Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000999.1

Orthogroup ID

OG0007520

Physical Location & Seq

Genomic Coordinates Reverse (-)

73011 .. 76199

Gene Structure 3189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000999.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgagctgctgcgactgtgcatccaatcactgcaatacagagaccccaaaacccaagattttggccgtcattcttgatttggatgggacccttttggacacagagcgggctacaaagagcgtcttcaaggagtttttggccaagtatggcaagacattgaataaggaaagggaagagaagagggagattgggaagacactcaaagactcgtctaccgctactgttgaggactatgatcttccattgactcctgaccagtttattgaagaaatcatccccatgtatcaacaaaagtggaagcacgcgaaagctcttcctggtgctacccgtcttatcaaacatctccatgaccatggagtacctactgctctagcttcaaattccttgcgcgaatatataaatgcaaagatctctgtccatcaaggttggcagggatggttttcagtaatccttggcagtgaccaggttaaagcgggcaagccctctccagatttatttgaagaggcagcaaggcagatggatgtagatgcagctcactgccttgtgatcgaagactcgatggttggcgttaaagctgccaatgctgccggaatggaggtagtggctgttccaccccatggtgaagctgctggttgttctgcccttgcaaacactgtgctccattcacttttggagtttcgacctgagcattggggtcttcctccttttgaagattgggtagataatgcattgccaattgaagcaattaatttgagtggtctttatgttaacgggtttgtcattgaagacacagaggatgggaaatctgctctgcctgaccaagtttggggagttttctttgggtgggctgtggtggatatgcagaagagctacagggtagtggttggcattggaatggatcacaattcctgctgtcctaagaaaaagactcaaatacatctagttaatggaggcaattgctgtatatccaatcagcaagtgaaactgctgcttgttggatacatctgcggactgaatagcaaggaagtttcatctctggatgcagaatcactcgaggaatgcaagtctattgcaagtgctgcattggatctaccaatatttagtcagcatgtttatgtgcctctctacccagatactttctctctcgaagacatggttgacactgatgagctaggacactactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

394

Amino Acids

43.3

Weight (kDa)

5.03

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330
malus_domestica	MD00G1176400.v1.1 MD17G1231100.v1.1
prunus_persica	Prupe.3G121200_v2.0.a1
pyrus_communis	pycom09g15700 pycom17g23430
rosa_chinensis	RchiOBHm_Chr2g0129511
rosa_laevigata	RLG00000019086
rosa_multiflora	Rmu_sc0000999.1_g000022
rosa_roxburghii	Rroxscaffold_2G00114550
rosa_rugosa	Rorug02G0287000
rosa_samantha	Rh2AG338700 Rh2BG347100 Rh2CG326100 Rh2DG365500
rosa_wichuraiana	Rw2G027900 Rw2G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccBSI	CCGCTC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	2 cut(s)	305, 390
AciI	CCGC	4 cut(s)	106, 216, 473, 1008
AclWI	GGATC	2 cut(s)	906, 1095
AcoI	YGGCCR	2 cut(s)	63, 138
AcsI	RAATTY	1 cut(s)	379
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	617, 826
AgsI	TTSAA	8 cut(s)	127, 160, 266, 378, 500, 710, 740, 785
AjnI	CCWGG	2 cut(s)	316, 462
AluBI	AGCT	8 cut(s)	6, 311, 374, 533, 575, 626, 870, 1171
AluI	AGCT	8 cut(s)	6, 311, 374, 533, 575, 626, 870, 1171
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	906, 1095
Ama87I	CYCGRG	1 cut(s)	1052
AoxI	GGCC	2 cut(s)	63, 138
ApeKI	GCWGC	9 cut(s)	6, 9, 506, 530, 575, 584, 626, 988, 1079
ApoI	RAATTY	1 cut(s)	379
AseI	ATTAAT	1 cut(s)	747
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	632
AvaI	CYCGRG	1 cut(s)	1052
AvaII	GGWCC	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	140
BbsI	GAAGAC	6 cut(s)	115, 200, 558, 689, 792, 1155
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	7 cut(s)	518, 542, 562, 571, 613, 975, 1066
BccI	CCATC	6 cut(s)	77, 426, 429, 511, 553, 791
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	318, 464
BciVI	GTATCC	1 cut(s)	992
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	3 cut(s)	371, 941, 1172
BfmI	CTRYAG	1 cut(s)	871
BfuI	GTATCC	1 cut(s)	992
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	9 cut(s)	7, 10, 507, 531, 576, 585, 627, 989, 1080
BlsI	GCNGC	9 cut(s)	8, 11, 508, 532, 577, 586, 628, 990, 1081
Bme1390I	CCNGG	2 cut(s)	318, 464
Bme18I	GGWCC	1 cut(s)	87
BmeT110I	CYCGRG	1 cut(s)	1052
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	88, 89
BmrFI	CCNGG	2 cut(s)	318, 464
BmsI	GCATC	3 cut(s)	29, 517, 1030
BpiI	GAAGAC	6 cut(s)	115, 200, 558, 689, 792, 1155
BpmI	CTGGAG	1 cut(s)	471
Bpu10I	CCTNAGC	1 cut(s)	684
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	352, 451, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 826
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	728
BseBI	CCWGG	2 cut(s)	318, 464
BseDI	CCNNGG	3 cut(s)	352, 451, 616
BseGI	GGATG	7 cut(s)	20, 88, 273, 440, 526, 802, 1045
BseLI	CCNNNNNNNGG	2 cut(s)	617, 826
BseMI	GCAATG	1 cut(s)	728
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	7 cut(s)	518, 542, 562, 571, 613, 975, 1066
Bsh1236I	CGCG	2 cut(s)	305, 390
BshFI	GGCC	2 cut(s)	65, 140
BsiHKAI	GWGCWC	1 cut(s)	660
BsiHKCI	CYCGRG	1 cut(s)	1052
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	617, 826
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	1064
BsnI	GGCC	2 cut(s)	65, 140
Bso31I	GGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	1052
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp143I	GATC	5 cut(s)	235, 408, 546, 898, 1087
Bsp19I	CCATGG	2 cut(s)	352, 616
BspACI	CCGC	4 cut(s)	106, 216, 473, 1008
BspANI	GGCC	2 cut(s)	65, 140
BspCNI	CTCAG	1 cut(s)	676
BspFNI	CGCG	2 cut(s)	305, 390
BspLI	GGNNCC	2 cut(s)	88, 89
BspPI	GGATC	2 cut(s)	906, 1095
BspQI	GCTCTTC	2 cut(s)	318, 860
BspTNI	GGTCTC	1 cut(s)	35
BsrBI	CCGCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	3 cut(s)	352, 451, 616
BssMI	GATC	5 cut(s)	235, 408, 546, 898, 1087
BssT1I	CCWWGG	3 cut(s)	352, 451, 616
Bst2UI	CCWGG	2 cut(s)	318, 464
Bst4CI	ACNGT	3 cut(s)	17, 223, 655
Bst6I	CTCTTC	5 cut(s)	168, 173, 318, 495, 860
BstAPI	GCANNNNNTGC	1 cut(s)	1079
BstC8I	GCNNGC	4 cut(s)	108, 303, 475, 479
BstDEI	CTNAG	2 cut(s)	684, 918
BstDSI	CCRYGG	2 cut(s)	352, 616
BstF5I	GGATG	7 cut(s)	20, 88, 273, 440, 526, 802, 1045
BstFNI	CGCG	2 cut(s)	305, 390
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	5 cut(s)	238, 411, 549, 901, 1090
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	5 cut(s)	235, 408, 546, 898, 1087
BstMWI	GCNNNNNNNGC	3 cut(s)	581, 584, 1079
BstNI	CCWGG	2 cut(s)	318, 464
BstNSI	RCATGY	1 cut(s)	1112
BstSCI	CCNGG	2 cut(s)	316, 462
BstSFI	CTRYAG	1 cut(s)	871
BstUI	CGCG	2 cut(s)	305, 390
BstV1I	GCAGC	7 cut(s)	518, 542, 562, 571, 613, 975, 1066
BstV2I	GAAGAC	6 cut(s)	115, 200, 558, 689, 792, 1155
BstX2I	RGATCY	2 cut(s)	408, 1087
BstXI	CCANNNNNNTGG	2 cut(s)	61, 353
BstYI	RGATCY	2 cut(s)	408, 1087
BsuI	GTATCC	1 cut(s)	992
BsuRI	GGCC	2 cut(s)	65, 140
BtgI	CCRYGG	2 cut(s)	352, 616
BtsCI	GGATG	7 cut(s)	20, 88, 273, 440, 526, 802, 1045
BtsI	GCAGTG	3 cut(s)	28, 463, 535
BtsIMutI	CAGTG	5 cut(s)	28, 463, 535, 651, 1161
Cac8I	GCNNGC	4 cut(s)	108, 303, 475, 479
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	87
CseI	GACGC	1 cut(s)	109
CsiI	ACCWGGT	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	359
CspCI	CAANNNNNGTGG	2 cut(s)	275, 310
CviAII	CATG	6 cut(s)	280, 347, 353, 617, 1109, 1153
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	2 cut(s)	684, 918
DpnI	GATC	5 cut(s)	237, 410, 548, 900, 1089
DpnII	GATC	5 cut(s)	235, 408, 546, 898, 1087
EaeI	YGGCCR	2 cut(s)	63, 138
Eam1104I	CTCTTC	5 cut(s)	168, 173, 318, 495, 860
EarI	CTCTTC	5 cut(s)	168, 173, 318, 495, 860
Eco130I	CCWWGG	3 cut(s)	352, 451, 616
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	1052
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRII	CCWGG	2 cut(s)	316, 462
EcoT14I	CCWWGG	3 cut(s)	352, 451, 616
EcoT22I	ATGCAT	1 cut(s)	730
ErhI	CCWWGG	3 cut(s)	352, 451, 616
FaeI	CATG	6 cut(s)	283, 350, 356, 620, 1112, 1156
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	6 cut(s)	279, 346, 352, 616, 1108, 1152
FauI	CCCGC	2 cut(s)	99, 466
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	9 cut(s)	7, 10, 507, 531, 576, 585, 627, 989, 1080
FokI	GGATG	7 cut(s)	7, 95, 260, 447, 533, 809, 1052
Fsp4HI	GCNGC	9 cut(s)	7, 10, 507, 531, 576, 585, 627, 989, 1080
FspBI	CTAG	3 cut(s)	371, 941, 1172
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	9 cut(s)	7, 10, 507, 531, 576, 585, 627, 989, 1080
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	65, 140
HapII	CCGG	1 cut(s)	588
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	6 cut(s)	283, 350, 356, 620, 1112, 1156
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	2 cut(s)	769, 1159
HindII	GTYRAC	2 cut(s)	769, 1159
HinfI	GANTC	5 cut(s)	206, 247, 554, 928, 1046
HpaI	GTTAAC	1 cut(s)	769
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	3 cut(s)	213, 769, 1159
Hpy188III	TCNNGA	5 cut(s)	74, 251, 488, 1037, 1145
Hpy8I	GTNNAC	3 cut(s)	213, 769, 1159
HpyCH4III	ACNGT	3 cut(s)	17, 223, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	581, 584, 1079
HpyF3I	CTNAG	2 cut(s)	684, 918
Hsp92II	CATG	6 cut(s)	283, 350, 356, 620, 1112, 1156
HspAI	GCGC	1 cut(s)	388
KflI	GGGWCCC	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	769
Kzo9I	GATC	5 cut(s)	235, 408, 546, 898, 1087
LguI	GCTCTTC	2 cut(s)	318, 860
LmnI	GCTCC	1 cut(s)	663
Lsp1109I	GCAGC	7 cut(s)	518, 542, 562, 571, 613, 975, 1066
LweI	GCATC	3 cut(s)	29, 517, 1030
MabI	ACCWGGT	1 cut(s)	462
MaeI	CTAG	3 cut(s)	371, 941, 1172
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	5 cut(s)	237, 410, 548, 900, 1089
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	5 cut(s)	235, 408, 546, 898, 1087
MfeI	CAATTG	2 cut(s)	735, 955
MflI	RGATCY	2 cut(s)	408, 1087
MhlI	GDGCHC	1 cut(s)	660
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	6 cut(s)	379, 735, 744, 748, 904, 955
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	4 cut(s)	200, 241, 548, 922
MmeI	TCCRAC	1 cut(s)	976
Mox20I	TGGCCA	1 cut(s)	140
Mph1103I	ATGCAT	1 cut(s)	730
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	5 cut(s)	468, 570, 747, 768, 945
MslI	CAYNNNNRTG	5 cut(s)	278, 345, 351, 893, 1113
Msp20I	TGGCCA	1 cut(s)	140
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	2 cut(s)	318, 464
MunI	CAATTG	2 cut(s)	735, 955
Mva1269I	GAATGC	1 cut(s)	1064
MvaI	CCWGG	2 cut(s)	318, 464
MvnI	CGCG	2 cut(s)	305, 390
MwoI	GCNNNNNNNGC	3 cut(s)	581, 584, 1079
NcoI	CCATGG	2 cut(s)	352, 616
NdeII	GATC	5 cut(s)	235, 408, 546, 898, 1087
NlaIII	CATG	6 cut(s)	283, 350, 356, 620, 1112, 1156
NlaIV	GGNNCC	2 cut(s)	88, 89
NmuCI	GTSAC	1 cut(s)	458
NsiI	ATGCAT	1 cut(s)	730
NspI	RCATGY	1 cut(s)	1112
PaeR7I	CTCGAG	1 cut(s)	1052
PciSI	GCTCTTC	2 cut(s)	318, 860
PctI	GAATGC	1 cut(s)	1064
PfeI	GAWTC	1 cut(s)	1046
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	9 cut(s)	8, 11, 508, 532, 577, 586, 628, 990, 1081
PleI	GAGTC	4 cut(s)	200, 241, 548, 922
PpsI	GAGTC	4 cut(s)	200, 241, 548, 922
PpuMI	RGGWCCY	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	316, 462
PspGI	CCWGG	2 cut(s)	316, 462
PspN4I	GGNNCC	2 cut(s)	88, 89
PspPI	GGNCC	1 cut(s)	87
PspPPI	RGGWCCY	1 cut(s)	87
PspXI	VCTCGAGB	1 cut(s)	1052
PsrI	GAACNNNNNNTAC	2 cut(s)	591, 623
PsuI	RGATCY	2 cut(s)	408, 1087
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	5 cut(s)	278, 345, 351, 893, 1113
SapI	GCTCTTC	2 cut(s)	318, 860
SaqAI	TTAA	5 cut(s)	468, 570, 747, 768, 945
SatI	GCNGC	9 cut(s)	7, 10, 507, 531, 576, 585, 627, 989, 1080
Sau3AI	GATC	5 cut(s)	235, 408, 546, 898, 1087
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	4 cut(s)	200, 241, 548, 922
ScrFI	CCNGG	2 cut(s)	318, 464
SduI	GDGCHC	1 cut(s)	660
SexAI	ACCWGGT	1 cut(s)	462
SfaNI	GCATC	3 cut(s)	29, 517, 1030
SfcI	CTRYAG	1 cut(s)	871
Sfr274I	CTCGAG	1 cut(s)	1052
SinI	GGWCC	1 cut(s)	87
SlaI	CTCGAG	1 cut(s)	1052
SmiMI	CAYNNNNRTG	5 cut(s)	278, 345, 351, 893, 1113
SmlI	CTYRAG	1 cut(s)	1052
SmoI	CTYRAG	1 cut(s)	1052
Sse9I	AATT	6 cut(s)	379, 735, 744, 748, 904, 955
SsiI	CCGC	4 cut(s)	106, 216, 473, 1008
SspI	AATATT	1 cut(s)	1098
SspMI	CTAG	3 cut(s)	371, 941, 1172
StyD4I	CCNGG	2 cut(s)	316, 462
StyI	CCWWGG	3 cut(s)	352, 451, 616
TaaI	ACNGT	3 cut(s)	17, 223, 655
TaqI	TCGA	5 cut(s)	549, 557, 679, 1053, 1146
TasI	AATT	6 cut(s)	379, 735, 744, 748, 904, 955
TfiI	GAWTC	1 cut(s)	1046
Tru1I	TTAA	5 cut(s)	468, 570, 747, 768, 945
Tru9I	TTAA	5 cut(s)	468, 570, 747, 768, 945
TscAI	CASTG	5 cut(s)	35, 463, 542, 658, 1168
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	9 cut(s)	6, 9, 506, 530, 575, 584, 626, 988, 1079
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	1 cut(s)	1020
TspRI	CASTG	5 cut(s)	35, 463, 542, 658, 1168
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	87
VspI	ATTAAT	1 cut(s)	747
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	1112
XhoI	CTCGAG	1 cut(s)	1052
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	3 cut(s)	371, 941, 1172
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.