Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013827

Physical Location & Seq

Genomic Coordinates Reverse (-)

42526816 .. 42530139

Gene Structure 3324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49951

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCTGATGGGTCGTCCCATCCATCTATATTTCAGAAAATACATGGGCAGTCCTGCCTCATTTCTAAGCTTTCTCCCAACTTGAAGAGCAGAAACTATGGTTTAACTGGTGCTTATGCAAATGGAGGCTTGCAAGGCCCCTTGCTGCCAGCAGGCCAAAGCACTGCCCTTGCACAGCTCTCACTGGTGTCTCCCATTTTGGCACAGGCTCCGGCAGAGAAAGGGGCAGCTGGTTTTGCTATTGATTTCCTTATGGGAGGTGTATCTGCTGCTGTCTCTAAAACAGCTGCTGCTCCAATTGAGCGTGTTAAACTACTAATCCAGAATCAGGATGAGATGATCAAGGCTGGTCGGCTTTCTCAACCATACAAGGGAATAACTGACTGCTTTGCCCGAACAATTAAGGATGAGGGTCTCATTTCTCTGTGGAGAGGAAATACTGCTAATGTTATCAGATACTTTCCTACCCAGGCCTTGAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAGGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAACCTGGCATCAGGTGGTGCTGCTGGTGCTTCATCTCTTCTGTTTGTTTATTCCTTGGACTTTGCTAGAACACGTTTGGCAAATGATGGTAAGGCTGCCAAAAAGGGTGGGGAGAGACAGTTTAATGGTTTGATTGATGTTTACAAGAAAACCCTAAAGTCTGATGGTATTGCTGGGCTGTATCGCGGATTTAATATCTCATGTGTTGGAATTATTGTGTATCGTGGGCTCTATTTTGGAATGTATGATTCTCTGAAACCTGTGGTTCTGGTGGGTAAGCTGGAGGATAATTTCTTTGCTAGTTTTTTGCTGGGATGGGGAATTACAATTGGAGCTGGATTGGCTTCATACCCAATTGACACAGTGCGCAGAAGAATGATGATGACCTCAGGAGAAGCAGTAAAATATAAAAACTCTTTGGATGCCTTTAAGCAAATCATCAAAAATGAGGGTGCTAAATCTCTATTCAAAGGTGCTGGAGCAAACATATTACGTGCTGTTGCGGGTGCTGGTGTGCTTGCTGGCTATGACAAGCTGCAAGTCATTGTTTTTGGCAAGAAGTATGGATCTGGTGGTGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

380

Amino Acids

40.69

Weight (kDa)

9.84

Isoelectric Point (pI)

23.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	78 - 174	1e-25	Mitochondrial carrier protein
Mito_carr	PF00153	182 - 274	4e-21	Mitochondrial carrier protein
Mito_carr	PF00153	282 - 370	2e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28390 AT4G28390
fragaria_vesca	FvH4_6g26500
malus_domestica	MD09G1244400.v1.1 MD17G1236400.v1.1
prunus_persica	Prupe.3G139400_v2.0.a1
pyrus_communis	pycom17g23950
rosa_chinensis	RchiOBHm_Chr2g0127661
rosa_laevigata	RLG00000018944
rosa_multiflora	Rmu_sc0021082.1_g000001 Rmu_ssc0000200.1_g000004
rosa_roxburghii	Rroxscaffold_2G00116690
rosa_rugosa	Rorug02G0271800 Rorug02G0271900 Rorug02G0272000
rosa_samantha	Rh2BG333100
rosa_wichuraiana	Rw2G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	926
AccII	CGCG	1 cut(s)	744
AciI	CCGC	2 cut(s)	744, 1061
AclWI	GGATC	1 cut(s)	1132
AfiI	CCNNNNNNNGG	2 cut(s)	328, 371
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	7 cut(s)	85, 478, 490, 502, 514, 520, 1027
AjnI	CCWGG	2 cut(s)	468, 561
AluBI	AGCT	7 cut(s)	70, 178, 230, 287, 838, 893, 1093
AluI	AGCT	7 cut(s)	70, 178, 230, 287, 838, 893, 1093
Alw26I	GTCTC	4 cut(s)	195, 280, 419, 667
AlwI	GGATC	1 cut(s)	1132
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	3 cut(s)	136, 154, 471
ApeKI	GCWGC	8 cut(s)	145, 227, 269, 287, 290, 578, 653, 1093
AspLEI	GCGC	1 cut(s)	927
AspS9I	GGNCC	1 cut(s)	137
AxyI	CCTNAGG	1 cut(s)	946
BanII	GRGCYC	1 cut(s)	789
BbvI	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
BccI	CCATC	7 cut(s)	2, 27, 31, 527, 638, 716, 867
BciT130I	CCWGG	2 cut(s)	470, 563
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	4 cut(s)	195, 280, 419, 667
BfaI	CTAG	2 cut(s)	624, 858
BisI	GCNGC	8 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094
BlsI	GCNGC	8 cut(s)	147, 229, 271, 289, 292, 580, 655, 1095
Bme1390I	CCNGG	2 cut(s)	470, 563
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	3 cut(s)	139, 210, 560
BmrFI	CCNGG	2 cut(s)	470, 563
BmsI	GCATC	2 cut(s)	575, 970
BpmI	CTGGAG	2 cut(s)	860, 1056
BsaAI	YACGTR	1 cut(s)	1052
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	468, 612
BsaXI	ACNNNNNCTCC	4 cut(s)	662, 692, 942, 972
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 371
Bse1I	ACTGG	3 cut(s)	112, 189, 545
Bse21I	CCTNAGG	1 cut(s)	946
BseBI	CCWGG	2 cut(s)	470, 563
BseDI	CCNNGG	2 cut(s)	468, 612
BseGI	GGATG	5 cut(s)	19, 337, 412, 878, 985
BseLI	CCNNNNNNNGG	2 cut(s)	328, 371
BseMII	CTCAG	1 cut(s)	960
BseNI	ACTGG	3 cut(s)	112, 189, 545
BseXI	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
BseYI	CCCAGC	3 cut(s)	554, 731, 868
Bsh1236I	CGCG	1 cut(s)	744
BshFI	GGCC	3 cut(s)	138, 156, 473
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	328, 371
BsmAI	GTCTC	4 cut(s)	195, 280, 419, 667
BsnI	GGCC	3 cut(s)	138, 156, 473
Bso31I	GGTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp143I	GATC	2 cut(s)	339, 1124
BspACI	CCGC	2 cut(s)	744, 1061
BspANI	GGCC	3 cut(s)	138, 156, 473
BspCNI	CTCAG	1 cut(s)	959
BspFNI	CGCG	1 cut(s)	744
BspLI	GGNNCC	3 cut(s)	139, 210, 560
BspPI	GGATC	1 cut(s)	1132
BspQI	GCTCTTC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	419
BsrI	ACTGG	3 cut(s)	112, 189, 545
BssECI	CCNNGG	2 cut(s)	468, 612
BssMI	GATC	2 cut(s)	339, 1124
BssT1I	CCWWGG	1 cut(s)	612
Bst2UI	CCWGG	2 cut(s)	470, 563
Bst4CI	ACNGT	2 cut(s)	678, 922
Bst6I	CTCTTC	2 cut(s)	80, 600
BstBAI	YACGTR	1 cut(s)	1052
BstC8I	GCNNGC	5 cut(s)	131, 150, 154, 1077, 1081
BstDEI	CTNAG	2 cut(s)	66, 946
BstF5I	GGATG	5 cut(s)	19, 337, 412, 878, 985
BstFNI	CGCG	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	927
BstKTI	GATC	2 cut(s)	342, 1127
BstMAI	GTCTC	4 cut(s)	195, 280, 419, 667
BstMBI	GATC	2 cut(s)	339, 1124
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 236, 584, 899
BstNI	CCWGG	2 cut(s)	470, 563
BstSCI	CCNGG	2 cut(s)	468, 561
BstUI	CGCG	1 cut(s)	744
BstV1I	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
BstX2I	RGATCY	1 cut(s)	1124
BstYI	RGATCY	1 cut(s)	1124
Bsu36I	CCTNAGG	1 cut(s)	946
BsuRI	GGCC	3 cut(s)	138, 156, 473
BtsCI	GGATG	5 cut(s)	19, 337, 412, 878, 985
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	3 cut(s)	162, 182, 927
Cac8I	GCNNGC	5 cut(s)	131, 150, 154, 1077, 1081
CaiI	CAGNNNCTG	1 cut(s)	290
CfoI	GCGC	1 cut(s)	927
Cfr13I	GGNCC	1 cut(s)	137
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	2 cut(s)	44, 759
DdeI	CTNAG	2 cut(s)	66, 946
DpnI	GATC	2 cut(s)	341, 1126
DpnII	GATC	2 cut(s)	339, 1124
Eam1104I	CTCTTC	2 cut(s)	80, 600
EarI	CTCTTC	2 cut(s)	80, 600
Eco130I	CCWWGG	1 cut(s)	612
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	789
Eco31I	GGTCTC	1 cut(s)	419
Eco81I	CCTNAGG	1 cut(s)	946
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	468, 561
EcoT14I	CCWWGG	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	2 cut(s)	47, 762
FalI	AAGNNNNNCTT	2 cut(s)	482, 514
FatI	CATG	2 cut(s)	43, 758
FauI	CCCGC	1 cut(s)	1054
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	8 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094
FokI	GGATG	5 cut(s)	6, 344, 419, 885, 992
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	8 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094
FspBI	CTAG	2 cut(s)	624, 858
FspI	TGCGCA	1 cut(s)	926
GlaI	GCGC	1 cut(s)	926
GluI	GCNGC	8 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094
GsaI	CCCAGC	3 cut(s)	558, 735, 872
GsuI	CTGGAG	2 cut(s)	860, 1056
HaeIII	GGCC	3 cut(s)	138, 156, 473
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	927
Hin1II	CATG	2 cut(s)	47, 762
Hin6I	GCGC	1 cut(s)	925
HinP1I	GCGC	1 cut(s)	925
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	325, 806
HpaII	CCGG	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	4 cut(s)	36, 455, 721, 813
Hpy188III	TCNNGA	5 cut(s)	322, 329, 502, 520, 948
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	2 cut(s)	678, 922
HpyCH4IV	ACGT	2 cut(s)	631, 1051
HpyCH4V	TGCA	4 cut(s)	119, 133, 173, 1096
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 236, 584, 899
HpyF3I	CTNAG	2 cut(s)	66, 946
HpySE526I	ACGT	2 cut(s)	631, 1051
Hsp92II	CATG	2 cut(s)	47, 762
HspAI	GCGC	1 cut(s)	925
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	339, 1124
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	4 cut(s)	214, 298, 890, 1037
Lsp1109I	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
LweI	GCATC	2 cut(s)	575, 970
MaeI	CTAG	2 cut(s)	624, 858
MaeII	ACGT	2 cut(s)	631, 1051
MalI	GATC	2 cut(s)	341, 1126
MboI	GATC	2 cut(s)	339, 1124
MboII	GAAGA	3 cut(s)	97, 587, 942
MfeI	CAATTG	3 cut(s)	297, 885, 912
MflI	RGATCY	1 cut(s)	1124
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	7 cut(s)	297, 399, 768, 847, 879, 885, 912
MmeI	TCCRAC	1 cut(s)	745
MnlI	CCTC	9 cut(s)	68, 119, 251, 403, 425, 498, 835, 955, 1000
MseI	TTAA	7 cut(s)	104, 309, 402, 681, 750, 987, 1141
MspA1I	CMGCKG	2 cut(s)	230, 287
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	470, 563
MunI	CAATTG	3 cut(s)	297, 885, 912
MvaI	CCWGG	2 cut(s)	470, 563
MvnI	CGCG	1 cut(s)	744
MwoI	GCNNNNNNNGC	4 cut(s)	135, 236, 584, 899
NdeII	GATC	2 cut(s)	339, 1124
NlaIII	CATG	2 cut(s)	47, 762
NlaIV	GGNNCC	3 cut(s)	139, 210, 560
NsbI	TGCGCA	1 cut(s)	926
PceI	AGGCCT	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	325, 806
PkrI	GCNGC	8 cut(s)	147, 229, 271, 289, 292, 580, 655, 1095
Ppu21I	YACGTR	1 cut(s)	1052
Psp6I	CCWGG	2 cut(s)	468, 561
PspFI	CCCAGC	3 cut(s)	554, 731, 868
PspGI	CCWGG	2 cut(s)	468, 561
PspN4I	GGNNCC	3 cut(s)	139, 210, 560
PspPI	GGNCC	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	1124
PvuII	CAGCTG	2 cut(s)	230, 287
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	7 cut(s)	104, 309, 402, 681, 750, 987, 1141
SatI	GCNGC	8 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094
Sau3AI	GATC	2 cut(s)	339, 1124
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	470, 563
SduI	GDGCHC	1 cut(s)	789
SfaNI	GCATC	2 cut(s)	575, 970
Sse9I	AATT	7 cut(s)	297, 399, 768, 847, 879, 885, 912
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	2 cut(s)	744, 1061
SspMI	CTAG	2 cut(s)	624, 858
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	468, 561
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	678, 922
TaiI	ACGT	2 cut(s)	634, 1054
TasI	AATT	7 cut(s)	297, 399, 768, 847, 879, 885, 912
TfiI	GAWTC	2 cut(s)	325, 806
Tru1I	TTAA	7 cut(s)	104, 309, 402, 681, 750, 987, 1141
Tru9I	TTAA	7 cut(s)	104, 309, 402, 681, 750, 987, 1141
TscAI	CASTG	3 cut(s)	169, 189, 927
TseI	GCWGC	8 cut(s)	145, 227, 269, 287, 290, 578, 653, 1093
TspDTI	ATGAA	2 cut(s)	579, 894
TspRI	CASTG	3 cut(s)	169, 189, 927
XspI	CTAG	2 cut(s)	624, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.