Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0013827

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG333100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGGGAGATCAATCTTTTTGGTTTCTCAACGGATTTTGAAGGACCTATTTTGTGGCTGCGGTTCGGTTCATATAAATCCTTTCCTTCATTTCCTGGTGACTGGGAAAAATCTCCCTTCTTCACTCTCTCCATCATCTTCTTTCACTGTTCATCTCTCCCTCGGCGACCTTCTCAGCTCAGTGGCTTCAGTTATAATCATGGCTGATGGGTCGTCCCATCCATCTATATTTCAGAAAATACATGGGCAGTCCTGCCTCATTTCTAAGCTTTCTCCCAACTTGAAGAGCAGAAACTATGGTTTAACTGGTGCTTATGCAAATGGAGGCTTGCAAGGCCCCTTGCTGCCAGCAGGCCAAAGCACTGCCCTTGCACAGCTCTCACTGGTGTCTCCCATTTTGGCACAGGCTCCGGCAGAGAAAGGGGCAGCTGGTTTTGCTATTGATTTCCTTATGGGAGGTGTATCTGCTGCTGTCTCTAAAACAGCTGCTGCTCCAATTGAGCGTGTTAAACTACTAATCCAGAATCAGGATGAGATGATCAAGGCTGGTCGGCTTTCTCAACCATACAAGGGAATAACTGACTGCTTTGCCCGAACAATTAAGGATGAGGGTCTCATTTCTCTGTGGAGAGGAAATACTGCTAATGTTATCAGATACTTTCCTACCCAGGCCTTGAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAGGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAACCTGGCATCAGGTGGTGCTGCTGGTGCTTCATCTCTTCTGTTTGTTTATTCCTTGGACTTTGCTAGAACACGTTTGGCAAATGATGGTAAGGCTGCCAAAAAGGGTGGGGAGAGACAGTTTAATGGTTTGATTGATGTTTACAAGAAAACCCTAAAGTCTGATGGTATTGCTGGGCTGTATCGCGGATTTAATATCTCATGTGTTGGAATTATTGTGTATCGTGGGCTCTATTTTGGAATGTATGATTCTCTGAAACCTGTGGTTCTGGTGGGTAAGCTGGAGGATAATTTCTTTGCTAGTTTTTTGCTGGGATGGGGAATTACAATTGGAGCTGGATTGGCTTCATACCCAATTGACACAGTGCGCAGAAGAATGATGATGACCTCAGGAGAAGCAGTAAAATATAAAAACTCTTTGGATGCCTTTAAGCAAATCATCAAAAATGAGGGTGCTAAATCTCTATTCAAAGGTGCTGGAGCAAACATATTACGTGCTGTTGCGGGTGCTGGTGTGCTTGCTGGCTATGACAAGCTGCAAGTCATTGTTTTTGGCAAGAAGTATGGATCTGGTGGTGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

446

Amino Acids

47.72

Weight (kDa)

9.82

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	144 - 240	1.4e-25	Mitochondrial carrier protein
Mito_carr	PF00153	248 - 340	5.2e-21	Mitochondrial carrier protein
Mito_carr	PF00153	348 - 436	2.6e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28390 AT4G28390
fragaria_vesca	FvH4_6g26500
malus_domestica	MD09G1244400.v1.1 MD17G1236400.v1.1
prunus_persica	Prupe.3G139400_v2.0.a1
pyrus_communis	pycom17g23950
rosa_chinensis	RchiOBHm_Chr2g0127661
rosa_laevigata	RLG00000018944
rosa_multiflora	Rmu_sc0021082.1_g000001 Rmu_ssc0000200.1_g000004
rosa_roxburghii	Rroxscaffold_2G00116690
rosa_rugosa	Rorug02G0271800 Rorug02G0271900 Rorug02G0272000
rosa_samantha	Rh2BG333100
rosa_wichuraiana	Rw2G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
Acc16I	TGCGCA	1 cut(s)	1124
AccII	CGCG	1 cut(s)	942
AciI	CCGC	3 cut(s)	60, 942, 1259
AclWI	GGATC	1 cut(s)	1330
AcuI	CTGAAG	1 cut(s)	171
AfiI	CCNNNNNNNGG	2 cut(s)	526, 569
AflIII	ACRYGT	1 cut(s)	827
AgsI	TTSAA	8 cut(s)	40, 283, 676, 688, 700, 712, 718, 1225
AjnI	CCWGG	3 cut(s)	93, 666, 759
AluBI	AGCT	8 cut(s)	177, 268, 376, 428, 485, 1036, 1091, 1291
AluI	AGCT	8 cut(s)	177, 268, 376, 428, 485, 1036, 1091, 1291
Alw26I	GTCTC	4 cut(s)	393, 478, 617, 865
AlwI	GGATC	1 cut(s)	1330
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	3 cut(s)	334, 352, 669
ApeKI	GCWGC	9 cut(s)	57, 343, 425, 467, 485, 488, 776, 851, 1291
AspLEI	GCGC	1 cut(s)	1125
AspS9I	GGNCC	2 cut(s)	43, 335
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	43
AxyI	CCTNAGG	1 cut(s)	1144
BanII	GRGCYC	1 cut(s)	987
BbvI	GCAGC	9 cut(s)	44, 330, 437, 454, 472, 475, 763, 838, 1278
BccI	CCATC	8 cut(s)	139, 200, 225, 229, 725, 836, 914, 1065
BciT130I	CCWGG	3 cut(s)	95, 668, 761
BclI	TGATCA	1 cut(s)	537
BcoDI	GTCTC	4 cut(s)	393, 478, 617, 865
BfaI	CTAG	2 cut(s)	822, 1056
BisI	GCNGC	9 cut(s)	58, 344, 426, 468, 486, 489, 777, 852, 1292
BlsI	GCNGC	9 cut(s)	59, 345, 427, 469, 487, 490, 778, 853, 1293
Bme1390I	CCNGG	3 cut(s)	95, 668, 761
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	43, 335
BmiI	GGNNCC	3 cut(s)	337, 408, 758
BmrFI	CCNGG	3 cut(s)	95, 668, 761
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	773, 1168
BmuI	ACTGGG	1 cut(s)	111
BpmI	CTGGAG	2 cut(s)	1058, 1254
BsaAI	YACGTR	1 cut(s)	1250
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	3 cut(s)	160, 666, 810
BsaXI	ACNNNNNCTCC	4 cut(s)	860, 890, 1140, 1170
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 569
Bse1I	ACTGG	4 cut(s)	106, 310, 387, 743
Bse21I	CCTNAGG	1 cut(s)	1144
BseBI	CCWGG	3 cut(s)	95, 668, 761
BseDI	CCNNGG	3 cut(s)	160, 666, 810
BseGI	GGATG	5 cut(s)	217, 535, 610, 1076, 1183
BseLI	CCNNNNNNNGG	2 cut(s)	526, 569
BseMII	CTCAG	3 cut(s)	187, 192, 1158
BseNI	ACTGG	4 cut(s)	106, 310, 387, 743
BseXI	GCAGC	9 cut(s)	44, 330, 437, 454, 472, 475, 763, 838, 1278
BseYI	CCCAGC	3 cut(s)	752, 929, 1066
Bsh1236I	CGCG	1 cut(s)	942
BshFI	GGCC	3 cut(s)	336, 354, 671
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	526, 569
BsmAI	GTCTC	4 cut(s)	393, 478, 617, 865
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	336, 354, 671
Bso31I	GGTCTC	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	987
Bsp143I	GATC	3 cut(s)	8, 537, 1322
BspACI	CCGC	3 cut(s)	60, 942, 1259
BspANI	GGCC	3 cut(s)	336, 354, 671
BspCNI	CTCAG	3 cut(s)	186, 191, 1157
BspFNI	CGCG	1 cut(s)	942
BspLI	GGNNCC	3 cut(s)	337, 408, 758
BspPI	GGATC	1 cut(s)	1330
BspQI	GCTCTTC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	617
BsrI	ACTGG	4 cut(s)	106, 310, 387, 743
BssECI	CCNNGG	3 cut(s)	160, 666, 810
BssMI	GATC	3 cut(s)	8, 537, 1322
BssT1I	CCWWGG	1 cut(s)	810
Bst2UI	CCWGG	3 cut(s)	95, 668, 761
Bst4CI	ACNGT	3 cut(s)	148, 876, 1120
Bst6I	CTCTTC	2 cut(s)	278, 798
BstBAI	YACGTR	1 cut(s)	1250
BstC8I	GCNNGC	5 cut(s)	329, 348, 352, 1275, 1279
BstDEI	CTNAG	4 cut(s)	173, 178, 264, 1144
BstF5I	GGATG	5 cut(s)	217, 535, 610, 1076, 1183
BstFNI	CGCG	1 cut(s)	942
BstHHI	GCGC	1 cut(s)	1125
BstKTI	GATC	3 cut(s)	11, 540, 1325
BstMAI	GTCTC	4 cut(s)	393, 478, 617, 865
BstMBI	GATC	3 cut(s)	8, 537, 1322
BstMWI	GCNNNNNNNGC	4 cut(s)	333, 434, 782, 1097
BstNI	CCWGG	3 cut(s)	95, 668, 761
BstSCI	CCNGG	3 cut(s)	93, 666, 759
BstUI	CGCG	1 cut(s)	942
BstV1I	GCAGC	9 cut(s)	44, 330, 437, 454, 472, 475, 763, 838, 1278
BstX2I	RGATCY	1 cut(s)	1322
BstYI	RGATCY	1 cut(s)	1322
Bsu36I	CCTNAGG	1 cut(s)	1144
BsuRI	GGCC	3 cut(s)	336, 354, 671
BtsCI	GGATG	5 cut(s)	217, 535, 610, 1076, 1183
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	5 cut(s)	144, 186, 360, 380, 1125
Cac8I	GCNNGC	5 cut(s)	329, 348, 352, 1275, 1279
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	1 cut(s)	1125
Cfr13I	GGNCC	2 cut(s)	43, 335
CspCI	CAANNNNNGTGG	2 cut(s)	844, 879
CviAII	CATG	3 cut(s)	199, 242, 957
DdeI	CTNAG	4 cut(s)	173, 178, 264, 1144
DpnI	GATC	3 cut(s)	10, 539, 1324
DpnII	GATC	3 cut(s)	8, 537, 1322
Eam1104I	CTCTTC	2 cut(s)	278, 798
EarI	CTCTTC	2 cut(s)	278, 798
Eco130I	CCWWGG	1 cut(s)	810
Eco147I	AGGCCT	1 cut(s)	671
Eco24I	GRGCYC	1 cut(s)	987
Eco31I	GGTCTC	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	1144
EcoO109I	RGGNCCY	2 cut(s)	43, 335
EcoRII	CCWGG	3 cut(s)	93, 666, 759
EcoT14I	CCWWGG	1 cut(s)	810
EcoT38I	GRGCYC	1 cut(s)	987
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	3 cut(s)	202, 245, 960
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	3 cut(s)	198, 241, 956
FauI	CCCGC	1 cut(s)	1252
FbaI	TGATCA	1 cut(s)	537
Fnu4HI	GCNGC	9 cut(s)	58, 344, 426, 468, 486, 489, 777, 852, 1292
FokI	GGATG	5 cut(s)	204, 542, 617, 1083, 1190
FriOI	GRGCYC	1 cut(s)	987
Fsp4HI	GCNGC	9 cut(s)	58, 344, 426, 468, 486, 489, 777, 852, 1292
FspBI	CTAG	2 cut(s)	822, 1056
FspI	TGCGCA	1 cut(s)	1124
GlaI	GCGC	1 cut(s)	1124
GluI	GCNGC	9 cut(s)	58, 344, 426, 468, 486, 489, 777, 852, 1292
GsaI	CCCAGC	3 cut(s)	756, 933, 1070
GsuI	CTGGAG	2 cut(s)	1058, 1254
HaeIII	GGCC	3 cut(s)	336, 354, 671
HapII	CCGG	1 cut(s)	410
HhaI	GCGC	1 cut(s)	1125
Hin1II	CATG	3 cut(s)	202, 245, 960
Hin6I	GCGC	1 cut(s)	1123
HinP1I	GCGC	1 cut(s)	1123
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	523, 1004
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	898
Hpy188I	TCNGA	4 cut(s)	234, 653, 919, 1011
Hpy188III	TCNNGA	5 cut(s)	520, 527, 700, 718, 1146
Hpy8I	GTNNAC	1 cut(s)	898
HpyAV	CCTTC	5 cut(s)	34, 95, 126, 179, 715
HpyCH4III	ACNGT	3 cut(s)	148, 876, 1120
HpyCH4IV	ACGT	2 cut(s)	829, 1249
HpyCH4V	TGCA	4 cut(s)	317, 331, 371, 1294
HpyF10VI	GCNNNNNNNGC	4 cut(s)	333, 434, 782, 1097
HpyF3I	CTNAG	4 cut(s)	173, 178, 264, 1144
HpySE526I	ACGT	2 cut(s)	829, 1249
Hsp92II	CATG	3 cut(s)	202, 245, 960
HspAI	GCGC	1 cut(s)	1123
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	3 cut(s)	8, 537, 1322
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	4 cut(s)	412, 496, 1088, 1235
Lsp1109I	GCAGC	9 cut(s)	44, 330, 437, 454, 472, 475, 763, 838, 1278
LweI	GCATC	2 cut(s)	773, 1168
MaeI	CTAG	2 cut(s)	822, 1056
MaeII	ACGT	2 cut(s)	829, 1249
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	3 cut(s)	10, 539, 1324
MboI	GATC	3 cut(s)	8, 537, 1322
MboII	GAAGA	5 cut(s)	111, 129, 295, 785, 1140
MfeI	CAATTG	3 cut(s)	495, 1083, 1110
MflI	RGATCY	1 cut(s)	1322
MhlI	GDGCHC	1 cut(s)	987
MluCI	AATT	7 cut(s)	495, 597, 966, 1045, 1077, 1083, 1110
MmeI	TCCRAC	1 cut(s)	943
MseI	TTAA	7 cut(s)	302, 507, 600, 879, 948, 1185, 1339
MspA1I	CMGCKG	2 cut(s)	428, 485
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	3 cut(s)	95, 668, 761
MunI	CAATTG	3 cut(s)	495, 1083, 1110
MvaI	CCWGG	3 cut(s)	95, 668, 761
MvnI	CGCG	1 cut(s)	942
MwoI	GCNNNNNNNGC	4 cut(s)	333, 434, 782, 1097
NdeII	GATC	3 cut(s)	8, 537, 1322
NlaIII	CATG	3 cut(s)	202, 245, 960
NlaIV	GGNNCC	3 cut(s)	337, 408, 758
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	97
NsbI	TGCGCA	1 cut(s)	1124
PceI	AGGCCT	1 cut(s)	671
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	523, 1004
PkrI	GCNGC	9 cut(s)	59, 345, 427, 469, 487, 490, 778, 853, 1293
Ppu21I	YACGTR	1 cut(s)	1250
PpuMI	RGGWCCY	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	3 cut(s)	93, 666, 759
PspFI	CCCAGC	3 cut(s)	752, 929, 1066
PspGI	CCWGG	3 cut(s)	93, 666, 759
PspN4I	GGNNCC	3 cut(s)	337, 408, 758
PspPI	GGNCC	2 cut(s)	43, 335
PspPPI	RGGWCCY	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	1322
PvuII	CAGCTG	2 cut(s)	428, 485
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	7 cut(s)	302, 507, 600, 879, 948, 1185, 1339
SatI	GCNGC	9 cut(s)	58, 344, 426, 468, 486, 489, 777, 852, 1292
Sau3AI	GATC	3 cut(s)	8, 537, 1322
Sau96I	GGNCC	2 cut(s)	43, 335
ScrFI	CCNGG	3 cut(s)	95, 668, 761
SduI	GDGCHC	1 cut(s)	987
SfaNI	GCATC	2 cut(s)	773, 1168
SinI	GGWCC	1 cut(s)	43
Sse9I	AATT	7 cut(s)	495, 597, 966, 1045, 1077, 1083, 1110
SseBI	AGGCCT	1 cut(s)	671
SsiI	CCGC	3 cut(s)	60, 942, 1259
SspMI	CTAG	2 cut(s)	822, 1056
StuI	AGGCCT	1 cut(s)	671
StyD4I	CCNGG	3 cut(s)	93, 666, 759
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	3 cut(s)	148, 876, 1120
TaiI	ACGT	2 cut(s)	832, 1252
TasI	AATT	7 cut(s)	495, 597, 966, 1045, 1077, 1083, 1110
TfiI	GAWTC	2 cut(s)	523, 1004
Tru1I	TTAA	7 cut(s)	302, 507, 600, 879, 948, 1185, 1339
Tru9I	TTAA	7 cut(s)	302, 507, 600, 879, 948, 1185, 1339
TscAI	CASTG	5 cut(s)	151, 186, 367, 387, 1125
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	9 cut(s)	57, 343, 425, 467, 485, 488, 776, 851, 1291
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	5 cut(s)	59, 77, 140, 777, 1092
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	5 cut(s)	151, 186, 367, 387, 1125
VpaK11BI	GGWCC	1 cut(s)	43
XspI	CTAG	2 cut(s)	822, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.