Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013827

Physical Location & Seq

Genomic Coordinates Forward (+)

14719945 .. 14723323

Gene Structure 3379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G139400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTGATGGGTCATCCCATCCATTGGTATTTCAGAAGATACATGGGCAGTCTTCTCTCATTTCTAGGCTTTCCCCCAACTTGCACACAAGAAACCATGGTGTGACTGGTGCTTATGCCAATGGAGGTTTGCAGAGGCCCCTTCTAACATTTGAAAGCACTGCCCTTGCACAAGTCTCTCCTTTGCCCCCCATTGTGGTACAGGCTCCAGTAGAGAAAGGTGCAGCTGGTTTTGCTGTGGATTTCCTCATGGGAGGTGTATCTGCTGCTGTTTCCAAAACCGCAGCTGCTCCAATTGAGCGTGTTAAACTACTAATACAGAATCAGGATGAGATGATCAAGGCTGGTCGGCTTTCTCAACCATACAAGGGTATAACTGACTGCTTTGCCCGGACAATTAAGGATGAGGGTGTCCTTGCTCTGTGGAGAGGAAACACTGCTAATGTTATCAGATACTTTCCTACCCAGGCCTTAAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAGGATAAAGATGGTTACTGGAAGTGGTTCGCTGGAAATCTGGCATCAGGTGGTGCTGCTGGTGCTTCATCTCTTCTTTTTGTATATTCTCTGGACTATGCAAGAACACGTTTGGCAAATGACGCCAAGGCTGCCAAAAAGGGTGGTGAGAGGCAGTTTAATGGTTTGATTGATGTTTACAAGAAAACCCTCAAGTCTGATGGTATTGCTGGGCTGTATCGAGGATTCAATATCTCTTGTGTTGGAATTATTGTGTATCGTGGGCTCTACTTCGGAATGTACGATTCTCTGAAACCTGTTGTTCTAACTGGTGGCCTGCAGGATAGTTTCTTTGCTAGTTTCTTGCTGGGATGGGGAATTACGATTGGTGCTGGATTAGCTTCTTACCCCATTGACACAGTCCGCAGAAGGATGATGATGACTTCAGGAGAAGCAGTTAAATACAATAGCTCTTTAGATGCATTTAAACAAATCATCAAAAAGGAGGGTTCTAAATCACTGTTTAAGGGTGCTGGAGCAAACATATTGCGTGCTGTTGCAGGCGCTGGTGTGCTTGCTGGCTATGACAAGCTGCAAGTCGTACTTCTTGGCAAGAAGTATGGGTCTGGCGGTGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

380

Amino Acids

40.67

Weight (kDa)

9.87

Isoelectric Point (pI)

25.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28390 AT4G28390
fragaria_vesca	FvH4_6g26500
malus_domestica	MD09G1244400.v1.1 MD17G1236400.v1.1
prunus_persica	Prupe.3G139400_v2.0.a1
pyrus_communis	pycom17g23950
rosa_chinensis	RchiOBHm_Chr2g0127661
rosa_laevigata	RLG00000018944
rosa_multiflora	Rmu_sc0021082.1_g000001 Rmu_ssc0000200.1_g000004
rosa_roxburghii	Rroxscaffold_2G00116690
rosa_rugosa	Rorug02G0271800 Rorug02G0271900 Rorug02G0272000
rosa_samantha	Rh2BG333100
rosa_wichuraiana	Rw2G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	3 cut(s)	282, 922, 1128
AcuI	CTGAAG	1 cut(s)	927
AcyI	GRCGYC	1 cut(s)	642
AfaI	GTAC	3 cut(s)	201, 800, 1101
AfiI	CCNNNNNNNGG	3 cut(s)	25, 196, 368
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	6 cut(s)	155, 487, 499, 511, 517, 748
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	5 cut(s)	227, 287, 899, 969, 1090
AluI	AGCT	5 cut(s)	227, 287, 899, 969, 1090
Alw26I	GTCTC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	1064
AoxI	GGCC	3 cut(s)	137, 468, 832
ApeKI	GCWGC	7 cut(s)	224, 266, 284, 287, 575, 650, 1090
Asp700I	GAANNNNTTC	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	1064
AspS9I	GGNCC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	7 cut(s)	236, 253, 274, 296, 562, 637, 1077
BccI	CCATC	5 cut(s)	2, 27, 524, 713, 864
BciT130I	CCWGG	1 cut(s)	467
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	2 cut(s)	66, 855
BfmI	CTRYAG	1 cut(s)	836
BfoI	RGCGCY	1 cut(s)	1065
BisI	GCNGC	7 cut(s)	225, 267, 285, 288, 576, 651, 1091
BlsI	GCNGC	7 cut(s)	226, 268, 286, 289, 577, 652, 1092
Bme1390I	CCNGG	2 cut(s)	391, 467
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	2 cut(s)	140, 207
BmrFI	CCNGG	2 cut(s)	391, 467
BmsI	GCATC	2 cut(s)	572, 967
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	2 cut(s)	192, 1053
BpuEI	CTTGAG	1 cut(s)	695
BpuMI	CCSGG	1 cut(s)	391
BsaHI	GRCGYC	1 cut(s)	642
BsaJI	CCNNGG	3 cut(s)	97, 465, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	939, 969
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 196, 368
Bse1I	ACTGG	4 cut(s)	112, 209, 542, 832
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	3 cut(s)	97, 465, 645
BseGI	GGATG	6 cut(s)	14, 19, 334, 409, 875, 936
BseLI	CCNNNNNNNGG	3 cut(s)	25, 196, 368
BseNI	ACTGG	4 cut(s)	112, 209, 542, 832
BseXI	GCAGC	7 cut(s)	236, 253, 274, 296, 562, 637, 1077
BseYI	CCCAGC	2 cut(s)	728, 865
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	3 cut(s)	139, 470, 834
BsiSI	CCGG	1 cut(s)	391
BslI	CCNNNNNNNGG	3 cut(s)	25, 196, 368
BsmAI	GTCTC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	139, 470, 834
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp143I	GATC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	3 cut(s)	282, 922, 1128
BspANI	GGCC	3 cut(s)	139, 470, 834
BspLI	GGNNCC	2 cut(s)	140, 207
BspMAI	CTGCAG	1 cut(s)	840
BsrI	ACTGG	4 cut(s)	112, 209, 542, 832
BssECI	CCNNGG	3 cut(s)	97, 465, 645
BssMI	GATC	1 cut(s)	336
BssNI	GRCGYC	1 cut(s)	642
BssT1I	CCWWGG	2 cut(s)	97, 645
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	919, 1020
Bst6I	CTCTTC	1 cut(s)	597
BstACI	GRCGYC	1 cut(s)	642
BstC8I	GCNNGC	5 cut(s)	836, 1050, 1060, 1074, 1078
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	6 cut(s)	14, 19, 334, 409, 875, 936
BstH2I	RGCGCY	1 cut(s)	1065
BstHHI	GCGC	1 cut(s)	1064
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 581, 641, 650, 896
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	389, 465
BstSFI	CTRYAG	1 cut(s)	836
BstV1I	GCAGC	7 cut(s)	236, 253, 274, 296, 562, 637, 1077
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	139, 470, 834
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	6 cut(s)	14, 19, 334, 409, 875, 936
BtsI	GCAGTG	2 cut(s)	159, 435
BtsIMutI	CAGTG	3 cut(s)	159, 435, 1016
Cac8I	GCNNGC	5 cut(s)	836, 1050, 1060, 1074, 1078
CaiI	CAGNNNCTG	1 cut(s)	1064
CfoI	GCGC	1 cut(s)	1064
Cfr13I	GGNCC	1 cut(s)	138
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	3 cut(s)	200, 799, 1100
CspCI	CAANNNNNGTGG	2 cut(s)	643, 678
CviAII	CATG	3 cut(s)	44, 98, 250
CviQI	GTAC	3 cut(s)	200, 799, 1100
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
DraI	TTTAAA	1 cut(s)	985
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco130I	CCWWGG	2 cut(s)	97, 645
Eco147I	AGGCCT	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	786
Eco57I	CTGAAG	1 cut(s)	927
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	2 cut(s)	97, 645
EcoT22I	ATGCAT	1 cut(s)	982
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	2 cut(s)	97, 645
FaeI	CATG	3 cut(s)	47, 101, 253
FalI	AAGNNNNNCTT	4 cut(s)	479, 511, 1086, 1118
FatI	CATG	3 cut(s)	43, 97, 249
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	7 cut(s)	225, 267, 285, 288, 576, 651, 1091
FokI	GGATG	5 cut(s)	6, 341, 416, 882, 943
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	7 cut(s)	225, 267, 285, 288, 576, 651, 1091
FspBI	CTAG	2 cut(s)	66, 855
GlaI	GCGC	1 cut(s)	1063
GluI	GCNGC	7 cut(s)	225, 267, 285, 288, 576, 651, 1091
GsaI	CCCAGC	2 cut(s)	732, 869
GsuI	CTGGAG	2 cut(s)	192, 1053
HaeII	RGCGCY	1 cut(s)	1065
HaeIII	GGCC	3 cut(s)	139, 470, 834
HapII	CCGG	1 cut(s)	391
HgaI	GACGC	1 cut(s)	650
HhaI	GCGC	1 cut(s)	1064
Hin1I	GRCGYC	1 cut(s)	642
Hin1II	CATG	3 cut(s)	47, 101, 253
Hin6I	GCGC	1 cut(s)	1062
HinP1I	GCGC	1 cut(s)	1062
HinfI	GANTC	3 cut(s)	322, 744, 803
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	677
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	5 cut(s)	36, 452, 718, 794, 810
Hpy188III	TCNNGA	5 cut(s)	326, 499, 517, 611, 945
Hpy8I	GTNNAC	1 cut(s)	697
HpyAV	CCTTC	3 cut(s)	152, 514, 921
HpyCH4III	ACNGT	2 cut(s)	919, 1020
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	9 cut(s)	85, 133, 170, 224, 620, 838, 980, 1058, 1093
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 581, 641, 650, 896
HpySE526I	ACGT	1 cut(s)	628
Hsp92I	GRCGYC	1 cut(s)	642
Hsp92II	CATG	3 cut(s)	47, 101, 253
HspAI	GCGC	1 cut(s)	1062
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	3 cut(s)	211, 295, 1034
Lsp1109I	GCAGC	7 cut(s)	236, 253, 274, 296, 562, 637, 1077
LweI	GCATC	2 cut(s)	572, 967
MaeI	CTAG	2 cut(s)	66, 855
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	2 cut(s)	103, 533
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	3 cut(s)	45, 49, 584
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	786
MluCI	AATT	4 cut(s)	294, 396, 765, 876
MmeI	TCCRAC	1 cut(s)	742
Mph1103I	ATGCAT	1 cut(s)	982
MroXI	GAANNNNTTC	1 cut(s)	545
MseI	TTAA	8 cut(s)	306, 399, 473, 678, 957, 984, 1023, 1138
MspA1I	CMGCKG	2 cut(s)	227, 287
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	2 cut(s)	391, 467
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	5 cut(s)	233, 581, 641, 650, 896
NciI	CCSGG	1 cut(s)	391
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	3 cut(s)	47, 101, 253
NlaIV	GGNNCC	2 cut(s)	140, 207
NmuCI	GTSAC	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	982
PceI	AGGCCT	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PdmI	GAANNNNTTC	1 cut(s)	545
PfeI	GAWTC	3 cut(s)	322, 744, 803
PflFI	GACNNNGTC	1 cut(s)	917
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	7 cut(s)	226, 268, 286, 289, 577, 652, 1092
Psp6I	CCWGG	1 cut(s)	465
PspFI	CCCAGC	2 cut(s)	728, 865
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	2 cut(s)	140, 207
PspPI	GGNCC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	840
PstNI	CAGNNNCTG	1 cut(s)	1064
PsyI	GACNNNGTC	1 cut(s)	917
PvuII	CAGCTG	2 cut(s)	227, 287
RsaI	GTAC	3 cut(s)	201, 800, 1101
RsaNI	GTAC	3 cut(s)	200, 799, 1100
SaqAI	TTAA	8 cut(s)	306, 399, 473, 678, 957, 984, 1023, 1138
SatI	GCNGC	7 cut(s)	225, 267, 285, 288, 576, 651, 1091
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	138
SbfI	CCTGCAGG	1 cut(s)	840
ScrFI	CCNGG	2 cut(s)	391, 467
SdaI	CCTGCAGG	1 cut(s)	840
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	2 cut(s)	572, 967
SfcI	CTRYAG	1 cut(s)	836
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse8387I	CCTGCAGG	1 cut(s)	840
Sse9I	AATT	4 cut(s)	294, 396, 765, 876
SseBI	AGGCCT	1 cut(s)	470
SsiI	CCGC	3 cut(s)	282, 922, 1128
SspMI	CTAG	2 cut(s)	66, 855
StuI	AGGCCT	1 cut(s)	470
StyD4I	CCNGG	2 cut(s)	389, 465
StyI	CCWWGG	2 cut(s)	97, 645
TaaI	ACNGT	2 cut(s)	919, 1020
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	1 cut(s)	739
TasI	AATT	4 cut(s)	294, 396, 765, 876
TfiI	GAWTC	3 cut(s)	322, 744, 803
Tru1I	TTAA	8 cut(s)	306, 399, 473, 678, 957, 984, 1023, 1138
Tru9I	TTAA	8 cut(s)	306, 399, 473, 678, 957, 984, 1023, 1138
TscAI	CASTG	3 cut(s)	166, 442, 1023
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	7 cut(s)	224, 266, 284, 287, 575, 650, 1090
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	576
TspRI	CASTG	3 cut(s)	166, 442, 1023
Tth111I	GACNNNGTC	1 cut(s)	917
Van91I	CCANNNNNTGG	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	545
XspI	CTAG	2 cut(s)	66, 855
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.