Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000200.1

Orthogroup ID

OG0013827

Physical Location & Seq

Genomic Coordinates Forward (+)

20308 .. 23223

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000200.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ctggtgactgggaaaaatctcccttcttcactctctccaccatcatctttcactgttcatctctccctcggcgaccttctcagctcagtggcttcagttataatcatggctgatgggtcgtcccatccatctatatttcagaaaatacatgggcagtcctgcctcatttctaagctttctcccaacttgaagagcggaaactatggtttaactggtgcttatgcaaatggaggcttgcaaggccccttgctgccggcatgccaaagcactgcccttgcacagctctcactggtgtctcccattttggcacaggctccggcagagaaaggggcagctggttttgctattgatttccttatgggaggtgtatctgctgctgtttctaaaacagctgctgctccaattgagcgtgttaaactactaatccagaatcaggatgagatgatcaaggctggtcggctttctcaaccatacaagggaataactgactgctttgcccgaacaattaaggatgagggtctcatttctctgtggagaggaaatactgctaatgttatcagatactttcctacccaggccttgaactttgctttcaaggattacttcaagaggcttttcaacttcaagaaggacagagatggctactggaagtggtttgctgggaacctggcatcaggtggtgctgatggtgcttcatctcttctgtttgtttattccttggactttgctagaacacgtttggcaaatgatggtaaggctgccaaaaagggtggggagagacagtttaatggtttgattgatgtttacaagaaaaccctaaagtctgatggtattgctgggctgtatcgcggatttaatatctcatgtgttggaattattgtgtatcgtgggctctattttggaatgtatgattctctgaaacctgtggttctggtgggtaagctggaggataatttctttgctagttttttgctgggatggggaattacaattggagctggattggcttcatacccaattgacacagtgcgcagaagaatgatgatgacctcaggagaagcagtaaaatataaaaactctttggatgcctttaagcaaatcatcaaaaatgagggcgctaaatctctattcaaaggtgctggagcaaacatattacgtgctgttgcgggtgctggtgtgcttgctggctatgacaagctgcaagtcattgtttttggcaagaagtatggatctggtggtggtggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

415

Amino Acids

44.2

Weight (kDa)

9.72

Isoelectric Point (pI)

25.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28390 AT4G28390
fragaria_vesca	FvH4_6g26500
malus_domestica	MD09G1244400.v1.1 MD17G1236400.v1.1
prunus_persica	Prupe.3G139400_v2.0.a1
pyrus_communis	pycom17g23950
rosa_chinensis	RchiOBHm_Chr2g0127661
rosa_laevigata	RLG00000018944
rosa_multiflora	Rmu_sc0021082.1_g000001 Rmu_ssc0000200.1_g000004
rosa_roxburghii	Rroxscaffold_2G00116690
rosa_rugosa	Rorug02G0271800 Rorug02G0271900 Rorug02G0272000
rosa_samantha	Rh2BG333100
rosa_wichuraiana	Rw2G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
Acc16I	TGCGCA	1 cut(s)	1031
AccBSI	CCGCTC	1 cut(s)	195
AccII	CGCG	1 cut(s)	849
AciI	CCGC	3 cut(s)	195, 849, 1166
AclWI	GGATC	1 cut(s)	1237
AcuI	CTGAAG	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	433, 476
AflIII	ACRYGT	1 cut(s)	734
AgsI	TTSAA	7 cut(s)	190, 583, 595, 607, 619, 625, 1132
AjnI	CCWGG	2 cut(s)	573, 666
AluBI	AGCT	8 cut(s)	84, 175, 283, 335, 392, 943, 998, 1198
AluI	AGCT	8 cut(s)	84, 175, 283, 335, 392, 943, 998, 1198
Alw26I	GTCTC	3 cut(s)	300, 524, 772
AlwI	GGATC	1 cut(s)	1237
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	241, 576
ApeKI	GCWGC	7 cut(s)	250, 332, 374, 392, 395, 758, 1198
AspLEI	GCGC	2 cut(s)	1032, 1118
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	1051
BanII	GRGCYC	1 cut(s)	894
BbvI	GCAGC	7 cut(s)	237, 344, 361, 379, 382, 745, 1185
BccI	CCATC	9 cut(s)	49, 107, 132, 136, 632, 680, 743, 821, 972
BciT130I	CCWGG	2 cut(s)	575, 668
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	3 cut(s)	300, 524, 772
BfaI	CTAG	2 cut(s)	729, 963
BfoI	RGCGCY	1 cut(s)	1119
BisI	GCNGC	7 cut(s)	251, 333, 375, 393, 396, 759, 1199
BlsI	GCNGC	7 cut(s)	252, 334, 376, 394, 397, 760, 1200
Bme1390I	CCNGG	2 cut(s)	575, 668
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	3 cut(s)	244, 315, 665
BmrFI	CCNGG	2 cut(s)	575, 668
BmrI	ACTGGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	680, 1075
BmuI	ACTGGG	1 cut(s)	18
BpmI	CTGGAG	2 cut(s)	965, 1161
BsaAI	YACGTR	1 cut(s)	1157
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	3 cut(s)	67, 573, 717
BsaXI	ACNNNNNCTCC	4 cut(s)	767, 797, 1047, 1077
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 476
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	4 cut(s)	13, 217, 294, 650
Bse21I	CCTNAGG	1 cut(s)	1051
BseBI	CCWGG	2 cut(s)	575, 668
BseDI	CCNNGG	3 cut(s)	67, 573, 717
BseGI	GGATG	5 cut(s)	124, 442, 517, 983, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	433, 476
BseMII	CTCAG	3 cut(s)	94, 99, 1065
BseNI	ACTGG	4 cut(s)	13, 217, 294, 650
BseXI	GCAGC	7 cut(s)	237, 344, 361, 379, 382, 745, 1185
BseYI	CCCAGC	3 cut(s)	659, 836, 973
Bsh1236I	CGCG	1 cut(s)	849
BshFI	GGCC	2 cut(s)	243, 578
BsiSI	CCGG	2 cut(s)	254, 317
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	433, 476
BsmAI	GTCTC	3 cut(s)	300, 524, 772
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	243, 578
Bso31I	GGTCTC	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp143I	GATC	2 cut(s)	444, 1229
BspACI	CCGC	3 cut(s)	195, 849, 1166
BspANI	GGCC	2 cut(s)	243, 578
BspCNI	CTCAG	3 cut(s)	93, 98, 1064
BspFNI	CGCG	1 cut(s)	849
BspLI	GGNNCC	3 cut(s)	244, 315, 665
BspPI	GGATC	1 cut(s)	1237
BspQI	GCTCTTC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	524
BsrBI	CCGCTC	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	4 cut(s)	13, 217, 294, 650
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	3 cut(s)	67, 573, 717
BssMI	GATC	2 cut(s)	444, 1229
BssT1I	CCWWGG	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	575, 668
Bst4CI	ACNGT	3 cut(s)	55, 783, 1027
Bst6I	CTCTTC	2 cut(s)	185, 705
BstBAI	YACGTR	1 cut(s)	1157
BstC8I	GCNNGC	5 cut(s)	236, 255, 259, 1182, 1186
BstDEI	CTNAG	4 cut(s)	80, 85, 171, 1051
BstF5I	GGATG	5 cut(s)	124, 442, 517, 983, 1090
BstFNI	CGCG	1 cut(s)	849
BstH2I	RGCGCY	1 cut(s)	1119
BstHHI	GCGC	2 cut(s)	1032, 1118
BstKTI	GATC	2 cut(s)	447, 1232
BstMAI	GTCTC	3 cut(s)	300, 524, 772
BstMBI	GATC	2 cut(s)	444, 1229
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 341, 689, 1004
BstNI	CCWGG	2 cut(s)	575, 668
BstNSI	RCATGY	1 cut(s)	261
BstSCI	CCNGG	2 cut(s)	573, 666
BstUI	CGCG	1 cut(s)	849
BstV1I	GCAGC	7 cut(s)	237, 344, 361, 379, 382, 745, 1185
BstX2I	RGATCY	1 cut(s)	1229
BstYI	RGATCY	1 cut(s)	1229
Bsu36I	CCTNAGG	1 cut(s)	1051
BsuRI	GGCC	2 cut(s)	243, 578
BtsCI	GGATG	5 cut(s)	124, 442, 517, 983, 1090
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	5 cut(s)	51, 93, 267, 287, 1032
Cac8I	GCNNGC	5 cut(s)	236, 255, 259, 1182, 1186
CaiI	CAGNNNCTG	1 cut(s)	395
CfoI	GCGC	2 cut(s)	1032, 1118
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	242
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviAII	CATG	4 cut(s)	106, 149, 258, 864
DdeI	CTNAG	4 cut(s)	80, 85, 171, 1051
DpnI	GATC	2 cut(s)	446, 1231
DpnII	GATC	2 cut(s)	444, 1229
Eam1104I	CTCTTC	2 cut(s)	185, 705
EarI	CTCTTC	2 cut(s)	185, 705
Eco130I	CCWWGG	1 cut(s)	717
Eco147I	AGGCCT	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	894
Eco31I	GGTCTC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	1051
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	573, 666
EcoT14I	CCWWGG	1 cut(s)	717
EcoT38I	GRGCYC	1 cut(s)	894
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	4 cut(s)	109, 152, 261, 867
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	4 cut(s)	105, 148, 257, 863
FauI	CCCGC	1 cut(s)	1159
FbaI	TGATCA	1 cut(s)	444
Fnu4HI	GCNGC	7 cut(s)	251, 333, 375, 393, 396, 759, 1199
FokI	GGATG	5 cut(s)	111, 449, 524, 990, 1097
FriOI	GRGCYC	1 cut(s)	894
Fsp4HI	GCNGC	7 cut(s)	251, 333, 375, 393, 396, 759, 1199
FspBI	CTAG	2 cut(s)	729, 963
FspI	TGCGCA	1 cut(s)	1031
GlaI	GCGC	2 cut(s)	1031, 1117
GluI	GCNGC	7 cut(s)	251, 333, 375, 393, 396, 759, 1199
GsaI	CCCAGC	3 cut(s)	663, 840, 977
GsuI	CTGGAG	2 cut(s)	965, 1161
HaeII	RGCGCY	1 cut(s)	1119
HaeIII	GGCC	2 cut(s)	243, 578
HapII	CCGG	2 cut(s)	254, 317
HhaI	GCGC	2 cut(s)	1032, 1118
Hin1II	CATG	4 cut(s)	109, 152, 261, 867
Hin6I	GCGC	2 cut(s)	1030, 1116
HinP1I	GCGC	2 cut(s)	1030, 1116
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	430, 911
HpaII	CCGG	2 cut(s)	254, 317
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	4 cut(s)	141, 560, 826, 918
Hpy188III	TCNNGA	5 cut(s)	427, 434, 607, 625, 1053
Hpy8I	GTNNAC	1 cut(s)	805
HpyAV	CCTTC	3 cut(s)	33, 86, 622
HpyCH4III	ACNGT	3 cut(s)	55, 783, 1027
HpyCH4IV	ACGT	2 cut(s)	736, 1156
HpyCH4V	TGCA	4 cut(s)	224, 238, 278, 1201
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 341, 689, 1004
HpyF3I	CTNAG	4 cut(s)	80, 85, 171, 1051
HpySE526I	ACGT	2 cut(s)	736, 1156
Hsp92II	CATG	4 cut(s)	109, 152, 261, 867
HspAI	GCGC	2 cut(s)	1030, 1116
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	444, 1229
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	4 cut(s)	319, 403, 995, 1142
Lsp1109I	GCAGC	7 cut(s)	237, 344, 361, 379, 382, 745, 1185
LweI	GCATC	2 cut(s)	680, 1075
MaeI	CTAG	2 cut(s)	729, 963
MaeII	ACGT	2 cut(s)	736, 1156
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	446, 1231
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	2 cut(s)	444, 1229
MboII	GAAGA	4 cut(s)	18, 202, 692, 1047
MfeI	CAATTG	3 cut(s)	402, 990, 1017
MflI	RGATCY	1 cut(s)	1229
MhlI	GDGCHC	1 cut(s)	894
MluCI	AATT	7 cut(s)	402, 504, 873, 952, 984, 990, 1017
MmeI	TCCRAC	1 cut(s)	850
MroNI	GCCGGC	1 cut(s)	253
MseI	TTAA	7 cut(s)	209, 414, 507, 786, 855, 1092, 1246
MspA1I	CMGCKG	2 cut(s)	335, 392
MspI	CCGG	2 cut(s)	254, 317
MspR9I	CCNGG	2 cut(s)	575, 668
MunI	CAATTG	3 cut(s)	402, 990, 1017
MvaI	CCWGG	2 cut(s)	575, 668
MvnI	CGCG	1 cut(s)	849
MwoI	GCNNNNNNNGC	4 cut(s)	240, 341, 689, 1004
NaeI	GCCGGC	1 cut(s)	255
NdeII	GATC	2 cut(s)	444, 1229
NgoMIV	GCCGGC	1 cut(s)	253
NlaIII	CATG	4 cut(s)	109, 152, 261, 867
NlaIV	GGNNCC	3 cut(s)	244, 315, 665
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	4
NsbI	TGCGCA	1 cut(s)	1031
NspI	RCATGY	1 cut(s)	261
PaeI	GCATGC	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	578
PciSI	GCTCTTC	1 cut(s)	185
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	430, 911
PkrI	GCNGC	7 cut(s)	252, 334, 376, 394, 397, 760, 1200
Ppu21I	YACGTR	1 cut(s)	1157
PsiI	TTATAA	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	573, 666
PspFI	CCCAGC	3 cut(s)	659, 836, 973
PspGI	CCWGG	2 cut(s)	573, 666
PspN4I	GGNNCC	3 cut(s)	244, 315, 665
PspPI	GGNCC	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	1229
PvuII	CAGCTG	2 cut(s)	335, 392
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	7 cut(s)	209, 414, 507, 786, 855, 1092, 1246
SatI	GCNGC	7 cut(s)	251, 333, 375, 393, 396, 759, 1199
Sau3AI	GATC	2 cut(s)	444, 1229
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	575, 668
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	2 cut(s)	680, 1075
SphI	GCATGC	1 cut(s)	261
Sse9I	AATT	7 cut(s)	402, 504, 873, 952, 984, 990, 1017
SseBI	AGGCCT	1 cut(s)	578
SsiI	CCGC	3 cut(s)	195, 849, 1166
SspMI	CTAG	2 cut(s)	729, 963
StuI	AGGCCT	1 cut(s)	578
StyD4I	CCNGG	2 cut(s)	573, 666
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	3 cut(s)	55, 783, 1027
TaiI	ACGT	2 cut(s)	739, 1159
TasI	AATT	7 cut(s)	402, 504, 873, 952, 984, 990, 1017
TfiI	GAWTC	2 cut(s)	430, 911
Tru1I	TTAA	7 cut(s)	209, 414, 507, 786, 855, 1092, 1246
Tru9I	TTAA	7 cut(s)	209, 414, 507, 786, 855, 1092, 1246
TscAI	CASTG	5 cut(s)	58, 93, 274, 294, 1032
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	7 cut(s)	250, 332, 374, 392, 395, 758, 1198
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	47, 684, 999
TspRI	CASTG	5 cut(s)	58, 93, 274, 294, 1032
XceI	RCATGY	1 cut(s)	261
XspI	CTAG	2 cut(s)	729, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.