Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013827

Physical Location & Seq

Genomic Coordinates Reverse (-)

22197116 .. 22198913

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGATGATGGGTCATCGTATCCATCGGTATTTCAGAAAATACATGGGCAGTCTTACCTCATATGTAGGCTTTCCCCCAGGATTCACACAAGAAACTATGGGGTGAATGGTGCTTATGCCAATGGAGCTTTGCAGAGCCCCCTGCTGCCAACTTTTGACAGCACTGCCCTTGCACAAGTCTGTTCTTTGTCCCCAATTATGGTGCAGGCCCCGGCAGAGAAAGGTGCAGCTGGTTTTGCTATCGATTTTCTCATGGGAGGTGTATCTGCTGCTGTTTCCAAAACTGCTGCTGCTCCTATTGAGCGTGTTAAACTACTGATACAGAATCAGGATGAGATGATCAATTCTGGTCGACTTTCTGAACCATACAAGGGTATAACTGACTGCTTTGCCCGAACAATTAAGGATGAAGGTGTTTTTTCTCTGTGGAGAGGAAACACTGCCAATGTTATCAGATACTTCCCTACCCAGGCCTTTAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAGGATAAAGATGGCTACTGGAAGTGGTTCGCTGGGAACCTGGCATCAGGTGGTGCTGCTGGTGCTTCATCTCTTATTTTTGTGTATTCTCTGGACTTTGCAAGAACACGTTTGGCAAATGATGCCAAGGCTGCCAAGAAGGGTGGTGAAAGGCAGTTTAATGGTTTGGTTGATGTTTACAAGAAAACCCTCAAGTCTGATGGCATTGCGGGGTTATATCGAGGATTCAACATCTCTCTTGTTGGAATTATTGTGTACCGCGGGCTTTACTTTGGCATGTACGATTCTCTGAAACCTGTGGTTCTAATTGGTGGCCTGCAGGATAGCTTCTTTGCTAGCTTCTTGCTGGGATGGGGAATTACGATCGGTGCTGGATTAGCTTCTTACCCTTTGGACACGGTGCGCAGAAGGATGATGATGACCTCAGGAGAAGCTGTGAAATACAATAGCTCTTTGGATGCATTTAAGCAAATTATAAAAAACGAAGGTGCTAAGTCACTGTTTAAGGGTGCTGGAGCAAACATATTGCGTGCTGTTGCAGGTGCCGGTGTGCTTGCTGGCTATGACAAGCTGCAAGTCGTACTTCTTGGCAAAAAGTATGGGTCTGGCGGCGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

381

Amino Acids

40.98

Weight (kDa)

9.67

Isoelectric Point (pI)

25.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	78 - 174	7.7e-26	Mitochondrial carrier protein
Mito_carr	PF00153	182 - 274	8e-21	Mitochondrial carrier protein
Mito_carr	PF00153	282 - 372	7.6e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28390 AT4G28390
fragaria_vesca	FvH4_6g26500
malus_domestica	MD09G1244400.v1.1 MD17G1236400.v1.1
prunus_persica	Prupe.3G139400_v2.0.a1
pyrus_communis	pycom17g23950
rosa_chinensis	RchiOBHm_Chr2g0127661
rosa_laevigata	RLG00000018944
rosa_multiflora	Rmu_sc0021082.1_g000001 Rmu_ssc0000200.1_g000004
rosa_roxburghii	Rroxscaffold_2G00116690
rosa_rugosa	Rorug02G0271800 Rorug02G0271900 Rorug02G0272000
rosa_samantha	Rh2BG333100
rosa_wichuraiana	Rw2G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	998
AarI	CACCTGC	1 cut(s)	1052
Acc16I	TGCGCA	1 cut(s)	926
Acc36I	ACCTGC	1 cut(s)	1052
AccB1I	GGYRCC	1 cut(s)	1064
AccI	GTMKAC	1 cut(s)	352
AccII	CGCG	1 cut(s)	783
AciI	CCGC	5 cut(s)	731, 781, 783, 1131, 1134
AfaI	GTAC	3 cut(s)	779, 803, 1104
AfiI	CCNNNNNNNGG	3 cut(s)	199, 371, 469
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	5 cut(s)	490, 502, 514, 520, 751
AjnI	CCWGG	3 cut(s)	77, 468, 561
AluBI	AGCT	8 cut(s)	128, 230, 849, 861, 902, 956, 972, 1093
AluI	AGCT	8 cut(s)	128, 230, 849, 861, 902, 956, 972, 1093
AoxI	GGCC	3 cut(s)	207, 471, 835
ApeKI	GCWGC	8 cut(s)	145, 227, 269, 287, 290, 578, 653, 1093
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	927
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	115, 680
AsuNHI	GCTAGC	1 cut(s)	857
AxyI	CCTNAGG	1 cut(s)	946
BanI	GGYRCC	1 cut(s)	1064
BanII	GRGCYC	1 cut(s)	140
BbvI	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
BccI	CCATC	5 cut(s)	2, 31, 527, 716, 867
BciT130I	CCWGG	3 cut(s)	79, 470, 563
BciVI	GTATCC	1 cut(s)	30
BclI	TGATCA	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	212
BfaI	CTAG	1 cut(s)	858
BfmI	CTRYAG	1 cut(s)	839
BfuAI	ACCTGC	1 cut(s)	1052
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	9 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094, 1132
BlsI	GCNGC	9 cut(s)	147, 229, 271, 289, 292, 580, 655, 1095, 1133
Bme1390I	CCNGG	4 cut(s)	79, 212, 470, 563
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	3 cut(s)	210, 560, 1066
BmrFI	CCNGG	4 cut(s)	79, 212, 470, 563
BmsI	GCATC	3 cut(s)	575, 634, 970
BmtI	GCTAGC	1 cut(s)	861
BpmI	CTGGAG	1 cut(s)	1056
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	243
BsaJI	CCNNGG	5 cut(s)	77, 210, 468, 648, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	942, 972
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 371, 469
Bse118I	RCCGGY	1 cut(s)	1067
Bse1I	ACTGG	1 cut(s)	545
Bse21I	CCTNAGG	1 cut(s)	946
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	3 cut(s)	79, 470, 563
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	5 cut(s)	77, 210, 468, 648, 781
BseGI	GGATG	6 cut(s)	10, 337, 412, 878, 939, 985
BseLI	CCNNNNNNNGG	3 cut(s)	199, 371, 469
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	1 cut(s)	960
BseNI	ACTGG	1 cut(s)	545
BseXI	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
BseYI	CCCAGC	2 cut(s)	554, 868
BsgI	GTGCAG	2 cut(s)	224, 246
Bsh1236I	CGCG	1 cut(s)	783
Bsh1285I	CGRYCG	1 cut(s)	888
BshFI	GGCC	3 cut(s)	209, 473, 837
BshNI	GGYRCC	1 cut(s)	1064
BshVI	ATCGAT	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	888
BsiSI	CCGG	2 cut(s)	212, 1068
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	3 cut(s)	199, 371, 469
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	3 cut(s)	209, 473, 837
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	339, 885
BspACI	CCGC	5 cut(s)	731, 781, 783, 1131, 1134
BspANI	GGCC	3 cut(s)	209, 473, 837
BspCNI	CTCAG	1 cut(s)	959
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	783
BspLI	GGNNCC	3 cut(s)	210, 560, 1066
BspMAI	CTGCAG	1 cut(s)	843
BspMI	ACCTGC	1 cut(s)	1052
BspOI	GCTAGC	1 cut(s)	861
BspT107I	GGYRCC	1 cut(s)	1064
BsrDI	GCAATG	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	1067
BsrI	ACTGG	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	1067
BssECI	CCNNGG	5 cut(s)	77, 210, 468, 648, 781
BssMI	GATC	2 cut(s)	339, 885
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	3 cut(s)	79, 470, 563
Bst4CI	ACNGT	2 cut(s)	922, 1023
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	7 cut(s)	207, 785, 839, 859, 1053, 1077, 1081
BstDEI	CTNAG	2 cut(s)	946, 1014
BstDSI	CCRYGG	1 cut(s)	781
BstF5I	GGATG	6 cut(s)	10, 337, 412, 878, 939, 985
BstFNI	CGCG	1 cut(s)	783
BstHHI	GCGC	1 cut(s)	927
BstKTI	GATC	2 cut(s)	342, 888
BstMBI	GATC	2 cut(s)	339, 885
BstMCI	CGRYCG	1 cut(s)	888
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 236, 584, 644, 653, 899
BstNI	CCWGG	3 cut(s)	79, 470, 563
BstNSI	RCATGY	1 cut(s)	802
BstSCI	CCNGG	4 cut(s)	77, 210, 468, 561
BstSFI	CTRYAG	1 cut(s)	839
BstUI	CGCG	1 cut(s)	783
BstV1I	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
Bsu15I	ATCGAT	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	946
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	209, 473, 837
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	781
BtsCI	GGATG	6 cut(s)	10, 337, 412, 878, 939, 985
BtsI	GCAGTG	2 cut(s)	162, 438
BtsIMutI	CAGTG	3 cut(s)	162, 438, 1019
BveI	ACCTGC	1 cut(s)	1052
Cac8I	GCNNGC	7 cut(s)	207, 785, 839, 859, 1053, 1077, 1081
CfoI	GCGC	1 cut(s)	927
Cfr10I	RCCGGY	1 cut(s)	1067
Cfr13I	GGNCC	1 cut(s)	208
Cfr42I	CCGCGG	1 cut(s)	784
ClaI	ATCGAT	1 cut(s)	243
Csp6I	GTAC	3 cut(s)	778, 802, 1103
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	3 cut(s)	44, 253, 799
CviQI	GTAC	3 cut(s)	778, 802, 1103
DdeI	CTNAG	2 cut(s)	946, 1014
DpnI	GATC	2 cut(s)	341, 887
DpnII	GATC	2 cut(s)	339, 885
Eco130I	CCWWGG	1 cut(s)	648
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	946
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	3 cut(s)	77, 468, 561
EcoT14I	CCWWGG	1 cut(s)	648
EcoT22I	ATGCAT	1 cut(s)	985
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	3 cut(s)	47, 256, 802
FalI	AAGNNNNNCTT	4 cut(s)	482, 514, 1089, 1121
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	3 cut(s)	43, 252, 798
FauI	CCCGC	2 cut(s)	724, 776
FauNDI	CATATG	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	9 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094, 1132
FokI	GGATG	6 cut(s)	17, 344, 419, 885, 946, 992
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	9 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094, 1132
FspBI	CTAG	1 cut(s)	858
FspI	TGCGCA	1 cut(s)	926
GlaI	GCGC	1 cut(s)	926
GluI	GCNGC	9 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094, 1132
GsaI	CCCAGC	2 cut(s)	558, 872
GsuI	CTGGAG	1 cut(s)	1056
HaeIII	GGCC	3 cut(s)	209, 473, 837
HapII	CCGG	2 cut(s)	212, 1068
HhaI	GCGC	1 cut(s)	927
Hin1II	CATG	3 cut(s)	47, 256, 802
Hin6I	GCGC	1 cut(s)	925
HinP1I	GCGC	1 cut(s)	925
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	4 cut(s)	82, 325, 747, 806
HpaII	CCGG	2 cut(s)	212, 1068
HphI	GGTGA	2 cut(s)	115, 680
Hpy166II	GTNNAC	3 cut(s)	353, 700, 778
Hpy188I	TCNGA	5 cut(s)	36, 361, 455, 721, 813
Hpy188III	TCNNGA	5 cut(s)	329, 502, 520, 614, 948
Hpy8I	GTNNAC	3 cut(s)	353, 700, 778
HpyAV	CCTTC	5 cut(s)	404, 517, 655, 924, 1001
HpyCH4III	ACNGT	2 cut(s)	922, 1023
HpyCH4IV	ACGT	1 cut(s)	631
HpyCH4V	TGCA	9 cut(s)	133, 173, 205, 227, 623, 841, 983, 1061, 1096
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 236, 584, 644, 653, 899
HpyF3I	CTNAG	2 cut(s)	946, 1014
HpySE526I	ACGT	1 cut(s)	631
Hsp92II	CATG	3 cut(s)	47, 256, 802
HspAI	GCGC	1 cut(s)	925
Ksp22I	TGATCA	1 cut(s)	339
KspI	CCGCGG	1 cut(s)	784
Kzo9I	GATC	2 cut(s)	339, 885
LmnI	GCTCC	3 cut(s)	125, 298, 1037
Lsp1109I	GCAGC	8 cut(s)	132, 239, 256, 274, 277, 565, 640, 1080
LweI	GCATC	3 cut(s)	575, 634, 970
MaeI	CTAG	1 cut(s)	858
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	1 cut(s)	1017
MalI	GATC	2 cut(s)	341, 887
MboI	GATC	2 cut(s)	339, 885
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	7 cut(s)	195, 343, 399, 768, 828, 879, 993
MmeI	TCCRAC	1 cut(s)	745
MnlI	CCTC	7 cut(s)	68, 251, 425, 498, 722, 737, 955
Mph1103I	ATGCAT	1 cut(s)	985
MroXI	GAANNNNTTC	1 cut(s)	548
MseI	TTAA	7 cut(s)	309, 402, 477, 681, 987, 1026, 1141
MspA1I	CMGCKG	2 cut(s)	230, 783
MspI	CCGG	2 cut(s)	212, 1068
MspR9I	CCNGG	4 cut(s)	79, 212, 470, 563
MvaI	CCWGG	3 cut(s)	79, 470, 563
MvnI	CGCG	1 cut(s)	783
MwoI	GCNNNNNNNGC	6 cut(s)	125, 236, 584, 644, 653, 899
NciI	CCSGG	1 cut(s)	212
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	2 cut(s)	339, 885
NheI	GCTAGC	1 cut(s)	857
NlaIII	CATG	3 cut(s)	47, 256, 802
NlaIV	GGNNCC	3 cut(s)	210, 560, 1066
NmuCI	GTSAC	1 cut(s)	1017
NsbI	TGCGCA	1 cut(s)	926
NsiI	ATGCAT	1 cut(s)	985
NspI	RCATGY	1 cut(s)	802
PaqCI	CACCTGC	1 cut(s)	1052
PceI	AGGCCT	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	4 cut(s)	82, 325, 747, 806
PkrI	GCNGC	9 cut(s)	147, 229, 271, 289, 292, 580, 655, 1095, 1133
Ple19I	CGATCG	1 cut(s)	888
PsiI	TTATAA	1 cut(s)	998
Psp6I	CCWGG	3 cut(s)	77, 468, 561
PspFI	CCCAGC	2 cut(s)	554, 868
PspGI	CCWGG	3 cut(s)	77, 468, 561
PspN4I	GGNNCC	3 cut(s)	210, 560, 1066
PspPI	GGNCC	1 cut(s)	208
PstI	CTGCAG	1 cut(s)	843
PvuI	CGATCG	1 cut(s)	888
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	3 cut(s)	779, 803, 1104
RsaNI	GTAC	3 cut(s)	778, 802, 1103
SacII	CCGCGG	1 cut(s)	784
SalI	GTCGAC	1 cut(s)	351
SaqAI	TTAA	7 cut(s)	309, 402, 477, 681, 987, 1026, 1141
SatI	GCNGC	9 cut(s)	146, 228, 270, 288, 291, 579, 654, 1094, 1132
Sau3AI	GATC	2 cut(s)	339, 885
Sau96I	GGNCC	1 cut(s)	208
SbfI	CCTGCAGG	1 cut(s)	843
ScrFI	CCNGG	4 cut(s)	79, 212, 470, 563
SdaI	CCTGCAGG	1 cut(s)	843
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	3 cut(s)	575, 634, 970
SfcI	CTRYAG	1 cut(s)	839
Sfr303I	CCGCGG	1 cut(s)	784
SgrBI	CCGCGG	1 cut(s)	784
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse8387I	CCTGCAGG	1 cut(s)	843
Sse9I	AATT	7 cut(s)	195, 343, 399, 768, 828, 879, 993
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	5 cut(s)	731, 781, 783, 1131, 1134
SspMI	CTAG	1 cut(s)	858
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	4 cut(s)	77, 210, 468, 561
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	922, 1023
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	3 cut(s)	243, 352, 742
TasI	AATT	7 cut(s)	195, 343, 399, 768, 828, 879, 993
TauI	GCSGC	1 cut(s)	1134
TfiI	GAWTC	4 cut(s)	82, 325, 747, 806
Tru1I	TTAA	7 cut(s)	309, 402, 477, 681, 987, 1026, 1141
Tru9I	TTAA	7 cut(s)	309, 402, 477, 681, 987, 1026, 1141
TscAI	CASTG	3 cut(s)	169, 445, 1026
TseFI	GTSAC	1 cut(s)	1017
TseI	GCWGC	8 cut(s)	145, 227, 269, 287, 290, 578, 653, 1093
Tsp45I	GTSAC	1 cut(s)	1017
TspDTI	ATGAA	2 cut(s)	423, 579
TspRI	CASTG	3 cut(s)	169, 445, 1026
XceI	RCATGY	1 cut(s)	802
XmiI	GTMKAC	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	1 cut(s)	858
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.