Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013827

Physical Location & Seq

Genomic Coordinates Reverse (-)

28507079 .. 28508952

Gene Structure 1874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1236400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGATGATGGGTCATCGTATCCATCGGTATTTCAGAAAATACATGGGCAGTCTTACCTCATATGTAGGCTTTCCCCCAAGATTCACACAAGAAACTATGGGGTGAATGGTGCTTATGCCAATGGAGCTTTGCAGAGCCCCCTGCTGCCAACTTTTGACAGCACTGCCCTTGCACAAGTCTCTTCTTTGTCCCCAGTTATGGCGCAGGCCCCGGCAGAGAAAGGTGCAGCTGGTTTTGCTATCGATTTTCTCATGGGAGGTGTATCTGCTGCTGTTTCCAAAACTGCTGCTGCTCCTATTGAGCGTGTTAAACTACTGATACAGAATCAGGATGAGATGATCAAGGCTGGTCGACTTTCTGAACCATACAAAGGTATAACTGACTGCTTTGCCCGAACAATTAAGGATGAAGGTGTCCTTTCTCTGTGGAGAGGAAACACTGCCAATGTTATCAGATACTTCCCTACCCAGGCCTTTAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAGGATAAAGATGGCTACTGGAAGTGGTTCGCTGGGAACCTGGCATCAGGTGGTGCTGCTGGTGCTTCATCTCTTCTTTTTGTGTATTCTCTGGACTTTGCAAGAACACGTTTGGCAAATGATGCTAAGGCTGCCAAGAAGGGTGGTGAAAGGCAGTTTAATGGTTTGGTTGATGTTTACAAGAAAACCCTCAAGTCTGATGGCATTGCTGGGTTATATCGAGGATTCAACATCTCTCTTGTTGGAATTATCGTGTACCGTGGGCTTTATTTTGGAATGTACGATTCTCTGAAACCTGTGGTTCTAACTGGTGGCCTGCAGGTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

284

Amino Acids

30.79

Weight (kDa)

9.58

Isoelectric Point (pI)

24.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	78 - 174	5.5e-26	Mitochondrial carrier protein
Mito_carr	PF00153	182 - 275	3.2e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28390 AT4G28390
fragaria_vesca	FvH4_6g26500
malus_domestica	MD09G1244400.v1.1 MD17G1236400.v1.1
prunus_persica	Prupe.3G139400_v2.0.a1
pyrus_communis	pycom17g23950
rosa_chinensis	RchiOBHm_Chr2g0127661
rosa_laevigata	RLG00000018944
rosa_multiflora	Rmu_sc0021082.1_g000001 Rmu_ssc0000200.1_g000004
rosa_roxburghii	Rroxscaffold_2G00116690
rosa_rugosa	Rorug02G0271800 Rorug02G0271900 Rorug02G0272000
rosa_samantha	Rh2BG333100
rosa_wichuraiana	Rw2G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	832
AccI	GTMKAC	1 cut(s)	352
AfaI	GTAC	2 cut(s)	779, 803
AfiI	CCNNNNNNNGG	3 cut(s)	199, 371, 469
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	5 cut(s)	490, 502, 514, 520, 751
AjnI	CCWGG	2 cut(s)	468, 561
AluBI	AGCT	2 cut(s)	128, 230
AluI	AGCT	2 cut(s)	128, 230
Alw26I	GTCTC	1 cut(s)	184
AoxI	GGCC	3 cut(s)	207, 471, 835
ApeKI	GCWGC	7 cut(s)	145, 227, 269, 287, 290, 578, 653
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	115, 680
BanII	GRGCYC	1 cut(s)	140
BbvI	GCAGC	7 cut(s)	132, 239, 256, 274, 277, 565, 640
BccI	CCATC	4 cut(s)	2, 31, 527, 716
BciT130I	CCWGG	2 cut(s)	470, 563
BciVI	GTATCC	1 cut(s)	30
BclI	TGATCA	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	184
BfmI	CTRYAG	1 cut(s)	839
BfuAI	ACCTGC	1 cut(s)	832
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	7 cut(s)	146, 228, 270, 288, 291, 579, 654
BlsI	GCNGC	7 cut(s)	147, 229, 271, 289, 292, 580, 655
Bme1390I	CCNGG	3 cut(s)	212, 470, 563
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	210, 560
BmrFI	CCNGG	3 cut(s)	212, 470, 563
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	575, 634
BmuI	ACTGGG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	210, 468, 781
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 371, 469
Bse1I	ACTGG	3 cut(s)	194, 545, 835
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	470, 563
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	3 cut(s)	210, 468, 781
BseGI	GGATG	3 cut(s)	10, 337, 412
BseLI	CCNNNNNNNGG	3 cut(s)	199, 371, 469
BseMI	GCAATG	1 cut(s)	726
BseNI	ACTGG	3 cut(s)	194, 545, 835
BseXI	GCAGC	7 cut(s)	132, 239, 256, 274, 277, 565, 640
BseYI	CCCAGC	2 cut(s)	554, 731
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	209, 473, 837
BshVI	ATCGAT	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	3 cut(s)	199, 371, 469
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	3 cut(s)	209, 473, 837
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	339
BspANI	GGCC	3 cut(s)	209, 473, 837
BspDI	ATCGAT	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	210, 560
BspMAI	CTGCAG	1 cut(s)	843
BspMI	ACCTGC	1 cut(s)	832
BsrDI	GCAATG	1 cut(s)	726
BsrI	ACTGG	3 cut(s)	194, 545, 835
BssECI	CCNNGG	3 cut(s)	210, 468, 781
BssMI	GATC	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	470, 563
Bst4CI	ACNGT	1 cut(s)	782
Bst6I	CTCTTC	2 cut(s)	187, 600
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	207, 839
BstDEI	CTNAG	1 cut(s)	648
BstDSI	CCRYGG	1 cut(s)	781
BstF5I	GGATG	3 cut(s)	10, 337, 412
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 236, 584, 644, 653
BstNI	CCWGG	2 cut(s)	470, 563
BstSCI	CCNGG	3 cut(s)	210, 468, 561
BstSFI	CTRYAG	1 cut(s)	839
BstV1I	GCAGC	7 cut(s)	132, 239, 256, 274, 277, 565, 640
Bsu15I	ATCGAT	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	209, 473, 837
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	781
BtsCI	GGATG	3 cut(s)	10, 337, 412
BtsI	GCAGTG	2 cut(s)	162, 438
BtsIMutI	CAGTG	2 cut(s)	162, 438
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	2 cut(s)	207, 839
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	208
ClaI	ATCGAT	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	778, 802
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	2 cut(s)	44, 253
CviQI	GTAC	2 cut(s)	778, 802
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	187, 600
EarI	CTCTTC	2 cut(s)	187, 600
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	468, 561
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	2 cut(s)	47, 256
FalI	AAGNNNNNCTT	4 cut(s)	402, 434, 482, 514
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	43, 252
FauNDI	CATATG	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	7 cut(s)	146, 228, 270, 288, 291, 579, 654
FokI	GGATG	3 cut(s)	17, 344, 419
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	7 cut(s)	146, 228, 270, 288, 291, 579, 654
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	7 cut(s)	146, 228, 270, 288, 291, 579, 654
GsaI	CCCAGC	2 cut(s)	558, 735
HaeIII	GGCC	3 cut(s)	209, 473, 837
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	2 cut(s)	47, 256
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	4 cut(s)	82, 325, 747, 806
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	115, 680
Hpy166II	GTNNAC	3 cut(s)	353, 700, 778
Hpy188I	TCNGA	5 cut(s)	36, 361, 455, 721, 813
Hpy188III	TCNNGA	4 cut(s)	329, 502, 520, 614
Hpy8I	GTNNAC	3 cut(s)	353, 700, 778
HpyAV	CCTTC	3 cut(s)	404, 517, 655
HpyCH4III	ACNGT	1 cut(s)	782
HpyCH4IV	ACGT	1 cut(s)	631
HpyCH4V	TGCA	5 cut(s)	133, 173, 227, 623, 841
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 236, 584, 644, 653
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	1 cut(s)	631
Hsp92II	CATG	2 cut(s)	47, 256
HspAI	GCGC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	2 cut(s)	125, 298
Lsp1109I	GCAGC	7 cut(s)	132, 239, 256, 274, 277, 565, 640
LweI	GCATC	2 cut(s)	575, 634
MaeII	ACGT	1 cut(s)	631
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	2 cut(s)	174, 587
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	2 cut(s)	399, 768
MmeI	TCCRAC	1 cut(s)	745
MnlI	CCTC	6 cut(s)	68, 251, 425, 498, 722, 737
MroXI	GAANNNNTTC	1 cut(s)	548
MseI	TTAA	5 cut(s)	309, 402, 477, 681, 850
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	3 cut(s)	212, 470, 563
MvaI	CCWGG	2 cut(s)	470, 563
MwoI	GCNNNNNNNGC	5 cut(s)	125, 236, 584, 644, 653
NciI	CCSGG	1 cut(s)	212
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	2 cut(s)	47, 256
NlaIV	GGNNCC	2 cut(s)	210, 560
PceI	AGGCCT	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	4 cut(s)	82, 325, 747, 806
PkrI	GCNGC	7 cut(s)	147, 229, 271, 289, 292, 580, 655
Psp6I	CCWGG	2 cut(s)	468, 561
PspFI	CCCAGC	2 cut(s)	554, 731
PspGI	CCWGG	2 cut(s)	468, 561
PspN4I	GGNNCC	2 cut(s)	210, 560
PspPI	GGNCC	1 cut(s)	208
PstI	CTGCAG	1 cut(s)	843
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	2 cut(s)	779, 803
RsaNI	GTAC	2 cut(s)	778, 802
SalI	GTCGAC	1 cut(s)	351
SaqAI	TTAA	5 cut(s)	309, 402, 477, 681, 850
SatI	GCNGC	7 cut(s)	146, 228, 270, 288, 291, 579, 654
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	208
SbfI	CCTGCAGG	1 cut(s)	843
ScrFI	CCNGG	3 cut(s)	212, 470, 563
SdaI	CCTGCAGG	1 cut(s)	843
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	2 cut(s)	575, 634
SfcI	CTRYAG	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse8387I	CCTGCAGG	1 cut(s)	843
Sse9I	AATT	2 cut(s)	399, 768
SseBI	AGGCCT	1 cut(s)	473
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	210, 468, 561
TaaI	ACNGT	1 cut(s)	782
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	3 cut(s)	243, 352, 742
TasI	AATT	2 cut(s)	399, 768
TfiI	GAWTC	4 cut(s)	82, 325, 747, 806
Tru1I	TTAA	5 cut(s)	309, 402, 477, 681, 850
Tru9I	TTAA	5 cut(s)	309, 402, 477, 681, 850
TscAI	CASTG	2 cut(s)	169, 445
TseI	GCWGC	7 cut(s)	145, 227, 269, 287, 290, 578, 653
TspDTI	ATGAA	2 cut(s)	423, 579
TspRI	CASTG	2 cut(s)	169, 445
XmiI	GTMKAC	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.