Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013827

Physical Location & Seq

Genomic Coordinates Reverse (-)

28911629 .. 28914647

Gene Structure 3019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0272000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGGTAGACATCTTCTTTTACACTTCTCTCTCCATCATCGTGTGCTTGGTCATCACTCTAAAGCTGTTTAAACTGCAACGTTACCCTAACCTCCCTCCAAGTCCTTCCTTATGTCTTCCGATTATCAATCACCTCTACCTTCTCAAACCCCCGGTCCACCGCACCTTCCACCGGCTCTCACAGAAACACGGTCCCATTTTCTCCCTCTGGTTCGGTTCCCGCTACGTGGTCATTATCTCTTCCTCCTCAGCTGTGCAAGAATGCTTCACCAAAAACGACATCGTGTTGGCAAACCGTCCCCCTACGCTCCTGACTAAGCACTTTGCGTACAACAGCACCACCATTGCGAGCTCCCCCTACGGCGATCACTGGCGAAATGTTCGACGTATCGGCACTGTCGAGGTCTTGTCCACCAGCCGCCTCAACTCTTTCTCAGATGTCAGAAAAGAAGAAGTAAAGCACTTGCTCCGTAAGCTTTTTCTAAACACAAAAGAAGAAGAAGGTCGTTTTGTGAAAGTGGAGCTGAGGTCTATGTTATATGAGCTGACCTTCAACAACATAATGACAATGATGGTGGGGAAGAGGTATGTTGGGGACCATGTTGCGAGCAAGAAAGAGGGGAAGGAGTTCATTGAGATCATGGATGAGGTGTTTTCGTACAGCTCGGGAACCAACCCAAGAGAATTCATGCCCTTTTTCAGATGGTTTTGTGGTAATGGTTATGAGAGGAAGGTGAAGAAGTTGGGCAAGAGAGCAGATATGTTTTTGCAACGTCTGATTGATGAGCACCGGAACAAGAGTGCTTCAGAGAGTAAAAATACCATGATCGACCACATGCTTTCTCAGCAGGAGTCAGAACCTGAATATTACACCGATGAGATTATCAAAGGACTTATACTGAATCTATTATTGGCGGGCACTGATACATCGGCAGTGACATTAGAATGGGCCATGTCTGGTTTGCTAAACCATCCAGATATGTTAGATAAGGCTAGAGCTGAACTGGATGCTCAACTTGGTCAAGAACGCTTAGTAGACGAACAAGACATTTCTAAGCTTCTCTACCTACAAAGTATTATCTCCGAGACTCTTCGATTGTATCCAGCGGCACCAATGCTATTACCACATTTTGCATCAGATGATTGCATTGTAGGTGGATTTGATATACCACGTGACACGTTGTTATTGGTCAATGCATGGGCCATACATAGAGACCCGAAGTTGTGGGATGATCCAGAAAGCTTCAAACCTGAGAGGTTTGAAATCGGCAGTAAGGACGAGGCACACAAATATATGCCATTTGGAATGGGAAGAAGGGCATGCCCCGGAGTAGGATTGGCCCAACGTGAGGTGGGCTTGACTTTGGCCTCATTGATTCAATGCTTTGAGTGGGAGAGGGTTAGTAAGGAGGAGGTTGATATGACTGAAGGGACAGGACTCACCATGTATAAACTAGTGCCATTGGAGACCATGTACAAACCACGCTCAATTTTTAACATGATTTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

503

Amino Acids

57.94

Weight (kDa)

7.25

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	33 - 480	3.4e-101	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28390 AT4G28390
fragaria_vesca	FvH4_6g26500
malus_domestica	MD09G1244400.v1.1 MD17G1236400.v1.1
prunus_persica	Prupe.3G139400_v2.0.a1
pyrus_communis	pycom17g23950
rosa_chinensis	RchiOBHm_Chr2g0127661
rosa_laevigata	RLG00000018944
rosa_multiflora	Rmu_sc0021082.1_g000001 Rmu_ssc0000200.1_g000004
rosa_roxburghii	Rroxscaffold_2G00116690
rosa_rugosa	Rorug02G0271800 Rorug02G0271900 Rorug02G0272000
rosa_samantha	Rh2BG333100
rosa_wichuraiana	Rw2G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1108
AccI	GTMKAC	2 cut(s)	6, 1035
AciI	CCGC	5 cut(s)	160, 220, 418, 914, 1106
AclI	AACGTT	1 cut(s)	79
AclWI	GGATC	1 cut(s)	1226
AcsI	RAATTY	1 cut(s)	683
AcuI	CTGAAG	2 cut(s)	789, 1446
AcvI	CACGTG	1 cut(s)	1172
AfaI	GTAC	3 cut(s)	329, 659, 1475
AfiI	CCNNNNNNNGG	4 cut(s)	171, 226, 1331, 1348
AflIII	ACRYGT	1 cut(s)	1176
AgsI	TTSAA	4 cut(s)	553, 1246, 1262, 1379
AhlI	ACTAGT	1 cut(s)	1453
AjuI	GAANNNNNNNTTGG	2 cut(s)	893, 925
Alw21I	GWGCWC	2 cut(s)	353, 789
Alw26I	GTCTC	3 cut(s)	1079, 1206, 1460
AlwI	GGATC	1 cut(s)	1226
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	1 cut(s)	664
AoxI	GGCC	4 cut(s)	948, 1200, 1338, 1365
ApoI	RAATTY	1 cut(s)	683
ArsI	GACNNNNNNTTYG	2 cut(s)	138, 170
Asp700I	GAANNNNTTC	1 cut(s)	626
AspS9I	GGNCC	6 cut(s)	154, 191, 595, 948, 1200, 1339
AsuC2I	CCSGG	2 cut(s)	152, 1326
AsuHPI	GGTGA	4 cut(s)	122, 259, 745, 1432
AvaI	CYCGRG	1 cut(s)	664
AvaII	GGWCC	3 cut(s)	154, 191, 595
BaeGI	GKGCMC	1 cut(s)	920
BanI	GGYRCC	1 cut(s)	1108
BanII	GRGCYC	1 cut(s)	353
BbrPI	CACGTG	1 cut(s)	1172
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	2 cut(s)	353, 789
BbvCI	CCTCAGC	2 cut(s)	247, 524
BccI	CCATC	4 cut(s)	41, 565, 696, 978
BceAI	ACGGC	1 cut(s)	376
BciVI	GTATCC	1 cut(s)	1110
BcnI	CCSGG	2 cut(s)	152, 1326
BcoDI	GTCTC	3 cut(s)	1079, 1206, 1460
BcuI	ACTAGT	1 cut(s)	1453
BfaI	CTAG	2 cut(s)	993, 1454
BfuI	GTATCC	1 cut(s)	1110
BisI	GCNGC	2 cut(s)	418, 1107
BlsI	GCNGC	2 cut(s)	419, 1108
Bme1390I	CCNGG	2 cut(s)	152, 1326
Bme18I	GGWCC	3 cut(s)	154, 191, 595
BmeT110I	CYCGRG	1 cut(s)	664
BmgT120I	GGNCC	6 cut(s)	154, 191, 595, 948, 1200, 1339
BmiI	GGNNCC	5 cut(s)	193, 217, 596, 670, 1110
BmrFI	CCNGG	2 cut(s)	152, 1326
BmsI	GCATC	2 cut(s)	997, 1142
BpiI	GAAGAC	1 cut(s)	107
Bpu10I	CCTNAGC	2 cut(s)	247, 524
BpuMI	CCSGG	2 cut(s)	152, 1326
BsaAI	YACGTR	2 cut(s)	226, 1172
BsaI	GGTCTC	2 cut(s)	1206, 1460
BsaJI	CCNNGG	2 cut(s)	150, 1324
BsaWI	WCCGGW	1 cut(s)	789
BsaXI	ACNNNNNCTCC	4 cut(s)	512, 542, 1457, 1487
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 226, 1331, 1348
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	374, 1008
Bse3DI	GCAATG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	150, 1324
BseGI	GGATG	4 cut(s)	649, 970, 1012, 1234
BseLI	CCNNNNNNNGG	4 cut(s)	171, 226, 1331, 1348
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	5 cut(s)	261, 447, 515, 857, 1242
BseNI	ACTGG	2 cut(s)	374, 1008
BseRI	GAGGAG	2 cut(s)	235, 1424
BseSI	GKGCMC	1 cut(s)	920
BshFI	GGCC	4 cut(s)	950, 1202, 1340, 1367
BshNI	GGYRCC	1 cut(s)	1108
BsiHKAI	GWGCWC	2 cut(s)	353, 789
BsiHKCI	CYCGRG	1 cut(s)	664
BsiSI	CCGG	4 cut(s)	152, 172, 790, 1326
BslFI	GGGAC	4 cut(s)	177, 282, 608, 1444
BslI	CCNNNNNNNGG	4 cut(s)	171, 226, 1331, 1348
BsmAI	GTCTC	3 cut(s)	1079, 1206, 1460
BsmFI	GGGAC	4 cut(s)	177, 282, 608, 1444
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	4 cut(s)	950, 1202, 1340, 1367
Bso31I	GGTCTC	2 cut(s)	1206, 1460
BsoBI	CYCGRG	1 cut(s)	664
Bsp1286I	GDGCHC	3 cut(s)	353, 789, 920
Bsp1407I	TGTACA	1 cut(s)	1473
Bsp143I	GATC	4 cut(s)	364, 636, 825, 1231
BspACI	CCGC	5 cut(s)	160, 220, 418, 914, 1106
BspANI	GGCC	4 cut(s)	950, 1202, 1340, 1367
BspCNI	CTCAG	5 cut(s)	260, 446, 516, 856, 1243
BspLI	GGNNCC	5 cut(s)	193, 217, 596, 670, 1110
BspPI	GGATC	1 cut(s)	1226
BspT107I	GGYRCC	1 cut(s)	1108
BspTNI	GGTCTC	2 cut(s)	1206, 1460
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	1473
BsrI	ACTGG	2 cut(s)	374, 1008
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	150, 1324
BssMI	GATC	4 cut(s)	364, 636, 825, 1231
Bst4CI	ACNGT	3 cut(s)	191, 296, 397
Bst6I	CTCTTC	3 cut(s)	244, 575, 1095
BstAUI	TGTACA	1 cut(s)	1473
BstBAI	YACGTR	2 cut(s)	226, 1172
BstC8I	GCNNGC	4 cut(s)	349, 607, 916, 1321
BstDEI	CTNAG	8 cut(s)	247, 315, 433, 524, 843, 1030, 1053, 1251
BstF5I	GGATG	4 cut(s)	649, 970, 1012, 1234
BstKTI	GATC	4 cut(s)	367, 639, 828, 1234
BstMAI	GTCTC	3 cut(s)	1079, 1206, 1460
BstMBI	GATC	4 cut(s)	364, 636, 825, 1231
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 844
BstNSI	RCATGY	2 cut(s)	838, 1323
BstSCI	CCNGG	2 cut(s)	150, 1324
BstSLI	GKGCMC	1 cut(s)	920
BstV2I	GAAGAC	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	1110
BsuRI	GGCC	4 cut(s)	950, 1202, 1340, 1367
BtsCI	GGATG	4 cut(s)	649, 970, 1012, 1234
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	4 cut(s)	367, 393, 918, 939
Cac8I	GCNNGC	4 cut(s)	349, 607, 916, 1321
CaiI	CAGNNNCTG	1 cut(s)	860
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	6 cut(s)	154, 191, 595, 948, 1200, 1339
Csp6I	GTAC	3 cut(s)	328, 658, 1474
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviQI	GTAC	3 cut(s)	328, 658, 1474
DdeI	CTNAG	8 cut(s)	247, 315, 433, 524, 843, 1030, 1053, 1251
DpnI	GATC	4 cut(s)	366, 638, 827, 1233
DpnII	GATC	4 cut(s)	364, 636, 825, 1231
DraI	TTTAAA	1 cut(s)	70
Eam1104I	CTCTTC	3 cut(s)	244, 575, 1095
EarI	CTCTTC	3 cut(s)	244, 575, 1095
Ecl136II	GAGCTC	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	353
Eco31I	GGTCTC	2 cut(s)	1206, 1460
Eco47I	GGWCC	3 cut(s)	154, 191, 595
Eco53kI	GAGCTC	1 cut(s)	351
Eco57I	CTGAAG	2 cut(s)	789, 1446
Eco72I	CACGTG	1 cut(s)	1172
Eco88I	CYCGRG	1 cut(s)	664
EcoICRI	GAGCTC	1 cut(s)	351
EcoRI	GAATTC	1 cut(s)	683
EcoT22I	ATGCAT	1 cut(s)	1198
EcoT38I	GRGCYC	1 cut(s)	353
FaqI	GGGAC	4 cut(s)	177, 282, 608, 1444
FauI	CCCGC	2 cut(s)	227, 907
FblI	GTMKAC	2 cut(s)	6, 1035
Fnu4HI	GCNGC	2 cut(s)	418, 1107
FokI	GGATG	4 cut(s)	656, 957, 1019, 1241
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	418, 1107
FspBI	CTAG	2 cut(s)	993, 1454
GluI	GCNGC	2 cut(s)	418, 1107
HaeIII	GGCC	4 cut(s)	950, 1202, 1340, 1367
HapII	CCGG	4 cut(s)	152, 172, 790, 1326
HindIII	AAGCTT	3 cut(s)	473, 1055, 1240
HinfI	GANTC	5 cut(s)	851, 901, 1087, 1375, 1437
HpaII	CCGG	4 cut(s)	152, 172, 790, 1326
HphI	GGTGA	4 cut(s)	122, 259, 745, 1432
Hpy166II	GTNNAC	4 cut(s)	7, 157, 411, 1036
Hpy188I	TCNGA	9 cut(s)	120, 436, 443, 701, 777, 808, 856, 1084, 1138
Hpy188III	TCNNGA	5 cut(s)	310, 666, 974, 1022, 1235
Hpy8I	GTNNAC	4 cut(s)	7, 157, 411, 1036
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	9 cut(s)	114, 149, 175, 494, 559, 616, 724, 1308, 1421
HpyCH4III	ACNGT	3 cut(s)	191, 296, 397
HpyCH4IV	ACGT	7 cut(s)	79, 225, 385, 772, 1171, 1178, 1345
HpyCH4V	TGCA	6 cut(s)	76, 256, 769, 1133, 1146, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 844
HpyF3I	CTNAG	8 cut(s)	247, 315, 433, 524, 843, 1030, 1053, 1251
HpySE526I	ACGT	7 cut(s)	79, 225, 385, 772, 1171, 1178, 1345
Kzo9I	GATC	4 cut(s)	364, 636, 825, 1231
LmnI	GCTCC	4 cut(s)	312, 356, 471, 520
LweI	GCATC	2 cut(s)	997, 1142
MaeI	CTAG	2 cut(s)	993, 1454
MaeII	ACGT	7 cut(s)	79, 225, 385, 772, 1171, 1178, 1345
MaeIII	GTNAC	3 cut(s)	80, 934, 1172
MalI	GATC	4 cut(s)	366, 638, 827, 1233
MboI	GATC	4 cut(s)	364, 636, 825, 1231
MhlI	GDGCHC	3 cut(s)	353, 789, 920
MluCI	AATT	2 cut(s)	683, 1488
MlyI	GAGTC	3 cut(s)	860, 1081, 1431
Mph1103I	ATGCAT	1 cut(s)	1198
MroXI	GAANNNNTTC	1 cut(s)	626
MseI	TTAA	2 cut(s)	69, 1494
MslI	CAYNNNNRTG	2 cut(s)	38, 943
MspA1I	CMGCKG	2 cut(s)	251, 1106
MspI	CCGG	4 cut(s)	152, 172, 790, 1326
MspR9I	CCNGG	2 cut(s)	152, 1326
MssI	GTTTAAAC	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	472, 844
NciI	CCSGG	2 cut(s)	152, 1326
NdeII	GATC	4 cut(s)	364, 636, 825, 1231
NlaIV	GGNNCC	5 cut(s)	193, 217, 596, 670, 1110
NmuCI	GTSAC	2 cut(s)	934, 1172
NsiI	ATGCAT	1 cut(s)	1198
NspI	RCATGY	2 cut(s)	838, 1323
PaeI	GCATGC	1 cut(s)	1323
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	626
PfeI	GAWTC	2 cut(s)	901, 1375
PkrI	GCNGC	2 cut(s)	419, 1108
PleI	GAGTC	3 cut(s)	859, 1081, 1431
PmaCI	CACGTG	1 cut(s)	1172
PmeI	GTTTAAAC	1 cut(s)	70
PmlI	CACGTG	1 cut(s)	1172
PpsI	GAGTC	3 cut(s)	859, 1081, 1431
Ppu21I	YACGTR	2 cut(s)	226, 1172
Psp124BI	GAGCTC	1 cut(s)	353
Psp1406I	AACGTT	1 cut(s)	79
PspCI	CACGTG	1 cut(s)	1172
PspN4I	GGNNCC	5 cut(s)	193, 217, 596, 670, 1110
PspPI	GGNCC	6 cut(s)	154, 191, 595, 948, 1200, 1339
PstNI	CAGNNNCTG	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	3 cut(s)	329, 659, 1475
RsaNI	GTAC	3 cut(s)	328, 658, 1474
RseI	CAYNNNNRTG	2 cut(s)	38, 943
SacI	GAGCTC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	69, 1494
SatI	GCNGC	2 cut(s)	418, 1107
Sau3AI	GATC	4 cut(s)	364, 636, 825, 1231
Sau96I	GGNCC	6 cut(s)	154, 191, 595, 948, 1200, 1339
SchI	GAGTC	3 cut(s)	860, 1081, 1431
ScrFI	CCNGG	2 cut(s)	152, 1326
SduI	GDGCHC	3 cut(s)	353, 789, 920
SfaNI	GCATC	2 cut(s)	997, 1142
SinI	GGWCC	3 cut(s)	154, 191, 595
SmiMI	CAYNNNNRTG	2 cut(s)	38, 943
SpeI	ACTAGT	1 cut(s)	1453
SphI	GCATGC	1 cut(s)	1323
Sse9I	AATT	2 cut(s)	683, 1488
SsiI	CCGC	5 cut(s)	160, 220, 418, 914, 1106
SspI	AATATT	1 cut(s)	866
SspMI	CTAG	2 cut(s)	993, 1454
SstI	GAGCTC	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	150, 1324
TaaI	ACNGT	3 cut(s)	191, 296, 397
TaiI	ACGT	7 cut(s)	82, 228, 388, 775, 1174, 1181, 1348
TaqI	TCGA	4 cut(s)	382, 399, 828, 1093
TasI	AATT	2 cut(s)	683, 1488
TatI	WGTACW	1 cut(s)	1473
TauI	GCSGC	2 cut(s)	420, 1109
TfiI	GAWTC	2 cut(s)	901, 1375
Tru1I	TTAA	2 cut(s)	69, 1494
Tru9I	TTAA	2 cut(s)	69, 1494
TscAI	CASTG	4 cut(s)	374, 400, 925, 939
TseFI	GTSAC	2 cut(s)	934, 1172
Tsp45I	GTSAC	2 cut(s)	934, 1172
TspDTI	ATGAA	2 cut(s)	619, 676
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	4 cut(s)	374, 400, 925, 939
VpaK11BI	GGWCC	3 cut(s)	154, 191, 595
XapI	RAATTY	1 cut(s)	683
XceI	RCATGY	2 cut(s)	838, 1323
XmiI	GTMKAC	2 cut(s)	6, 1035
XmnI	GAANNNNTTC	1 cut(s)	626
XspI	CTAG	2 cut(s)	993, 1454
Zsp2I	ATGCAT	1 cut(s)	1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.