)	624, 858
MaeII	ACGT	1 cut(s)	631
MalI	GATC	3 cut(s)	341, 692, 1126
MboI	GATC	3 cut(s)	339, 690, 1124
MboII	GAAGA	1 cut(s)	587
MfeI	CAATTG	3 cut(s)	297, 885, 912
MflI	RGATCY	1 cut(s)	1124
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	6 cut(s)	38, 297, 879, 885, 912, 993
MnlI	CCTC	8 cut(s)	68, 119, 251, 403, 425, 498, 666, 1000
MseI	TTAA	9 cut(s)	104, 309, 317, 476, 681, 750, 987, 1026, 1138
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	4 cut(s)	170, 329, 470, 563
MunI	CAATTG	3 cut(s)	297, 885, 912
MvaI	CCWGG	4 cut(s)	170, 329, 470, 563
MwoI	GCNNNNNNNGC	6 cut(s)	236, 310, 584, 644, 653, 899
NdeII	GATC	3 cut(s)	339, 690, 1124
NlaIII	CATG	3 cut(s)	11, 47, 762
NlaIV	GGNNCC	3 cut(s)	139, 210, 560
NsbI	TGCGCA	1 cut(s)	926
PaqCI	CACCTGC	1 cut(s)	1052
PceI	AGGCCT	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	806
PkrI	GCNGC	7 cut(s)	229, 271, 289, 292, 580, 655, 1095
PpuMI	RGGWCCY	1 cut(s)	137
PshBI	ATTAAT	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	4 cut(s)	168, 327, 468, 561
PspFI	CCCAGC	3 cut(s)	148, 554, 731
PspGI	CCWGG	4 cut(s)	168, 327, 468, 561
PspN4I	GGNNCC	3 cut(s)	139, 210, 560
PspPI	GGNCC	1 cut(s)	137
PspPPI	RGGWCCY	1 cut(s)	137
PstNI	CAGNNNCTG	2 cut(s)	290, 1067
PsuI	RGATCY	1 cut(s)	1124
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	2 cut(s)	204, 701
RsaNI	GTAC	2 cut(s)	203, 700
SaqAI	TTAA	9 cut(s)	104, 309, 317, 476, 681, 750, 987, 1026, 1138
SatI	GCNGC	7 cut(s)	228, 270, 288, 291, 579, 654, 1094
Sau3AI	GATC	3 cut(s)	339, 690, 1124
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	4 cut(s)	170, 329, 470, 563
SduI	GDGCHC	1 cut(s)	789
SfaNI	GCATC	1 cut(s)	634
SinI	GGWCC	1 cut(s)	137
Sse9I	AATT	6 cut(s)	38, 297, 879, 885, 912, 993
SseBI	AGGCCT	1 cut(s)	473
SspMI	CTAG	2 cut(s)	624, 858
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	4 cut(s)	168, 327, 468, 561
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	1 cut(s)	922
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	1 cut(s)	693
TasI	AATT	6 cut(s)	38, 297, 879, 885, 912, 993
TatI	WGTACW	1 cut(s)	699
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	9 cut(s)	104, 309, 317, 476, 681, 750, 987, 1026, 1138
Tru9I	TTAA	9 cut(s)	104, 309, 317, 476, 681, 750, 987, 1026, 1138
TscAI	CASTG	1 cut(s)	927
TseI	GCWGC	7 cut(s)	227, 269, 287, 290, 578, 653, 1093
TspDTI	ATGAA	3 cut(s)	416, 579, 894
TspRI	CASTG	1 cut(s)	927
VpaK11BI	GGWCC	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	2 cut(s)	624, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.