Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007520

Physical Location & Seq

Genomic Coordinates Reverse (-)

20929482 .. 20933207

Gene Structure 3726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27330.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAAAACCAGTTCCAGTTCAATCTCTCTCTCTCTCTCTCTCTCTCCCACTCTTGGAATTTGGAACCAACTCATTGTCAGAGGCGCACCCATTATCATGAGCTGCTGCGACTGCAATACAGAGACCCCAAAACCCAAGATTTTGGCCGTCATTCTCGATTTGGATGGGACCCTTTTGGACACAGAGCGGGCTACAAGGAGCGTCTTCACGGAGTTCTTGGCCAAGTATGGCAAGACTTTGAAGAAGGAGAGGGAAGAGAAGAGGGAGATTGGCAAGACACTCAAAGACTCGTCCACCGCCACTGTCGAGGACTATGATCTTCCATTGACTCCTGACCAGTTCATTGAAGAAATCATCCCCATGTATCAACAAAAGTGGAAGCACGCGAAAGCTCTTCCTGGTGCTACCCGTCTAATCAAGCATCTCCATGACCATGGAGTACCTACTGCTCTTGCTTCGAACTCCTTGCGCGAATATATAAATGCAAAGATCTCTGTCCATCAAGGTTGGCAGGGATGGTTTTCAGTAATCCTTGGCAGCGACCAGGTTAAAGCGGGCAAGCCCTCTCCAGATTTATTTGAAGAGGCAGCAAGACAGATGGATGTAGATGCAGCTAACTGCCTTGTGATCGAAGACTCGATGGTTGGCGTTAAAGCTGCCAATGCTGCCAGAATGGAGGTAGTCGCTGTTCCACCCCATGGTGAAGCTGCTGGTTGTTCTGCGCTTGCAAAGACTGTGCTTCATTCACTTTTGGAGTTTCGACCCGAGCATTGGGGTCTTCCTCCTTTTGAAGATTGGGTAGATAATGCATTGCCAATTGAAGCAATTTATTTGAGTGGTCTGTATGATAATGGGTTTGTCAATGAAGACACAGAGGATGGAAAATCGGCTCTGCCTGACCAAGTTTGGGGAGTCTTCTTTGGATGGGCTGTAGTGGATATGAAGAAGAGCTACAGGGTAGTGGTTGGCATTGGTATGGATCCAATTACCTGCTCTCCTAAGAAAAAGATTCAAATACATCTAGCTAACGGAGGCAATTGCTGTATATCCAACAAGAAAGTGAAATTGCTGCTTGTTGGCTACATCCGTGGACTAAATAGCAAGGAAGTTACATCTCTGGATGCAGAGTCACTCGAGGAATGTAAGTCCATAGCAAGTGCTGCACTGGATCTGCCAATATTCAGTCAGCATGCTTATGTTCCTCTGTACCCAGATACTTTTTCTGTCGAAGATATGGTTGCCACTGATGAGCTAGGACACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

422

Amino Acids

46.23

Weight (kDa)

5.37

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	49 - 223	4.2e-26	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	50 - 230	2.7e-27	Haloacid dehalogenase-like hydrolase
HAD	PF12710	50 - 194	7.3e-09	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330
malus_domestica	MD00G1176400.v1.1 MD17G1231100.v1.1
prunus_persica	Prupe.3G121200_v2.0.a1
pyrus_communis	pycom09g15700 pycom17g23430
rosa_chinensis	RchiOBHm_Chr2g0129511
rosa_laevigata	RLG00000019086
rosa_multiflora	Rmu_sc0000999.1_g000022
rosa_roxburghii	Rroxscaffold_2G00114550
rosa_rugosa	Rorug02G0287000
rosa_samantha	Rh2AG338700 Rh2BG347100 Rh2CG326100 Rh2DG365500
rosa_wichuraiana	Rw2G027900 Rw2G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	998
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccBSI	CCGCTC	1 cut(s)	187
AccII	CGCG	2 cut(s)	386, 471
AciI	CCGC	3 cut(s)	187, 297, 554
AclWI	GGATC	3 cut(s)	974, 987, 1176
AcoI	YGGCCR	2 cut(s)	144, 219
AcsI	RAATTY	1 cut(s)	57
AfaI	GTAC	2 cut(s)	441, 1208
AfiI	CCNNNNNNNGG	4 cut(s)	53, 698, 771, 907
AgsI	TTSAA	7 cut(s)	21, 241, 347, 581, 791, 821, 1013
AjnI	CCWGG	2 cut(s)	397, 543
AluBI	AGCT	8 cut(s)	102, 392, 614, 656, 707, 951, 1025, 1252
AluI	AGCT	8 cut(s)	102, 392, 614, 656, 707, 951, 1025, 1252
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	3 cut(s)	974, 987, 1176
Ama87I	CYCGRG	2 cut(s)	764, 1133
AoxI	GGCC	2 cut(s)	144, 219
ApoI	RAATTY	1 cut(s)	57
AspLEI	GCGC	3 cut(s)	86, 471, 724
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	713
AsuII	TTCGAA	1 cut(s)	458
AvaI	CYCGRG	2 cut(s)	764, 1133
AvaII	GGWCC	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	979
BarI	GAAGNNNNNNTAC	2 cut(s)	935, 967
BbsI	GAAGAC	5 cut(s)	196, 639, 770, 873, 907
BccI	CCATC	7 cut(s)	158, 507, 510, 592, 634, 872, 918
BceAI	ACGGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	448, 482
BciT130I	CCWGG	2 cut(s)	399, 545
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	1022, 1253
BfmI	CTRYAG	2 cut(s)	930, 952
BfuAI	ACCTGC	1 cut(s)	998
BglII	AGATCT	1 cut(s)	489
Bme1390I	CCNGG	2 cut(s)	399, 545
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	2 cut(s)	764, 1133
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	4 cut(s)	65, 169, 170, 981
BmrFI	CCNGG	2 cut(s)	399, 545
BmsI	GCATC	3 cut(s)	430, 598, 1111
BpiI	GAAGAC	5 cut(s)	196, 639, 770, 873, 907
BpmI	CTGGAG	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	4 cut(s)	433, 532, 697, 1087
BsaXI	ACNNNNNCTCC	2 cut(s)	979, 1009
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 698, 771, 907
Bse1I	ACTGG	4 cut(s)	9, 15, 337, 1170
Bse3DI	GCAATG	1 cut(s)	809
BseBI	CCWGG	2 cut(s)	399, 545
BseDI	CCNNGG	4 cut(s)	433, 532, 697, 1087
BseGI	GGATG	8 cut(s)	169, 354, 521, 607, 883, 929, 1083, 1126
BseLI	CCNNNNNNNGG	4 cut(s)	53, 698, 771, 907
BseMI	GCAATG	1 cut(s)	809
BseNI	ACTGG	4 cut(s)	9, 15, 337, 1170
BsgI	GTGCAG	1 cut(s)	1146
Bsh1236I	CGCG	2 cut(s)	386, 471
BshFI	GGCC	2 cut(s)	146, 221
BsiHKCI	CYCGRG	2 cut(s)	764, 1133
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	4 cut(s)	53, 698, 771, 907
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	146, 221
Bso31I	GGTCTC	1 cut(s)	116
BsoBI	CYCGRG	2 cut(s)	764, 1133
Bsp119I	TTCGAA	1 cut(s)	458
Bsp143I	GATC	5 cut(s)	316, 489, 627, 979, 1168
Bsp19I	CCATGG	2 cut(s)	433, 697
BspACI	CCGC	3 cut(s)	187, 297, 554
BspANI	GGCC	2 cut(s)	146, 221
BspFNI	CGCG	2 cut(s)	386, 471
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	4 cut(s)	65, 169, 170, 981
BspMI	ACCTGC	1 cut(s)	998
BspPI	GGATC	3 cut(s)	974, 987, 1176
BspQI	GCTCTTC	2 cut(s)	399, 941
BspT104I	TTCGAA	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	809
BsrI	ACTGG	4 cut(s)	9, 15, 337, 1170
BssECI	CCNNGG	4 cut(s)	433, 532, 697, 1087
BssMI	GATC	5 cut(s)	316, 489, 627, 979, 1168
BssT1I	CCWWGG	3 cut(s)	433, 532, 697
Bst2UI	CCWGG	2 cut(s)	399, 545
Bst4CI	ACNGT	2 cut(s)	304, 736
Bst6I	CTCTTC	5 cut(s)	249, 254, 399, 576, 941
BstAPI	GCANNNNNTGC	1 cut(s)	1160
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	6 cut(s)	189, 384, 556, 560, 726, 1191
BstDEI	CTNAG	1 cut(s)	999
BstDSI	CCRYGG	3 cut(s)	433, 697, 1087
BstF5I	GGATG	8 cut(s)	169, 354, 521, 607, 883, 929, 1083, 1126
BstFNI	CGCG	2 cut(s)	386, 471
BstHHI	GCGC	3 cut(s)	86, 471, 724
BstKTI	GATC	5 cut(s)	319, 492, 630, 982, 1171
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	5 cut(s)	316, 489, 627, 979, 1168
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 662, 665, 1160
BstNI	CCWGG	2 cut(s)	399, 545
BstNSI	RCATGY	1 cut(s)	1193
BstSCI	CCNGG	2 cut(s)	397, 543
BstSFI	CTRYAG	2 cut(s)	930, 952
BstUI	CGCG	2 cut(s)	386, 471
BstV2I	GAAGAC	5 cut(s)	196, 639, 770, 873, 907
BstX2I	RGATCY	3 cut(s)	489, 979, 1168
BstXI	CCANNNNNNTGG	2 cut(s)	142, 434
BstYI	RGATCY	3 cut(s)	489, 979, 1168
BsuRI	GGCC	2 cut(s)	146, 221
BtgI	CCRYGG	3 cut(s)	433, 697, 1087
BtsCI	GGATG	8 cut(s)	169, 354, 521, 607, 883, 929, 1083, 1126
BtsIMutI	CAGTG	3 cut(s)	300, 1163, 1242
BveI	ACCTGC	1 cut(s)	998
Cac8I	GCNNGC	6 cut(s)	189, 384, 556, 560, 726, 1191
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	3 cut(s)	86, 471, 724
Cfr13I	GGNCC	1 cut(s)	168
CseI	GACGC	1 cut(s)	190
CsiI	ACCWGGT	1 cut(s)	543
Csp6I	GTAC	2 cut(s)	440, 1207
CspCI	CAANNNNNGTGG	2 cut(s)	356, 391
CviAII	CATG	6 cut(s)	97, 361, 428, 434, 698, 1190
CviQI	GTAC	2 cut(s)	440, 1207
DdeI	CTNAG	1 cut(s)	999
DpnI	GATC	5 cut(s)	318, 491, 629, 981, 1170
DpnII	GATC	5 cut(s)	316, 489, 627, 979, 1168
EaeI	YGGCCR	2 cut(s)	144, 219
Eam1104I	CTCTTC	5 cut(s)	249, 254, 399, 576, 941
EarI	CTCTTC	5 cut(s)	249, 254, 399, 576, 941
Eco130I	CCWWGG	3 cut(s)	433, 532, 697
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	168
Eco88I	CYCGRG	2 cut(s)	764, 1133
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	397, 543
EcoT14I	CCWWGG	3 cut(s)	433, 532, 697
EcoT22I	ATGCAT	1 cut(s)	811
ErhI	CCWWGG	3 cut(s)	433, 532, 697
FaeI	CATG	6 cut(s)	100, 364, 431, 437, 701, 1193
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	6 cut(s)	96, 360, 427, 433, 697, 1189
FauI	CCCGC	2 cut(s)	180, 547
FokI	GGATG	8 cut(s)	176, 341, 528, 614, 890, 936, 1070, 1133
FspBI	CTAG	2 cut(s)	1022, 1253
GlaI	GCGC	3 cut(s)	85, 470, 723
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	146, 221
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	3 cut(s)	86, 471, 724
Hin1II	CATG	6 cut(s)	100, 364, 431, 437, 701, 1193
Hin6I	GCGC	3 cut(s)	84, 469, 722
HinP1I	GCGC	3 cut(s)	84, 469, 722
HinfI	GANTC	6 cut(s)	287, 328, 635, 912, 1009, 1127
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	2 cut(s)	294, 1091
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	5 cut(s)	97, 155, 332, 569, 1118
Hpy8I	GTNNAC	2 cut(s)	294, 1091
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	2 cut(s)	304, 736
HpyCH4V	TGCA	7 cut(s)	114, 485, 611, 728, 809, 1124, 1163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 662, 665, 1160
HpyF3I	CTNAG	1 cut(s)	999
Hsp92II	CATG	6 cut(s)	100, 364, 431, 437, 701, 1193
HspAI	GCGC	3 cut(s)	84, 469, 722
KflI	GGGWCCC	1 cut(s)	168
Kzo9I	GATC	5 cut(s)	316, 489, 627, 979, 1168
LguI	GCTCTTC	2 cut(s)	399, 941
LmnI	GCTCC	1 cut(s)	198
LweI	GCATC	3 cut(s)	430, 598, 1111
MabI	ACCWGGT	1 cut(s)	543
MaeI	CTAG	2 cut(s)	1022, 1253
MaeIII	GTNAC	2 cut(s)	1108, 1128
MalI	GATC	5 cut(s)	318, 491, 629, 981, 1170
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	5 cut(s)	316, 489, 627, 979, 1168
MfeI	CAATTG	2 cut(s)	816, 1036
MflI	RGATCY	3 cut(s)	489, 979, 1168
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	6 cut(s)	57, 816, 825, 984, 1036, 1064
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	5 cut(s)	281, 322, 629, 921, 1136
MmeI	TCCRAC	1 cut(s)	1074
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	811
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	2 cut(s)	549, 651
MslI	CAYNNNNRTG	6 cut(s)	95, 359, 426, 432, 974, 1194
Msp20I	TGGCCA	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	399, 545
MunI	CAATTG	2 cut(s)	816, 1036
MvaI	CCWGG	2 cut(s)	399, 545
MvnI	CGCG	2 cut(s)	386, 471
MwoI	GCNNNNNNNGC	4 cut(s)	111, 662, 665, 1160
NcoI	CCATGG	2 cut(s)	433, 697
NdeII	GATC	5 cut(s)	316, 489, 627, 979, 1168
NlaIII	CATG	6 cut(s)	100, 364, 431, 437, 701, 1193
NlaIV	GGNNCC	4 cut(s)	65, 169, 170, 981
NmuCI	GTSAC	1 cut(s)	1128
NsiI	ATGCAT	1 cut(s)	811
NspI	RCATGY	1 cut(s)	1193
NspV	TTCGAA	1 cut(s)	458
PaeI	GCATGC	1 cut(s)	1193
PaeR7I	CTCGAG	1 cut(s)	1133
PagI	TCATGA	1 cut(s)	96
PciSI	GCTCTTC	2 cut(s)	399, 941
PfeI	GAWTC	1 cut(s)	1009
PflMI	CCANNNNNTGG	1 cut(s)	698
PleI	GAGTC	5 cut(s)	281, 322, 629, 920, 1135
PpsI	GAGTC	5 cut(s)	281, 322, 629, 920, 1135
PpuMI	RGGWCCY	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	397, 543
PspGI	CCWGG	2 cut(s)	397, 543
PspN4I	GGNNCC	4 cut(s)	65, 169, 170, 981
PspPI	GGNCC	1 cut(s)	168
PspPPI	RGGWCCY	1 cut(s)	168
PspXI	VCTCGAGB	1 cut(s)	1133
PsrI	GAACNNNNNNTAC	2 cut(s)	672, 704
PsuI	RGATCY	3 cut(s)	489, 979, 1168
RsaI	GTAC	2 cut(s)	441, 1208
RsaNI	GTAC	2 cut(s)	440, 1207
RseI	CAYNNNNRTG	6 cut(s)	95, 359, 426, 432, 974, 1194
SapI	GCTCTTC	2 cut(s)	399, 941
SaqAI	TTAA	2 cut(s)	549, 651
Sau3AI	GATC	5 cut(s)	316, 489, 627, 979, 1168
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	5 cut(s)	281, 322, 629, 921, 1136
ScrFI	CCNGG	2 cut(s)	399, 545
SexAI	ACCWGGT	1 cut(s)	543
SfaNI	GCATC	3 cut(s)	430, 598, 1111
SfcI	CTRYAG	2 cut(s)	930, 952
Sfr274I	CTCGAG	1 cut(s)	1133
SfuI	TTCGAA	1 cut(s)	458
SinI	GGWCC	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	1133
SmiMI	CAYNNNNRTG	6 cut(s)	95, 359, 426, 432, 974, 1194
SmlI	CTYRAG	1 cut(s)	1133
SmoI	CTYRAG	1 cut(s)	1133
SphI	GCATGC	1 cut(s)	1193
Sse9I	AATT	6 cut(s)	57, 816, 825, 984, 1036, 1064
SsiI	CCGC	3 cut(s)	187, 297, 554
SspI	AATATT	1 cut(s)	1179
SspMI	CTAG	2 cut(s)	1022, 1253
StyD4I	CCNGG	2 cut(s)	397, 543
StyI	CCWWGG	3 cut(s)	433, 532, 697
TaaI	ACNGT	2 cut(s)	304, 736
TaqI	TCGA	8 cut(s)	156, 306, 458, 630, 638, 760, 1134, 1227
TasI	AATT	6 cut(s)	57, 816, 825, 984, 1036, 1064
TfiI	GAWTC	1 cut(s)	1009
Tru1I	TTAA	2 cut(s)	549, 651
Tru9I	TTAA	2 cut(s)	549, 651
TscAI	CASTG	3 cut(s)	307, 1170, 1249
TseFI	GTSAC	1 cut(s)	1128
Tsp45I	GTSAC	1 cut(s)	1128
TspDTI	ATGAA	5 cut(s)	17, 331, 731, 879, 956
TspGWI	ACGGA	3 cut(s)	224, 1044, 1076
TspRI	CASTG	3 cut(s)	307, 1170, 1249
Van91I	CCANNNNNTGG	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	57
XceI	RCATGY	1 cut(s)	1193
XhoI	CTCGAG	1 cut(s)	1133
XspI	CTAG	2 cut(s)	1022, 1253
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.