Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007520

Physical Location & Seq

Genomic Coordinates Forward (+)

40673509 .. 40676916

Gene Structure 3408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAGCTGCTGCGACTGTGCATCCAATCACTGCAATACAGAGACCCCAAAGCCCAAGATTTTGGGCGTCATTCTTGATTTGGATGGGACCCTTTTGGACACAGGGAAGAAGAGGGAGATTGGGAAGACACTCAAAGACTCGTCTACCGCCACTGTTGAGGACTATGATCTTCCATTGACTCCTGACCAGTTTATTGAAGAAATCATCCCCATGTATCAACAAAAGTGGAAGCACGCGAAAGCTCTTCCTGGTGCTACCCGTCTTATCAAACATCTCCATGACCATGGAGTACCTACTGCTCTTGCTTCAAATTCCTTGCGCGAATATATAAATGCAAAGATCTCTGTCCATCAAGGTTGGCAGGGATGGTTTTCAGTAATCCTTGGCAGTGACCAGGTTAAAGCGGGCAAGCCCTCTCCAGATTTATTTGAAGAGGCAGCAAGGCAGATGGATGTAGATGCAGTTCACTGCCTTGTGATCGAAGACTCGATGGTTGGCGTTAAAGCTGCCAATGCTGCCGGAATGGAGGTAGTGGCTGTTCCACCCCATGGTGAAGCTGCTGGTTGTTCTGCCCTTGCAAACACTGTGCTTCATTCACTTTTGGAGTTTCGACCTGAGCATTGGGGTCTTCCTCCTTTTGAAGATTGGGTAGATAATGCATTGCCAATTGAAGCAATTAATTTGAGTGGTCTTTATGTTAACGGGGTTTTCATTGAAGACACAGAGGATGGAAAATCTGCTCTGCCTGACCAAGTTTGGGGAGTTTTCTTTGGGTGGGCTGTGGTGGATATGCAGAAGAGCTACAGGGTAGTGGTTGGCATTGGAATGGATCACAATTCCTGCTGTCCTAAGAAAAAGACTCAAATACATCTAGTTAATGGAGGCAATTGCTGTACATCCAATCAGCAAGTGAAACTGCTGCTTGTTGGCTACATCTGCGGACTGAATAGCAAGGAAGTTTCATCTCTGGATGCAGAATCACTCGAGGAATGCAAGTCTATTGCAAGTGCTGCATTGGATCTGCCAATATTTAGTCAGCATGCTTATGTGCCTCTGTACCCAGATACTTTTTCTCTCGAAGACACGGTTGACACTTATGAGCTAGGACACTCTGATATGCAGACCTTTTCTTTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

379

Amino Acids

41.37

Weight (kDa)

4.92

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	39 - 180	2.4e-18	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	78 - 174	8.5e-19	haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	135 - 180	2.2e-06	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330
malus_domestica	MD00G1176400.v1.1 MD17G1231100.v1.1
prunus_persica	Prupe.3G121200_v2.0.a1
pyrus_communis	pycom09g15700 pycom17g23430
rosa_chinensis	RchiOBHm_Chr2g0129511
rosa_laevigata	RLG00000019086
rosa_multiflora	Rmu_sc0000999.1_g000022
rosa_roxburghii	Rroxscaffold_2G00114550
rosa_rugosa	Rorug02G0287000
rosa_samantha	Rh2AG338700 Rh2BG347100 Rh2CG326100 Rh2DG365500
rosa_wichuraiana	Rw2G027900 Rw2G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	143
AccII	CGCG	2 cut(s)	236, 321
AciI	CCGC	3 cut(s)	147, 404, 939
AclWI	GGATC	2 cut(s)	837, 1026
AcsI	RAATTY	1 cut(s)	310
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	3 cut(s)	291, 895, 1058
AfiI	CCNNNNNNNGG	2 cut(s)	548, 757
AgsI	TTSAA	6 cut(s)	197, 309, 431, 641, 671, 716
AjnI	CCWGG	2 cut(s)	247, 393
AluBI	AGCT	6 cut(s)	6, 242, 506, 557, 801, 1102
AluI	AGCT	6 cut(s)	6, 242, 506, 557, 801, 1102
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	837, 1026
Ama87I	CYCGRG	1 cut(s)	983
ApeKI	GCWGC	8 cut(s)	6, 9, 437, 506, 515, 557, 919, 1010
ApoI	RAATTY	1 cut(s)	310
AseI	ATTAAT	1 cut(s)	678
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	563
AvaI	CYCGRG	1 cut(s)	983
AvaII	GGWCC	1 cut(s)	87
BbsI	GAAGAC	5 cut(s)	131, 489, 620, 723, 1086
BbvI	GCAGC	6 cut(s)	449, 493, 502, 544, 906, 997
BccI	CCATC	6 cut(s)	77, 357, 360, 442, 484, 722
BciT130I	CCWGG	2 cut(s)	249, 395
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	872, 1103
BfmI	CTRYAG	1 cut(s)	802
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	8 cut(s)	7, 10, 438, 507, 516, 558, 920, 1011
BlsI	GCNGC	8 cut(s)	8, 11, 439, 508, 517, 559, 921, 1012
Bme1390I	CCNGG	2 cut(s)	249, 395
Bme18I	GGWCC	1 cut(s)	87
BmeT110I	CYCGRG	1 cut(s)	983
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	88, 89
BmrFI	CCNGG	2 cut(s)	249, 395
BmsI	GCATC	3 cut(s)	29, 448, 961
BpiI	GAAGAC	5 cut(s)	131, 489, 620, 723, 1086
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	283, 382, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	548, 757
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	659
BseBI	CCWGG	2 cut(s)	249, 395
BseDI	CCNNGG	3 cut(s)	283, 382, 547
BseGI	GGATG	8 cut(s)	20, 88, 204, 371, 457, 733, 896, 976
BseLI	CCNNNNNNNGG	2 cut(s)	548, 757
BseMI	GCAATG	1 cut(s)	659
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	6 cut(s)	449, 493, 502, 544, 906, 997
Bsh1236I	CGCG	2 cut(s)	236, 321
BsiHKCI	CYCGRG	1 cut(s)	983
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	548, 757
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	995
Bso31I	GGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	983
Bsp1407I	TGTACA	1 cut(s)	893
Bsp143I	GATC	5 cut(s)	166, 339, 477, 829, 1018
Bsp19I	CCATGG	2 cut(s)	283, 547
BspACI	CCGC	3 cut(s)	147, 404, 939
BspCNI	CTCAG	1 cut(s)	607
BspFNI	CGCG	2 cut(s)	236, 321
BspLI	GGNNCC	2 cut(s)	88, 89
BspPI	GGATC	2 cut(s)	837, 1026
BspQI	GCTCTTC	2 cut(s)	249, 791
BspTNI	GGTCTC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	659
BsrGI	TGTACA	1 cut(s)	893
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	283, 382, 547
BssMI	GATC	5 cut(s)	166, 339, 477, 829, 1018
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	3 cut(s)	283, 382, 547
Bst2UI	CCWGG	2 cut(s)	249, 395
Bst4CI	ACNGT	4 cut(s)	17, 154, 586, 1087
Bst6I	CTCTTC	4 cut(s)	104, 249, 426, 791
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	1010
BstAUI	TGTACA	1 cut(s)	893
BstC8I	GCNNGC	4 cut(s)	234, 406, 410, 1041
BstDEI	CTNAG	2 cut(s)	615, 849
BstDSI	CCRYGG	2 cut(s)	283, 547
BstF5I	GGATG	8 cut(s)	20, 88, 204, 371, 457, 733, 896, 976
BstFNI	CGCG	2 cut(s)	236, 321
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	5 cut(s)	169, 342, 480, 832, 1021
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	5 cut(s)	166, 339, 477, 829, 1018
BstMWI	GCNNNNNNNGC	4 cut(s)	512, 515, 936, 1010
BstNI	CCWGG	2 cut(s)	249, 395
BstNSI	RCATGY	1 cut(s)	1043
BstSCI	CCNGG	2 cut(s)	247, 393
BstSFI	CTRYAG	1 cut(s)	802
BstUI	CGCG	2 cut(s)	236, 321
BstV1I	GCAGC	6 cut(s)	449, 493, 502, 544, 906, 997
BstV2I	GAAGAC	5 cut(s)	131, 489, 620, 723, 1086
BstX2I	RGATCY	2 cut(s)	339, 1018
BstXI	CCANNNNNNTGG	2 cut(s)	61, 284
BstYI	RGATCY	2 cut(s)	339, 1018
BtgI	CCRYGG	2 cut(s)	283, 547
BtsCI	GGATG	8 cut(s)	20, 88, 204, 371, 457, 733, 896, 976
BtsI	GCAGTG	3 cut(s)	28, 394, 466
BtsIMutI	CAGTG	5 cut(s)	28, 150, 394, 466, 582
Cac8I	GCNNGC	4 cut(s)	234, 406, 410, 1041
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	87
CseI	GACGC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	290, 894, 1057
CspCI	CAANNNNNGTGG	2 cut(s)	206, 241
CviAII	CATG	5 cut(s)	211, 278, 284, 548, 1040
CviQI	GTAC	3 cut(s)	290, 894, 1057
DdeI	CTNAG	2 cut(s)	615, 849
DpnI	GATC	5 cut(s)	168, 341, 479, 831, 1020
DpnII	GATC	5 cut(s)	166, 339, 477, 829, 1018
Eam1104I	CTCTTC	4 cut(s)	104, 249, 426, 791
EarI	CTCTTC	4 cut(s)	104, 249, 426, 791
Eco130I	CCWWGG	3 cut(s)	283, 382, 547
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	983
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRII	CCWGG	2 cut(s)	247, 393
EcoT14I	CCWWGG	3 cut(s)	283, 382, 547
EcoT22I	ATGCAT	1 cut(s)	661
ErhI	CCWWGG	3 cut(s)	283, 382, 547
FaeI	CATG	5 cut(s)	214, 281, 287, 551, 1043
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	5 cut(s)	210, 277, 283, 547, 1039
FauI	CCCGC	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	8 cut(s)	7, 10, 438, 507, 516, 558, 920, 1011
FokI	GGATG	8 cut(s)	7, 95, 191, 378, 464, 740, 883, 983
Fsp4HI	GCNGC	8 cut(s)	7, 10, 438, 507, 516, 558, 920, 1011
FspBI	CTAG	2 cut(s)	872, 1103
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	8 cut(s)	7, 10, 438, 507, 516, 558, 920, 1011
GsuI	CTGGAG	1 cut(s)	402
HapII	CCGG	1 cut(s)	519
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	5 cut(s)	214, 281, 287, 551, 1043
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	2 cut(s)	700, 1090
HindII	GTYRAC	2 cut(s)	700, 1090
HinfI	GANTC	5 cut(s)	137, 178, 485, 859, 977
HpaI	GTTAAC	1 cut(s)	700
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	4 cut(s)	144, 466, 700, 1090
Hpy188I	TCNGA	1 cut(s)	1114
Hpy188III	TCNNGA	5 cut(s)	74, 182, 419, 968, 1076
Hpy8I	GTNNAC	4 cut(s)	144, 466, 700, 1090
HpyCH4III	ACNGT	4 cut(s)	17, 154, 586, 1087
HpyF10VI	GCNNNNNNNGC	4 cut(s)	512, 515, 936, 1010
HpyF3I	CTNAG	2 cut(s)	615, 849
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	5 cut(s)	214, 281, 287, 551, 1043
HspAI	GCGC	1 cut(s)	319
KflI	GGGWCCC	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	700
Kzo9I	GATC	5 cut(s)	166, 339, 477, 829, 1018
LguI	GCTCTTC	2 cut(s)	249, 791
Lsp1109I	GCAGC	6 cut(s)	449, 493, 502, 544, 906, 997
LweI	GCATC	3 cut(s)	29, 448, 961
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	2 cut(s)	872, 1103
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	5 cut(s)	168, 341, 479, 831, 1020
MboI	GATC	5 cut(s)	166, 339, 477, 829, 1018
MfeI	CAATTG	2 cut(s)	666, 886
MflI	RGATCY	2 cut(s)	339, 1018
MluCI	AATT	6 cut(s)	310, 666, 675, 679, 835, 886
MlyI	GAGTC	4 cut(s)	131, 172, 479, 853
Mph1103I	ATGCAT	1 cut(s)	661
MseI	TTAA	6 cut(s)	399, 501, 678, 699, 876, 1138
MslI	CAYNNNNRTG	5 cut(s)	209, 276, 282, 824, 1044
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	2 cut(s)	249, 395
MunI	CAATTG	2 cut(s)	666, 886
Mva1269I	GAATGC	1 cut(s)	995
MvaI	CCWGG	2 cut(s)	249, 395
MvnI	CGCG	2 cut(s)	236, 321
MwoI	GCNNNNNNNGC	4 cut(s)	512, 515, 936, 1010
NcoI	CCATGG	2 cut(s)	283, 547
NdeII	GATC	5 cut(s)	166, 339, 477, 829, 1018
NlaIII	CATG	5 cut(s)	214, 281, 287, 551, 1043
NlaIV	GGNNCC	2 cut(s)	88, 89
NmuCI	GTSAC	1 cut(s)	389
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	1 cut(s)	1043
PaeI	GCATGC	1 cut(s)	1043
PaeR7I	CTCGAG	1 cut(s)	983
PciSI	GCTCTTC	2 cut(s)	249, 791
PctI	GAATGC	1 cut(s)	995
PfeI	GAWTC	1 cut(s)	977
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	8 cut(s)	8, 11, 439, 508, 517, 559, 921, 1012
PleI	GAGTC	4 cut(s)	131, 172, 479, 853
PpsI	GAGTC	4 cut(s)	131, 172, 479, 853
PpuMI	RGGWCCY	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	247, 393
PspGI	CCWGG	2 cut(s)	247, 393
PspN4I	GGNNCC	2 cut(s)	88, 89
PspPI	GGNCC	1 cut(s)	87
PspPPI	RGGWCCY	1 cut(s)	87
PspXI	VCTCGAGB	1 cut(s)	983
PsrI	GAACNNNNNNTAC	4 cut(s)	447, 479, 522, 554
PsuI	RGATCY	2 cut(s)	339, 1018
RsaI	GTAC	3 cut(s)	291, 895, 1058
RsaNI	GTAC	3 cut(s)	290, 894, 1057
RseI	CAYNNNNRTG	5 cut(s)	209, 276, 282, 824, 1044
SapI	GCTCTTC	2 cut(s)	249, 791
SaqAI	TTAA	6 cut(s)	399, 501, 678, 699, 876, 1138
SatI	GCNGC	8 cut(s)	7, 10, 438, 507, 516, 558, 920, 1011
Sau3AI	GATC	5 cut(s)	166, 339, 477, 829, 1018
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	4 cut(s)	131, 172, 479, 853
ScrFI	CCNGG	2 cut(s)	249, 395
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	3 cut(s)	29, 448, 961
SfcI	CTRYAG	1 cut(s)	802
Sfr274I	CTCGAG	1 cut(s)	983
SinI	GGWCC	1 cut(s)	87
SlaI	CTCGAG	1 cut(s)	983
SmiMI	CAYNNNNRTG	5 cut(s)	209, 276, 282, 824, 1044
SmlI	CTYRAG	1 cut(s)	983
SmoI	CTYRAG	1 cut(s)	983
SphI	GCATGC	1 cut(s)	1043
Sse9I	AATT	6 cut(s)	310, 666, 675, 679, 835, 886
SsiI	CCGC	3 cut(s)	147, 404, 939
SspI	AATATT	1 cut(s)	1029
SspMI	CTAG	2 cut(s)	872, 1103
StyD4I	CCNGG	2 cut(s)	247, 393
StyI	CCWWGG	3 cut(s)	283, 382, 547
TaaI	ACNGT	4 cut(s)	17, 154, 586, 1087
TaqI	TCGA	5 cut(s)	480, 488, 610, 984, 1077
TasI	AATT	6 cut(s)	310, 666, 675, 679, 835, 886
TatI	WGTACW	1 cut(s)	893
TfiI	GAWTC	1 cut(s)	977
Tru1I	TTAA	6 cut(s)	399, 501, 678, 699, 876, 1138
Tru9I	TTAA	6 cut(s)	399, 501, 678, 699, 876, 1138
TscAI	CASTG	5 cut(s)	35, 157, 394, 473, 589
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	8 cut(s)	6, 9, 437, 506, 515, 557, 919, 1010
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	3 cut(s)	581, 700, 951
TspRI	CASTG	5 cut(s)	35, 157, 394, 473, 589
Van91I	CCANNNNNTGG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	87
VspI	ATTAAT	1 cut(s)	678
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	1043
XhoI	CTCGAG	1 cut(s)	983
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	2 cut(s)	872, 1103
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.