Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013827

Physical Location & Seq

Genomic Coordinates Reverse (-)

31187057 .. 31190233

Gene Structure 3177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1244400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCTGATGGGTCGTCACGTCCATCGATATTTCAGAAAACATATGGGCAATCTTACCTCATATCTGGGCTTTCCCCCAAGCTGCACACAAGCAACTATGCGGTGACTGGTGCTTATGCCAATGGAGCTTTGCAGAGCCCCCTGCTGCGAACTTTTGATGGCACTGCCCTTGCACAAGTCTCTCCGTTGTCCCCCATTATGGCGCAGGCTCCGGCAGAGAAAGGTGCAGCTGGTTTTGCTGTGGATTTTCTCATGGGAGGCGTGTCTGCTGCTGTTTCCAAAACTGCTGCTGCTCCTATCGAGCGTGTTAAACTACTTATACAGAATCAGGATGAGATGATCAAGACTGGTCGACTTTCTGAACCATACAAGGGTATAAGTGACTGCTTTGCCCGAACAATTAAGGATGAAGGTGTCCTTTCTCTGTGGAGAGGGAATACTGCTAATGTTATCAGATACTTTCCTACCCAGGCCTTAAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAGGATAGAGATGGCTACTGGAAGTGGTTTGCTGGGAACCTGGCATCAGGTGGTGCTGCTGGCGCTTCATCTCTTCTTTTTGTGTACTCTCTGGATTATGCAAGAACACGGTTGGCAAATGATGCCAAGGCTGCCAAAAAGGGTGGTGAAAGGCAGTTTAATGGTTTGGTTGATGTTTACAAGAAAACCCTCAAGTCTGATGGCATCGCTGGGCTATATCGAGGATTCAGTATCTCTTGTGTTGGAATTATCGTTTACCGTGGGCTTTACTTTGGAATGTACGATTCGCTGAAACCTGTGGTTCTAACTGGTGGCCTGCAGGATAGCTTCGTTGCTAGTTTCTTGCTGGGATGGGGAATTACTATCGGTGCTGGATTAGCTTCTTACCCAATTGACACAGTGCGCAGAAGGATGATGATGACCTCAGGAGAAGCAGTTAAATACAATAGCTCTTTGGACGCATTTAAGCAAATCATCAAAAACGAGGGTGCTAAGTCGCTGTTTAAGGGTGCTGGAGCGAACATATTGCGTGCTGTTGCAGGTGCCGGTGTGCTAGCTGGCTATGACAAGCTGCAGGTCGTACTTATTGGCAAGAAGTATGGGTCTGGTGGCGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

381

Amino Acids

40.62

Weight (kDa)

9.76

Isoelectric Point (pI)

26.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	78 - 174	5.6e-26	Mitochondrial carrier protein
Mito_carr	PF00153	182 - 275	6.2e-21	Mitochondrial carrier protein
Mito_carr	PF00153	282 - 372	6.7e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28390 AT4G28390
fragaria_vesca	FvH4_6g26500
malus_domestica	MD09G1244400.v1.1 MD17G1236400.v1.1
prunus_persica	Prupe.3G139400_v2.0.a1
pyrus_communis	pycom17g23950
rosa_chinensis	RchiOBHm_Chr2g0127661
rosa_laevigata	RLG00000018944
rosa_multiflora	Rmu_sc0021082.1_g000001 Rmu_ssc0000200.1_g000004
rosa_roxburghii	Rroxscaffold_2G00116690
rosa_rugosa	Rorug02G0271800 Rorug02G0271900 Rorug02G0272000
rosa_samantha	Rh2BG333100
rosa_wichuraiana	Rw2G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1052
Acc16I	TGCGCA	1 cut(s)	926
Acc36I	ACCTGC	2 cut(s)	1052, 1087
AccB1I	GGYRCC	1 cut(s)	1064
AccI	GTMKAC	1 cut(s)	352
AciI	CCGC	2 cut(s)	101, 1134
AfaI	GTAC	3 cut(s)	608, 803, 1104
AfiI	CCNNNNNNNGG	2 cut(s)	199, 371
AgsI	TTSAA	4 cut(s)	490, 502, 514, 520
AjiI	CACGTC	1 cut(s)	20
AjnI	CCWGG	2 cut(s)	468, 561
AluBI	AGCT	8 cut(s)	82, 128, 230, 849, 902, 972, 1079, 1093
AluI	AGCT	8 cut(s)	82, 128, 230, 849, 902, 972, 1079, 1093
Alw26I	GTCTC	1 cut(s)	184
AoxI	GGCC	2 cut(s)	471, 835
ApeKI	GCWGC	9 cut(s)	82, 145, 227, 269, 287, 290, 578, 653, 1093
AspLEI	GCGC	3 cut(s)	205, 587, 927
AsuHPI	GGTGA	2 cut(s)	115, 680
AsuNHI	GCTAGC	1 cut(s)	1075
AxyI	CCTNAGG	1 cut(s)	946
BanI	GGYRCC	1 cut(s)	1064
BanII	GRGCYC	1 cut(s)	140
BbvI	GCAGC	9 cut(s)	69, 132, 239, 256, 274, 277, 565, 640, 1080
BccI	CCATC	6 cut(s)	2, 31, 152, 527, 716, 867
BcgI	CGANNNNNNTGC	2 cut(s)	1030, 1064
BciT130I	CCWGG	2 cut(s)	470, 563
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	2 cut(s)	858, 1076
BfmI	CTRYAG	2 cut(s)	839, 1094
BfoI	RGCGCY	1 cut(s)	588
BfuAI	ACCTGC	2 cut(s)	1052, 1087
BisI	GCNGC	9 cut(s)	83, 146, 228, 270, 288, 291, 579, 654, 1094
BlsI	GCNGC	9 cut(s)	84, 147, 229, 271, 289, 292, 580, 655, 1095
Bme1390I	CCNGG	2 cut(s)	470, 563
BmgBI	CACGTC	1 cut(s)	20
BmiI	GGNNCC	3 cut(s)	210, 560, 1066
BmrFI	CCNGG	2 cut(s)	470, 563
BmsI	GCATC	3 cut(s)	575, 634, 735
BmtI	GCTAGC	1 cut(s)	1079
BpmI	CTGGAG	1 cut(s)	1056
BpuEI	CTTGAG	1 cut(s)	698
Bsa29I	ATCGAT	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	468, 648, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	942, 972
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 371
Bse118I	RCCGGY	1 cut(s)	1067
Bse1I	ACTGG	4 cut(s)	112, 352, 545, 835
Bse21I	CCTNAGG	1 cut(s)	946
BseBI	CCWGG	2 cut(s)	470, 563
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	468, 648, 781
BseGI	GGATG	4 cut(s)	337, 412, 878, 939
BseLI	CCNNNNNNNGG	2 cut(s)	199, 371
BseMII	CTCAG	1 cut(s)	960
BseNI	ACTGG	4 cut(s)	112, 352, 545, 835
BseXI	GCAGC	9 cut(s)	69, 132, 239, 256, 274, 277, 565, 640, 1080
BseYI	CCCAGC	3 cut(s)	554, 731, 868
BsgI	GTGCAG	2 cut(s)	68, 246
BshFI	GGCC	2 cut(s)	473, 837
BshNI	GGYRCC	1 cut(s)	1064
BshVI	ATCGAT	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	212, 1068
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	199, 371
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	473, 837
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	2 cut(s)	101, 1134
BspANI	GGCC	2 cut(s)	473, 837
BspCNI	CTCAG	1 cut(s)	959
BspDI	ATCGAT	1 cut(s)	26
BspLI	GGNNCC	3 cut(s)	210, 560, 1066
BspMAI	CTGCAG	2 cut(s)	843, 1098
BspMI	ACCTGC	2 cut(s)	1052, 1087
BspOI	GCTAGC	1 cut(s)	1079
BspT107I	GGYRCC	1 cut(s)	1064
BsrFI	RCCGGY	1 cut(s)	1067
BsrI	ACTGG	4 cut(s)	112, 352, 545, 835
BssAI	RCCGGY	1 cut(s)	1067
BssECI	CCNNGG	3 cut(s)	468, 648, 781
BssMI	GATC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	470, 563
Bst4CI	ACNGT	3 cut(s)	633, 782, 922
Bst6I	CTCTTC	1 cut(s)	600
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	6 cut(s)	207, 583, 839, 1053, 1077, 1081
BstDEI	CTNAG	2 cut(s)	946, 1014
BstDSI	CCRYGG	1 cut(s)	781
BstF5I	GGATG	4 cut(s)	337, 412, 878, 939
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	3 cut(s)	205, 587, 927
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 236, 584, 644, 653, 899
BstNI	CCWGG	2 cut(s)	470, 563
BstSCI	CCNGG	2 cut(s)	468, 561
BstSFI	CTRYAG	2 cut(s)	839, 1094
BstV1I	GCAGC	9 cut(s)	69, 132, 239, 256, 274, 277, 565, 640, 1080
Bsu15I	ATCGAT	1 cut(s)	26
Bsu36I	CCTNAGG	1 cut(s)	946
BsuRI	GGCC	2 cut(s)	473, 837
BsuTUI	ATCGAT	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	781
BtgZI	GCGATG	1 cut(s)	712
BtrI	CACGTC	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	337, 412, 878, 939
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	162, 927
BveI	ACCTGC	2 cut(s)	1052, 1087
Cac8I	GCNNGC	6 cut(s)	207, 583, 839, 1053, 1077, 1081
CfoI	GCGC	3 cut(s)	205, 587, 927
Cfr10I	RCCGGY	1 cut(s)	1067
ClaI	ATCGAT	1 cut(s)	26
CseI	GACGC	1 cut(s)	989
Csp6I	GTAC	3 cut(s)	607, 802, 1103
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	1 cut(s)	253
CviQI	GTAC	3 cut(s)	607, 802, 1103
DdeI	CTNAG	2 cut(s)	946, 1014
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	648
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	946
EcoRII	CCWGG	2 cut(s)	468, 561
EcoT14I	CCWWGG	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	1 cut(s)	256
FalI	AAGNNNNNCTT	4 cut(s)	402, 434, 482, 514
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	1 cut(s)	252
FauNDI	CATATG	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	9 cut(s)	83, 146, 228, 270, 288, 291, 579, 654, 1094
FokI	GGATG	4 cut(s)	344, 419, 885, 946
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	9 cut(s)	83, 146, 228, 270, 288, 291, 579, 654, 1094
FspBI	CTAG	2 cut(s)	858, 1076
FspI	TGCGCA	1 cut(s)	926
GlaI	GCGC	3 cut(s)	204, 586, 926
GluI	GCNGC	9 cut(s)	83, 146, 228, 270, 288, 291, 579, 654, 1094
GsaI	CCCAGC	3 cut(s)	558, 735, 872
GsuI	CTGGAG	1 cut(s)	1056
HaeII	RGCGCY	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	473, 837
HapII	CCGG	2 cut(s)	212, 1068
HgaI	GACGC	1 cut(s)	989
HhaI	GCGC	3 cut(s)	205, 587, 927
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	3 cut(s)	203, 585, 925
HinP1I	GCGC	3 cut(s)	203, 585, 925
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	3 cut(s)	325, 747, 806
HpaII	CCGG	2 cut(s)	212, 1068
HphI	GGTGA	2 cut(s)	115, 680
Hpy166II	GTNNAC	4 cut(s)	353, 607, 700, 778
Hpy188I	TCNGA	4 cut(s)	36, 361, 455, 721
Hpy188III	TCNNGA	6 cut(s)	329, 343, 502, 520, 614, 948
Hpy8I	GTNNAC	4 cut(s)	353, 607, 700, 778
HpyAV	CCTTC	3 cut(s)	404, 517, 924
HpyCH4III	ACNGT	3 cut(s)	633, 782, 922
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	8 cut(s)	85, 133, 173, 227, 623, 841, 1061, 1096
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 236, 584, 644, 653, 899
HpyF3I	CTNAG	2 cut(s)	946, 1014
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	3 cut(s)	203, 585, 925
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	4 cut(s)	125, 214, 298, 1037
Lsp1109I	GCAGC	9 cut(s)	69, 132, 239, 256, 274, 277, 565, 640, 1080
LweI	GCATC	3 cut(s)	575, 634, 735
MaeI	CTAG	2 cut(s)	858, 1076
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	3 cut(s)	15, 103, 380
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	1 cut(s)	587
MfeI	CAATTG	1 cut(s)	912
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	4 cut(s)	399, 768, 879, 912
MmeI	TCCRAC	1 cut(s)	745
MnlI	CCTC	8 cut(s)	68, 251, 425, 498, 722, 737, 955, 1000
MseI	TTAA	8 cut(s)	309, 402, 476, 681, 960, 987, 1026, 1141
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	2 cut(s)	212, 1068
MspR9I	CCNGG	2 cut(s)	470, 563
MunI	CAATTG	1 cut(s)	912
MvaI	CCWGG	2 cut(s)	470, 563
MwoI	GCNNNNNNNGC	6 cut(s)	125, 236, 584, 644, 653, 899
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	1 cut(s)	339
NheI	GCTAGC	1 cut(s)	1075
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	3 cut(s)	210, 560, 1066
NmuCI	GTSAC	3 cut(s)	15, 103, 380
NsbI	TGCGCA	1 cut(s)	926
PaqCI	CACCTGC	1 cut(s)	1052
PceI	AGGCCT	1 cut(s)	473
PfeI	GAWTC	3 cut(s)	325, 747, 806
PkrI	GCNGC	9 cut(s)	84, 147, 229, 271, 289, 292, 580, 655, 1095
Psp6I	CCWGG	2 cut(s)	468, 561
PspFI	CCCAGC	3 cut(s)	554, 731, 868
PspGI	CCWGG	2 cut(s)	468, 561
PspN4I	GGNNCC	3 cut(s)	210, 560, 1066
PstI	CTGCAG	2 cut(s)	843, 1098
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	3 cut(s)	608, 803, 1104
RsaNI	GTAC	3 cut(s)	607, 802, 1103
SalI	GTCGAC	1 cut(s)	351
SaqAI	TTAA	8 cut(s)	309, 402, 476, 681, 960, 987, 1026, 1141
SatI	GCNGC	9 cut(s)	83, 146, 228, 270, 288, 291, 579, 654, 1094
Sau3AI	GATC	1 cut(s)	339
SbfI	CCTGCAGG	1 cut(s)	843
ScrFI	CCNGG	2 cut(s)	470, 563
SdaI	CCTGCAGG	1 cut(s)	843
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	3 cut(s)	575, 634, 735
SfcI	CTRYAG	2 cut(s)	839, 1094
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse8387I	CCTGCAGG	1 cut(s)	843
Sse9I	AATT	4 cut(s)	399, 768, 879, 912
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	2 cut(s)	101, 1134
SspMI	CTAG	2 cut(s)	858, 1076
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	468, 561
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	3 cut(s)	633, 782, 922
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	4 cut(s)	26, 300, 352, 742
TasI	AATT	4 cut(s)	399, 768, 879, 912
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	3 cut(s)	325, 747, 806
Tru1I	TTAA	8 cut(s)	309, 402, 476, 681, 960, 987, 1026, 1141
Tru9I	TTAA	8 cut(s)	309, 402, 476, 681, 960, 987, 1026, 1141
TscAI	CASTG	2 cut(s)	169, 927
TseFI	GTSAC	3 cut(s)	15, 103, 380
TseI	GCWGC	9 cut(s)	82, 145, 227, 269, 287, 290, 578, 653, 1093
Tsp45I	GTSAC	3 cut(s)	15, 103, 380
TspDTI	ATGAA	2 cut(s)	423, 579
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	2 cut(s)	169, 927
XmiI	GTMKAC	1 cut(s)	352
XspI	CTAG	2 cut(s)	858, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.