Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013827

Physical Location & Seq

Genomic Coordinates Forward (+)

40533984 .. 40535837

Gene Structure 1854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTGATGGGTCGTCCCATCCATCTATATTTCAGAAAATACATGGGCAGTCCTGCCTCATTTCTAAGCTTTCTCCCAACTTGAAGAGCAGAAACTATGGTTTAACTGGTGCTTATGCAAATGGAGGCTTGCAAGGCCCCTTGCTGCCAGCAGGCCAAAGCACTGCCCTTGCACAGCTCTCACTGAAAGGGGCAGCTGGTTTTGCTATTGATTTCCTTATGGGAGGTGTATCTGCTGCTGTTTCTAAAACAGCTGCTGCTCCAATTGAGCGTGTTAAACTACTAATCCAGAATCAGGATGAGATGATCAAGGCTGGTCGGCTTTCTCAACCATACAAGGGAATAACTGACTGCTTTGCCCGAACAATTAAGGATGAGGGTCTCATTTCTCTGTGGAGAGGAAATACTGCTAATGTTATCAGATACTTTCCTACCCAGGCCTTGAACTTTGCTTTCAAGGATTACTTCAAGAGGCTTTTCAACTTCAAGAAGGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAACCTGGCATCAGGTGGTGCTGCTGGTGCTTCATCTCTTCTGTTTGTTTATTCCTTGGACTTTGCTAGAACACGTTTGGCAAATGATGGTAAGGCTGCCAAAAAGGGTGGGGAGAGACAGTTTAATGGTTTGATTGATGTTTACAAGAAAACCCTAAAGTCTGATGGTATTGCTGGGCTGTATCGCGGATTTAATATCTCATGTGTTGGAATTATTGTGTATCGTGGGCTCTATTTTGGAATGTATGATTCTCTGAAACCTGTGGTTCTGGTGGGTAAGCTGGAGGATAATTTCTTTGCTAGTTTTTTGCTGGGATGGGGAATTACAATTGGAGCTGGATTGGCTTCATACCCAATTGACACAGTGCGCAGAAGAATGATGATGACCTCAGGAGAAGCAGTAAAATATAAAAACTCTTTGGATGCCTTTAAGCAAATCATCAAAAATGAGGGTGCTAAATCTCTATTCAAAGGTGCTGGAGCAAACATATTACGTGCTGTTGCGGGTGCTGGTGTGCTTGCTGGCTATGACAAGCTGCAAGTCATTGTTTTTGGCAAGAAGTATGGATCTGGTGGTGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

369

Amino Acids

39.61

Weight (kDa)

9.88

Isoelectric Point (pI)

20.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	67 - 163	9.9e-26	Mitochondrial carrier protein
Mito_carr	PF00153	171 - 263	3.8e-21	Mitochondrial carrier protein
Mito_carr	PF00153	271 - 359	1.9e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28390 AT4G28390
fragaria_vesca	FvH4_6g26500
malus_domestica	MD09G1244400.v1.1 MD17G1236400.v1.1
prunus_persica	Prupe.3G139400_v2.0.a1
pyrus_communis	pycom17g23950
rosa_chinensis	RchiOBHm_Chr2g0127661
rosa_laevigata	RLG00000018944
rosa_multiflora	Rmu_sc0021082.1_g000001 Rmu_ssc0000200.1_g000004
rosa_roxburghii	Rroxscaffold_2G00116690
rosa_rugosa	Rorug02G0271800 Rorug02G0271900 Rorug02G0272000
rosa_samantha	Rh2BG333100
rosa_wichuraiana	Rw2G026300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	893
AccII	CGCG	1 cut(s)	711
AciI	CCGC	2 cut(s)	711, 1028
AclWI	GGATC	1 cut(s)	1099
AfiI	CCNNNNNNNGG	2 cut(s)	295, 338
AflIII	ACRYGT	1 cut(s)	596
AgsI	TTSAA	7 cut(s)	85, 445, 457, 469, 481, 487, 994
AjnI	CCWGG	2 cut(s)	435, 528
AluBI	AGCT	7 cut(s)	70, 178, 197, 254, 805, 860, 1060
AluI	AGCT	7 cut(s)	70, 178, 197, 254, 805, 860, 1060
Alw26I	GTCTC	2 cut(s)	386, 634
AlwI	GGATC	1 cut(s)	1099
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	3 cut(s)	136, 154, 438
ApeKI	GCWGC	8 cut(s)	145, 194, 236, 254, 257, 545, 620, 1060
AspLEI	GCGC	1 cut(s)	894
AspS9I	GGNCC	1 cut(s)	137
AxyI	CCTNAGG	1 cut(s)	913
BanII	GRGCYC	1 cut(s)	756
BbvI	GCAGC	8 cut(s)	132, 206, 223, 241, 244, 532, 607, 1047
BccI	CCATC	7 cut(s)	2, 27, 31, 494, 605, 683, 834
BciT130I	CCWGG	2 cut(s)	437, 530
BclI	TGATCA	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	386, 634
BfaI	CTAG	2 cut(s)	591, 825
BisI	GCNGC	8 cut(s)	146, 195, 237, 255, 258, 546, 621, 1061
BlsI	GCNGC	8 cut(s)	147, 196, 238, 256, 259, 547, 622, 1062
Bme1390I	CCNGG	2 cut(s)	437, 530
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	139, 527
BmrFI	CCNGG	2 cut(s)	437, 530
BmsI	GCATC	2 cut(s)	542, 937
BpmI	CTGGAG	2 cut(s)	827, 1023
BsaAI	YACGTR	1 cut(s)	1019
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	435, 579
BsaXI	ACNNNNNCTCC	4 cut(s)	629, 659, 909, 939
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 338
Bse1I	ACTGG	2 cut(s)	112, 512
Bse21I	CCTNAGG	1 cut(s)	913
BseBI	CCWGG	2 cut(s)	437, 530
BseDI	CCNNGG	2 cut(s)	435, 579
BseGI	GGATG	5 cut(s)	19, 304, 379, 845, 952
BseLI	CCNNNNNNNGG	2 cut(s)	295, 338
BseMII	CTCAG	1 cut(s)	927
BseNI	ACTGG	2 cut(s)	112, 512
BseXI	GCAGC	8 cut(s)	132, 206, 223, 241, 244, 532, 607, 1047
BseYI	CCCAGC	3 cut(s)	521, 698, 835
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	3 cut(s)	138, 156, 440
BslI	CCNNNNNNNGG	2 cut(s)	295, 338
BsmAI	GTCTC	2 cut(s)	386, 634
BsnI	GGCC	3 cut(s)	138, 156, 440
Bso31I	GGTCTC	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	756
Bsp143I	GATC	2 cut(s)	306, 1091
BspACI	CCGC	2 cut(s)	711, 1028
BspANI	GGCC	3 cut(s)	138, 156, 440
BspCNI	CTCAG	1 cut(s)	926
BspFNI	CGCG	1 cut(s)	711
BspLI	GGNNCC	2 cut(s)	139, 527
BspPI	GGATC	1 cut(s)	1099
BspQI	GCTCTTC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	112, 512
BssECI	CCNNGG	2 cut(s)	435, 579
BssMI	GATC	2 cut(s)	306, 1091
BssT1I	CCWWGG	1 cut(s)	579
Bst2UI	CCWGG	2 cut(s)	437, 530
Bst4CI	ACNGT	2 cut(s)	645, 889
Bst6I	CTCTTC	2 cut(s)	80, 567
BstBAI	YACGTR	1 cut(s)	1019
BstC8I	GCNNGC	5 cut(s)	131, 150, 154, 1044, 1048
BstDEI	CTNAG	2 cut(s)	66, 913
BstF5I	GGATG	5 cut(s)	19, 304, 379, 845, 952
BstFNI	CGCG	1 cut(s)	711
BstHHI	GCGC	1 cut(s)	894
BstKTI	GATC	2 cut(s)	309, 1094
BstMAI	GTCTC	2 cut(s)	386, 634
BstMBI	GATC	2 cut(s)	306, 1091
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 203, 551, 866
BstNI	CCWGG	2 cut(s)	437, 530
BstSCI	CCNGG	2 cut(s)	435, 528
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	8 cut(s)	132, 206, 223, 241, 244, 532, 607, 1047
BstX2I	RGATCY	1 cut(s)	1091
BstYI	RGATCY	1 cut(s)	1091
Bsu36I	CCTNAGG	1 cut(s)	913
BsuRI	GGCC	3 cut(s)	138, 156, 440
BtsCI	GGATG	5 cut(s)	19, 304, 379, 845, 952
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	3 cut(s)	162, 182, 894
Cac8I	GCNNGC	5 cut(s)	131, 150, 154, 1044, 1048
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	894
Cfr13I	GGNCC	1 cut(s)	137
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	2 cut(s)	44, 726
DdeI	CTNAG	2 cut(s)	66, 913
DpnI	GATC	2 cut(s)	308, 1093
DpnII	GATC	2 cut(s)	306, 1091
Eam1104I	CTCTTC	2 cut(s)	80, 567
EarI	CTCTTC	2 cut(s)	80, 567
Eco130I	CCWWGG	1 cut(s)	579
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	756
Eco31I	GGTCTC	1 cut(s)	386
Eco81I	CCTNAGG	1 cut(s)	913
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	435, 528
EcoT14I	CCWWGG	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	756
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	2 cut(s)	47, 729
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	2 cut(s)	43, 725
FauI	CCCGC	1 cut(s)	1021
FbaI	TGATCA	1 cut(s)	306
Fnu4HI	GCNGC	8 cut(s)	146, 195, 237, 255, 258, 546, 621, 1061
FokI	GGATG	5 cut(s)	6, 311, 386, 852, 959
FriOI	GRGCYC	1 cut(s)	756
Fsp4HI	GCNGC	8 cut(s)	146, 195, 237, 255, 258, 546, 621, 1061
FspBI	CTAG	2 cut(s)	591, 825
FspI	TGCGCA	1 cut(s)	893
GlaI	GCGC	1 cut(s)	893
GluI	GCNGC	8 cut(s)	146, 195, 237, 255, 258, 546, 621, 1061
GsaI	CCCAGC	3 cut(s)	525, 702, 839
GsuI	CTGGAG	2 cut(s)	827, 1023
HaeIII	GGCC	3 cut(s)	138, 156, 440
HhaI	GCGC	1 cut(s)	894
Hin1II	CATG	2 cut(s)	47, 729
Hin6I	GCGC	1 cut(s)	892
HinP1I	GCGC	1 cut(s)	892
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	292, 773
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	4 cut(s)	36, 422, 688, 780
Hpy188III	TCNNGA	5 cut(s)	289, 296, 469, 487, 915
Hpy8I	GTNNAC	1 cut(s)	667
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	645, 889
HpyCH4IV	ACGT	2 cut(s)	598, 1018
HpyCH4V	TGCA	4 cut(s)	119, 133, 173, 1063
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 203, 551, 866
HpyF3I	CTNAG	2 cut(s)	66, 913
HpySE526I	ACGT	2 cut(s)	598, 1018
Hsp92II	CATG	2 cut(s)	47, 729
HspAI	GCGC	1 cut(s)	892
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	306, 1091
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	3 cut(s)	265, 857, 1004
Lsp1109I	GCAGC	8 cut(s)	132, 206, 223, 241, 244, 532, 607, 1047
LweI	GCATC	2 cut(s)	542, 937
MaeI	CTAG	2 cut(s)	591, 825
MaeII	ACGT	2 cut(s)	598, 1018
MalI	GATC	2 cut(s)	308, 1093
MboI	GATC	2 cut(s)	306, 1091
MboII	GAAGA	3 cut(s)	97, 554, 909
MfeI	CAATTG	3 cut(s)	264, 852, 879
MflI	RGATCY	1 cut(s)	1091
MhlI	GDGCHC	1 cut(s)	756
MluCI	AATT	7 cut(s)	264, 366, 735, 814, 846, 852, 879
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	9 cut(s)	68, 119, 218, 370, 392, 465, 802, 922, 967
MseI	TTAA	7 cut(s)	104, 276, 369, 648, 717, 954, 1108
MspA1I	CMGCKG	2 cut(s)	197, 254
MspR9I	CCNGG	2 cut(s)	437, 530
MunI	CAATTG	3 cut(s)	264, 852, 879
MvaI	CCWGG	2 cut(s)	437, 530
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	4 cut(s)	135, 203, 551, 866
NdeII	GATC	2 cut(s)	306, 1091
NlaIII	CATG	2 cut(s)	47, 729
NlaIV	GGNNCC	2 cut(s)	139, 527
NsbI	TGCGCA	1 cut(s)	893
PceI	AGGCCT	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	292, 773
PkrI	GCNGC	8 cut(s)	147, 196, 238, 256, 259, 547, 622, 1062
Ppu21I	YACGTR	1 cut(s)	1019
Psp6I	CCWGG	2 cut(s)	435, 528
PspFI	CCCAGC	3 cut(s)	521, 698, 835
PspGI	CCWGG	2 cut(s)	435, 528
PspN4I	GGNNCC	2 cut(s)	139, 527
PspPI	GGNCC	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	1091
PvuII	CAGCTG	2 cut(s)	197, 254
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	7 cut(s)	104, 276, 369, 648, 717, 954, 1108
SatI	GCNGC	8 cut(s)	146, 195, 237, 255, 258, 546, 621, 1061
Sau3AI	GATC	2 cut(s)	306, 1091
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	437, 530
SduI	GDGCHC	1 cut(s)	756
SfaNI	GCATC	2 cut(s)	542, 937
Sse9I	AATT	7 cut(s)	264, 366, 735, 814, 846, 852, 879
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	2 cut(s)	711, 1028
SspMI	CTAG	2 cut(s)	591, 825
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	435, 528
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	645, 889
TaiI	ACGT	2 cut(s)	601, 1021
TasI	AATT	7 cut(s)	264, 366, 735, 814, 846, 852, 879
TfiI	GAWTC	2 cut(s)	292, 773
Tru1I	TTAA	7 cut(s)	104, 276, 369, 648, 717, 954, 1108
Tru9I	TTAA	7 cut(s)	104, 276, 369, 648, 717, 954, 1108
TscAI	CASTG	3 cut(s)	169, 189, 894
TseI	GCWGC	8 cut(s)	145, 194, 236, 254, 257, 545, 620, 1060
TspDTI	ATGAA	2 cut(s)	546, 861
TspRI	CASTG	3 cut(s)	169, 189, 894
XspI	CTAG	2 cut(s)	591, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.