Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013827

Physical Location & Seq

Genomic Coordinates Forward (+)

43968120 .. 43971324

Gene Structure 3205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGTGCTGACAATTCATTTTGCAGCTCAGTGGCTTCAGTTATAATCATGGCTGATGGGTCGTCCCATCCATCTATATTTCAGAAAATACATGGGCAGTCCTGCCTCATTTCTAAGCTTTCTCCCAGCATGAAGAGCAGAAACTATGGTTTAACTGGTGCTTATGCAAATGGAGGCTTGCAAGGCCCCTTGCTGCCAGCATGCCAAAGCACTGCCCTTGCGCAGCTCTCACTGGTGTCTCCCATTTTGGCACAGGCTCCGGCAGAGAAAGGGGCAGCTGGTTTTGCTATTGATTTCCTTATGGGAGGTGTATCTGCTGCTGTTTCTAAAACAGCTGCTGCTCCAATTGAGCGTGTTAAACTACTAATCCAGAATCAGGATGAGATGATCAAGGTTGGTCGGCTTTCTCAACCATACAAGGGAATAACTGACTGCTTTGCCCGAACAATTAAGGATGAGGGTCTCATTTCTCTGTGGAGAGGAAATACTGCTAATGTTATCAGATACTTTCCTACCCAGGCCTTAAACTTTGCCTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAGGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAACCTGGCATCAGGTGGTGCTGCTGGTGCTTCATCTCTTCTGTTTGTTTATTCCTTGGACTTTGCTAGAACACGTTTGGCAAATGATGGTAAGGCTGCCAAAAAGGGTGGGGAGAGACAGTTTAATGGTTTGATTGATGTTTACAAGAAAACCCTAAAGTCTGATGGTATTGCTGGGCTGTATCGCGGATTTAATATCTCATGTGTTGGAATTATTGTGTATCGTGGGCTCTATTTTGGAATGTATGATTCTCTGAAACCTGTGGTTCTGGTGGGTAAGATGGAGGATAATTTCTTTGCTAGTTTTTTGTTGGGATGGGGAATTACAATTGGAGCTGGATTGGCTTCATACCCAATTGACACAGTGCGCAGAAGGATGATGATGACCTCAGGAGAAGCAGTAAAATATAAAAACTCTTTGGATGCCTTTAAGCAAATCATCAAAAATGAGGGTGCTCAATCTCTATTCAAAGGTGCTGGAGCAAACATATTACGTGCTGTTGCAGGTGCTGGTGTGCTTGCTGGCTATGACAAGCTGCAAGTCATTGTTTTTGGCAAGAAGTATGGATCTGGTGGTGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

396

Amino Acids

42.36

Weight (kDa)

9.72

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	94 - 190	3.2e-25	Mitochondrial carrier protein
Mito_carr	PF00153	198 - 290	4.3e-21	Mitochondrial carrier protein
Mito_carr	PF00153	298 - 386	4.7e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28390 AT4G28390
fragaria_vesca	FvH4_6g26500
malus_domestica	MD09G1244400.v1.1 MD17G1236400.v1.1
prunus_persica	Prupe.3G139400_v2.0.a1
pyrus_communis	pycom17g23950
rosa_chinensis	RchiOBHm_Chr2g0127661
rosa_laevigata	RLG00000018944
rosa_multiflora	Rmu_sc0021082.1_g000001 Rmu_ssc0000200.1_g000004
rosa_roxburghii	Rroxscaffold_2G00116690
rosa_rugosa	Rorug02G0271800 Rorug02G0271900 Rorug02G0272000
rosa_samantha	Rh2BG333100
rosa_wichuraiana	Rw2G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AarI	CACCTGC	1 cut(s)	1100
Acc16I	TGCGCA	2 cut(s)	222, 974
Acc36I	ACCTGC	1 cut(s)	1100
AccII	CGCG	1 cut(s)	792
AciI	CCGC	1 cut(s)	792
AclWI	GGATC	1 cut(s)	1180
AcuI	CTGAAG	1 cut(s)	21
AfiI	CCNNNNNNNGG	2 cut(s)	376, 419
AflIII	ACRYGT	1 cut(s)	677
AgsI	TTSAA	5 cut(s)	538, 550, 562, 568, 1075
AjnI	CCWGG	2 cut(s)	516, 609
AluBI	AGCT	7 cut(s)	27, 118, 226, 278, 335, 941, 1141
AluI	AGCT	7 cut(s)	27, 118, 226, 278, 335, 941, 1141
Alw21I	GWGCWC	1 cut(s)	1063
Alw26I	GTCTC	3 cut(s)	243, 467, 715
AlwI	GGATC	1 cut(s)	1180
AlwNI	CAGNNNCTG	2 cut(s)	338, 1115
AoxI	GGCC	2 cut(s)	184, 519
AspLEI	GCGC	2 cut(s)	223, 975
AspS9I	GGNCC	1 cut(s)	185
AxyI	CCTNAGG	1 cut(s)	994
BanII	GRGCYC	1 cut(s)	837
Bbv12I	GWGCWC	1 cut(s)	1063
BccI	CCATC	8 cut(s)	50, 75, 79, 575, 686, 764, 880, 915
BciT130I	CCWGG	2 cut(s)	518, 611
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	3 cut(s)	243, 467, 715
BfaI	CTAG	2 cut(s)	672, 906
BfuAI	ACCTGC	1 cut(s)	1100
Bme1390I	CCNGG	2 cut(s)	518, 611
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	187, 258, 608
BmrFI	CCNGG	2 cut(s)	518, 611
BmsI	GCATC	2 cut(s)	623, 1018
BpmI	CTGGAG	1 cut(s)	1104
BsaAI	YACGTR	1 cut(s)	1100
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	516, 660
BsaXI	ACNNNNNCTCC	4 cut(s)	710, 740, 990, 1020
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 419
Bse1I	ACTGG	3 cut(s)	160, 237, 593
Bse21I	CCTNAGG	1 cut(s)	994
BseBI	CCWGG	2 cut(s)	518, 611
BseDI	CCNNGG	2 cut(s)	516, 660
BseGI	GGATG	6 cut(s)	67, 385, 460, 926, 987, 1033
BseLI	CCNNNNNNNGG	2 cut(s)	376, 419
BseMII	CTCAG	2 cut(s)	42, 1008
BseNI	ACTGG	3 cut(s)	160, 237, 593
BseYI	CCCAGC	3 cut(s)	125, 602, 779
Bsh1236I	CGCG	1 cut(s)	792
BshFI	GGCC	2 cut(s)	186, 521
BsiHKAI	GWGCWC	1 cut(s)	1063
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	376, 419
BsmAI	GTCTC	3 cut(s)	243, 467, 715
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	186, 521
Bso31I	GGTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	837, 1063
Bsp143I	GATC	2 cut(s)	387, 1172
BspACI	CCGC	1 cut(s)	792
BspANI	GGCC	2 cut(s)	186, 521
BspCNI	CTCAG	2 cut(s)	41, 1007
BspFNI	CGCG	1 cut(s)	792
BspLI	GGNNCC	3 cut(s)	187, 258, 608
BspMI	ACCTGC	1 cut(s)	1100
BspPI	GGATC	1 cut(s)	1180
BspQI	GCTCTTC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	467
BsrI	ACTGG	3 cut(s)	160, 237, 593
BssECI	CCNNGG	2 cut(s)	516, 660
BssMI	GATC	2 cut(s)	387, 1172
BssT1I	CCWWGG	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	518, 611
Bst4CI	ACNGT	2 cut(s)	726, 970
Bst6I	CTCTTC	2 cut(s)	128, 648
BstBAI	YACGTR	1 cut(s)	1100
BstC8I	GCNNGC	5 cut(s)	179, 198, 202, 1125, 1129
BstDEI	CTNAG	3 cut(s)	28, 114, 994
BstF5I	GGATG	6 cut(s)	67, 385, 460, 926, 987, 1033
BstFNI	CGCG	1 cut(s)	792
BstHHI	GCGC	2 cut(s)	223, 975
BstKTI	GATC	2 cut(s)	390, 1175
BstMAI	GTCTC	3 cut(s)	243, 467, 715
BstMBI	GATC	2 cut(s)	387, 1172
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 183, 284, 632, 947
BstNI	CCWGG	2 cut(s)	518, 611
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	2 cut(s)	516, 609
BstUI	CGCG	1 cut(s)	792
BstX2I	RGATCY	1 cut(s)	1172
BstYI	RGATCY	1 cut(s)	1172
Bsu36I	CCTNAGG	1 cut(s)	994
BsuRI	GGCC	2 cut(s)	186, 521
BtsCI	GGATG	6 cut(s)	67, 385, 460, 926, 987, 1033
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	4 cut(s)	36, 210, 230, 975
BveI	ACCTGC	1 cut(s)	1100
Cac8I	GCNNGC	5 cut(s)	179, 198, 202, 1125, 1129
CaiI	CAGNNNCTG	2 cut(s)	338, 1115
CfoI	GCGC	2 cut(s)	223, 975
Cfr13I	GGNCC	1 cut(s)	185
CspCI	CAANNNNNGTGG	2 cut(s)	694, 729
CviAII	CATG	5 cut(s)	49, 92, 130, 201, 807
DdeI	CTNAG	3 cut(s)	28, 114, 994
DpnI	GATC	2 cut(s)	389, 1174
DpnII	GATC	2 cut(s)	387, 1172
Eam1104I	CTCTTC	2 cut(s)	128, 648
EarI	CTCTTC	2 cut(s)	128, 648
Eco130I	CCWWGG	1 cut(s)	660
Eco147I	AGGCCT	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	837
Eco31I	GGTCTC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	21
Eco81I	CCTNAGG	1 cut(s)	994
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	516, 609
EcoT14I	CCWWGG	1 cut(s)	660
EcoT38I	GRGCYC	1 cut(s)	837
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	5 cut(s)	52, 95, 133, 204, 810
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	5 cut(s)	48, 91, 129, 200, 806
FbaI	TGATCA	1 cut(s)	387
FokI	GGATG	6 cut(s)	54, 392, 467, 933, 994, 1040
FriOI	GRGCYC	1 cut(s)	837
FspBI	CTAG	2 cut(s)	672, 906
FspI	TGCGCA	2 cut(s)	222, 974
GlaI	GCGC	2 cut(s)	222, 974
GsaI	CCCAGC	3 cut(s)	129, 606, 783
GsuI	CTGGAG	1 cut(s)	1104
HaeIII	GGCC	2 cut(s)	186, 521
HapII	CCGG	1 cut(s)	260
HhaI	GCGC	2 cut(s)	223, 975
Hin1II	CATG	5 cut(s)	52, 95, 133, 204, 810
Hin6I	GCGC	2 cut(s)	221, 973
HinP1I	GCGC	2 cut(s)	221, 973
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	373, 854
HpaII	CCGG	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	4 cut(s)	84, 503, 769, 861
Hpy188III	TCNNGA	5 cut(s)	370, 377, 550, 568, 996
Hpy8I	GTNNAC	1 cut(s)	748
HpyAV	CCTTC	3 cut(s)	544, 565, 972
HpyCH4III	ACNGT	2 cut(s)	726, 970
HpyCH4IV	ACGT	2 cut(s)	679, 1099
HpyCH4V	TGCA	5 cut(s)	24, 167, 181, 1109, 1144
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 183, 284, 632, 947
HpyF3I	CTNAG	3 cut(s)	28, 114, 994
HpySE526I	ACGT	2 cut(s)	679, 1099
Hsp92II	CATG	5 cut(s)	52, 95, 133, 204, 810
HspAI	GCGC	2 cut(s)	221, 973
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	2 cut(s)	387, 1172
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	4 cut(s)	262, 346, 938, 1085
LweI	GCATC	2 cut(s)	623, 1018
MaeI	CTAG	2 cut(s)	672, 906
MaeII	ACGT	2 cut(s)	679, 1099
MalI	GATC	2 cut(s)	389, 1174
MboI	GATC	2 cut(s)	387, 1172
MboII	GAAGA	2 cut(s)	145, 635
MfeI	CAATTG	3 cut(s)	345, 933, 960
MflI	RGATCY	1 cut(s)	1172
MhlI	GDGCHC	2 cut(s)	837, 1063
MluCI	AATT	8 cut(s)	13, 345, 447, 816, 895, 927, 933, 960
MmeI	TCCRAC	1 cut(s)	793
MnlI	CCTC	9 cut(s)	116, 167, 299, 451, 473, 546, 883, 1003, 1048
MseI	TTAA	8 cut(s)	152, 357, 450, 524, 729, 798, 1035, 1189
MspA1I	CMGCKG	2 cut(s)	278, 335
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	518, 611
MunI	CAATTG	3 cut(s)	345, 933, 960
MvaI	CCWGG	2 cut(s)	518, 611
MvnI	CGCG	1 cut(s)	792
MwoI	GCNNNNNNNGC	5 cut(s)	135, 183, 284, 632, 947
NdeII	GATC	2 cut(s)	387, 1172
NlaIII	CATG	5 cut(s)	52, 95, 133, 204, 810
NlaIV	GGNNCC	3 cut(s)	187, 258, 608
NsbI	TGCGCA	2 cut(s)	222, 974
NspI	RCATGY	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	204
PaqCI	CACCTGC	1 cut(s)	1100
PceI	AGGCCT	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	373, 854
Ppu21I	YACGTR	1 cut(s)	1100
PsiI	TTATAA	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	516, 609
PspFI	CCCAGC	3 cut(s)	125, 602, 779
PspGI	CCWGG	2 cut(s)	516, 609
PspN4I	GGNNCC	3 cut(s)	187, 258, 608
PspPI	GGNCC	1 cut(s)	185
PstNI	CAGNNNCTG	2 cut(s)	338, 1115
PsuI	RGATCY	1 cut(s)	1172
PvuII	CAGCTG	2 cut(s)	278, 335
SapI	GCTCTTC	1 cut(s)	128
SaqAI	TTAA	8 cut(s)	152, 357, 450, 524, 729, 798, 1035, 1189
Sau3AI	GATC	2 cut(s)	387, 1172
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	518, 611
SduI	GDGCHC	2 cut(s)	837, 1063
SfaNI	GCATC	2 cut(s)	623, 1018
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	8 cut(s)	13, 345, 447, 816, 895, 927, 933, 960
SseBI	AGGCCT	1 cut(s)	521
SsiI	CCGC	1 cut(s)	792
SspMI	CTAG	2 cut(s)	672, 906
StuI	AGGCCT	1 cut(s)	521
StyD4I	CCNGG	2 cut(s)	516, 609
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	2 cut(s)	726, 970
TaiI	ACGT	2 cut(s)	682, 1102
TasI	AATT	8 cut(s)	13, 345, 447, 816, 895, 927, 933, 960
TfiI	GAWTC	2 cut(s)	373, 854
Tru1I	TTAA	8 cut(s)	152, 357, 450, 524, 729, 798, 1035, 1189
Tru9I	TTAA	8 cut(s)	152, 357, 450, 524, 729, 798, 1035, 1189
TscAI	CASTG	4 cut(s)	36, 217, 237, 975
TspDTI	ATGAA	4 cut(s)	6, 146, 627, 942
TspRI	CASTG	4 cut(s)	36, 217, 237, 975
XceI	RCATGY	1 cut(s)	204
XspI	CTAG	2 cut(s)	672, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.