Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007520

Physical Location & Seq

Genomic Coordinates Forward (+)

15778717 .. 15781662

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15700.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAACTGCTGTGGGTGCGAGTGCAACAATGCAGCCGCAGAAACCCCAAAACCCAAGATTTTGGCTGTTATTTTTGATTTGGATGGCACCCTTTTGGACACAGAGCGGGCAACAAAGGGCGTGTTCGAGGAATTCTTGGCCCGCCATGGCAAAGTTTTGGACACAGAAAGGGAGGAGAAGAAGAGGTTGGGGATGACACTCAAAGACTCGGCAGCTTCGGTTATTGAGGACTATCATCTTCCATTCACCCCTGATCAGTTTGTCCAACAAATCATCCCCATGTACCAAGAAAAGTGGATGTACGCGAAAGCTCTACCTGGTGCTAATCGCCTTATCAAACACTTCCATGACCATGGAGTACCTATAGCTCTTGCTTCAAACTCCTTACGAGAATACATAGATGCAAAAATCTCTCACCATCGAGGTTGGAAGGAACTGTTTTCAGTAATTCTTGGCAGTGACCAGGTTAAAGCGGGGAAGCCCTCTCCATATTTATTTGAAGAGGCAGCGAAGCAAATGGGTGTGGATGCAGTTCACTGCCTTGTGATTGAAGACTCATTGGTTGGTGTTAAAGCTGCCAATGCTGCCGGAATGGAGGTAGTGGCTATTCCATCCTGTGGTGAAGCTGCCGGTTCTTCTTCCCTTGCAGATACTGTGCTTCATTCTCTTTTGGAGTTTCAACCTGAGCATTGGGGCCTTCCTCCATCTGAGGACTGGGTAGATAAGGCACTGCCAATTGAACCAATTTATTTTAGTGGTCTCTATGTCAATGGGTTTGTCTGTGAAGTCACAGGGGATGGAAGATCTGCTCTCCCGGACCAAGTTTGGGGAGTTTTCTTCGGTTGGGCTGTAGCTGTAGCTGATATGCAGAAGACCTACAGGCAATTACATGCAGTTGATGGAAACAATTGTTGTACATCCAATCAGCAAATGAAACTGCTACTTGTCGGCTACATCCGGGAATCATATACAAAGGAAGTTTCATCAATGGATGCAGAAACACTCGAGGAATGTAAGTCGATTGCAAGTGCTTCACTCGATCTGCCAATATTTAGTCACCATGGTTGTGTGCCTCTGTATCCACCACAACCTTTTTCTGTGGAAGACATGATTGCCAGTGATGAGATAGAACAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

380

Amino Acids

41.74

Weight (kDa)

4.94

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330 FvH4_6g27330
malus_domestica	MD00G1176400.v1.1 MD17G1231100.v1.1
prunus_persica	Prupe.3G121200_v2.0.a1
pyrus_communis	pycom09g15700 pycom17g23430
rosa_chinensis	RchiOBHm_Chr2g0129511
rosa_laevigata	RLG00000019086
rosa_multiflora	Rmu_sc0000999.1_g000022
rosa_roxburghii	Rroxscaffold_2G00114550
rosa_rugosa	Rorug02G0287000
rosa_samantha	Rh2AG338700 Rh2BG347100 Rh2CG326100 Rh2DG365500
rosa_wichuraiana	Rw2G027900 Rw2G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccBSI	CCGCTC	1 cut(s)	106
AccII	CGCG	1 cut(s)	305
AciI	CCGC	4 cut(s)	36, 106, 142, 473
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	4 cut(s)	284, 302, 360, 916
AfiI	CCNNNNNNNGG	2 cut(s)	617, 826
AgsI	TTSAA	5 cut(s)	378, 500, 551, 680, 740
AjnI	CCWGG	2 cut(s)	316, 462
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	7 cut(s)	215, 311, 368, 575, 626, 854, 860
AluI	AGCT	7 cut(s)	215, 311, 368, 575, 626, 854, 860
Alw26I	GTCTC	1 cut(s)	764
AlwNI	CAGNNNCTG	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	1004
AoxI	GGCC	2 cut(s)	138, 694
ApeKI	GCWGC	6 cut(s)	32, 212, 506, 575, 584, 626
ApoI	RAATTY	1 cut(s)	131
AspS9I	GGNCC	3 cut(s)	139, 694, 817
AsuC2I	CCSGG	2 cut(s)	815, 959
AsuHPI	GGTGA	4 cut(s)	238, 407, 632, 1049
AvaI	CYCGRG	1 cut(s)	1004
AvaII	GGWCC	1 cut(s)	817
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	3 cut(s)	558, 878, 1110
BbvI	GCAGC	6 cut(s)	44, 224, 518, 562, 571, 613
BccI	CCATC	6 cut(s)	77, 426, 619, 712, 791, 893
BciT130I	CCWGG	2 cut(s)	318, 464
BciVI	GTATCC	1 cut(s)	1089
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	2 cut(s)	815, 959
BcoDI	GTCTC	1 cut(s)	764
BfmI	CTRYAG	4 cut(s)	363, 849, 855, 877
BfuI	GTATCC	1 cut(s)	1089
BglII	AGATCT	1 cut(s)	803
BisI	GCNGC	7 cut(s)	33, 36, 213, 507, 576, 585, 627
BlsI	GCNGC	7 cut(s)	34, 37, 214, 508, 577, 586, 628
Bme1390I	CCNGG	4 cut(s)	318, 464, 815, 959
Bme18I	GGWCC	1 cut(s)	817
BmeT110I	CYCGRG	1 cut(s)	1004
BmgT120I	GGNCC	3 cut(s)	139, 694, 817
BmiI	GGNNCC	2 cut(s)	88, 695
BmrFI	CCNGG	4 cut(s)	318, 464, 815, 959
BmrI	ACTGGG	1 cut(s)	724
BmsI	GCATC	3 cut(s)	391, 517, 982
BmuI	ACTGGG	1 cut(s)	724
BpiI	GAAGAC	3 cut(s)	558, 878, 1110
Bpu10I	CCTNAGC	1 cut(s)	684
BpuMI	CCSGG	2 cut(s)	815, 959
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	3 cut(s)	145, 352, 1060
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 826
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	2 cut(s)	719, 1116
BseBI	CCWGG	2 cut(s)	318, 464
BseDI	CCNNGG	3 cut(s)	145, 352, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	617, 826
BseMII	CTCAG	2 cut(s)	675, 699
BseNI	ACTGG	2 cut(s)	719, 1116
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	6 cut(s)	44, 224, 518, 562, 571, 613
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	2 cut(s)	140, 696
BshNI	GGYRCC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	4 cut(s)	588, 630, 815, 958
BslI	CCNNNNNNNGG	2 cut(s)	617, 826
BsmAI	GTCTC	1 cut(s)	764
BsnI	GGCC	2 cut(s)	140, 696
Bso31I	GGTCTC	1 cut(s)	764
BsoBI	CYCGRG	1 cut(s)	1004
Bsp1407I	TGTACA	1 cut(s)	914
Bsp143I	GATC	3 cut(s)	253, 803, 1039
Bsp19I	CCATGG	3 cut(s)	145, 352, 1060
BspACI	CCGC	4 cut(s)	36, 106, 142, 473
BspANI	GGCC	2 cut(s)	140, 696
BspCNI	CTCAG	2 cut(s)	676, 700
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	88, 695
BspT107I	GGYRCC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	764
BsrBI	CCGCTC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	629
BsrGI	TGTACA	1 cut(s)	914
BsrI	ACTGG	2 cut(s)	719, 1116
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	3 cut(s)	145, 352, 1060
BssMI	GATC	3 cut(s)	253, 803, 1039
BssT1I	CCWWGG	3 cut(s)	145, 352, 1060
Bst2UI	CCWGG	2 cut(s)	318, 464
Bst4CI	ACNGT	2 cut(s)	438, 655
Bst6I	CTCTTC	2 cut(s)	176, 495
BstAUI	TGTACA	1 cut(s)	914
BstC8I	GCNNGC	2 cut(s)	108, 142
BstDEI	CTNAG	2 cut(s)	684, 708
BstDSI	CCRYGG	3 cut(s)	145, 352, 1060
BstFNI	CGCG	1 cut(s)	305
BstKTI	GATC	3 cut(s)	256, 806, 1042
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	3 cut(s)	253, 803, 1039
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 581, 584
BstNI	CCWGG	2 cut(s)	318, 464
BstNSI	RCATGY	1 cut(s)	893
BstSCI	CCNGG	4 cut(s)	316, 462, 813, 957
BstSFI	CTRYAG	4 cut(s)	363, 849, 855, 877
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	6 cut(s)	44, 224, 518, 562, 571, 613
BstV2I	GAAGAC	3 cut(s)	558, 878, 1110
BstX2I	RGATCY	1 cut(s)	803
BstXI	CCANNNNNNTGG	2 cut(s)	61, 353
BstYI	RGATCY	1 cut(s)	803
BsuI	GTATCC	1 cut(s)	1089
BsuRI	GGCC	2 cut(s)	140, 696
BtgI	CCRYGG	3 cut(s)	145, 352, 1060
BtsI	GCAGTG	3 cut(s)	463, 535, 728
BtsIMutI	CAGTG	4 cut(s)	463, 535, 728, 1123
Cac8I	GCNNGC	2 cut(s)	108, 142
CaiI	CAGNNNCTG	1 cut(s)	653
Cfr10I	RCCGGY	1 cut(s)	629
Cfr13I	GGNCC	3 cut(s)	139, 694, 817
CsiI	ACCWGGT	2 cut(s)	316, 462
Csp6I	GTAC	4 cut(s)	283, 301, 359, 915
CspCI	CAANNNNNGTGG	2 cut(s)	275, 310
CviAII	CATG	7 cut(s)	146, 280, 347, 353, 890, 1061, 1108
CviQI	GTAC	4 cut(s)	283, 301, 359, 915
DdeI	CTNAG	2 cut(s)	684, 708
DpnI	GATC	3 cut(s)	255, 805, 1041
DpnII	GATC	3 cut(s)	253, 803, 1039
Eam1104I	CTCTTC	2 cut(s)	176, 495
EarI	CTCTTC	2 cut(s)	176, 495
Eco130I	CCWWGG	3 cut(s)	145, 352, 1060
Eco31I	GGTCTC	1 cut(s)	764
Eco47I	GGWCC	1 cut(s)	817
Eco88I	CYCGRG	1 cut(s)	1004
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	316, 462
EcoT14I	CCWWGG	3 cut(s)	145, 352, 1060
ErhI	CCWWGG	3 cut(s)	145, 352, 1060
FaeI	CATG	7 cut(s)	149, 283, 350, 356, 893, 1064, 1111
FatI	CATG	7 cut(s)	145, 279, 346, 352, 889, 1060, 1107
FauI	CCCGC	3 cut(s)	99, 149, 466
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	7 cut(s)	33, 36, 213, 507, 576, 585, 627
Fsp4HI	GCNGC	7 cut(s)	33, 36, 213, 507, 576, 585, 627
GluI	GCNGC	7 cut(s)	33, 36, 213, 507, 576, 585, 627
HaeIII	GGCC	2 cut(s)	140, 696
HapII	CCGG	4 cut(s)	588, 630, 815, 958
Hin1II	CATG	7 cut(s)	149, 283, 350, 356, 893, 1064, 1111
HinfI	GANTC	3 cut(s)	206, 554, 962
HpaII	CCGG	4 cut(s)	588, 630, 815, 958
HphI	GGTGA	4 cut(s)	238, 407, 632, 1049
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	1 cut(s)	709
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	2 cut(s)	424, 707
HpyCH4III	ACNGT	2 cut(s)	438, 655
HpyCH4V	TGCA	9 cut(s)	24, 32, 404, 530, 647, 868, 893, 995, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 581, 584
HpyF3I	CTNAG	2 cut(s)	684, 708
Hsp92II	CATG	7 cut(s)	149, 283, 350, 356, 893, 1064, 1111
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	253, 803, 1039
Lsp1109I	GCAGC	6 cut(s)	44, 224, 518, 562, 571, 613
LweI	GCATC	3 cut(s)	391, 517, 982
MabI	ACCWGGT	2 cut(s)	316, 462
MaeIII	GTNAC	3 cut(s)	458, 787, 1055
MalI	GATC	3 cut(s)	255, 805, 1041
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	3 cut(s)	253, 803, 1039
MfeI	CAATTG	2 cut(s)	735, 907
MflI	RGATCY	1 cut(s)	803
MluCI	AATT	6 cut(s)	131, 447, 735, 744, 884, 907
MlyI	GAGTC	2 cut(s)	200, 548
MmeI	TCCRAC	2 cut(s)	289, 407
MseI	TTAA	2 cut(s)	468, 570
MslI	CAYNNNNRTG	4 cut(s)	278, 345, 351, 1065
MspI	CCGG	4 cut(s)	588, 630, 815, 958
MspR9I	CCNGG	4 cut(s)	318, 464, 815, 959
MunI	CAATTG	2 cut(s)	735, 907
MvaI	CCWGG	2 cut(s)	318, 464
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	3 cut(s)	15, 581, 584
NciI	CCSGG	2 cut(s)	815, 959
NcoI	CCATGG	3 cut(s)	145, 352, 1060
NdeII	GATC	3 cut(s)	253, 803, 1039
NlaIII	CATG	7 cut(s)	149, 283, 350, 356, 893, 1064, 1111
NlaIV	GGNNCC	2 cut(s)	88, 695
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	3 cut(s)	458, 787, 1055
NspI	RCATGY	1 cut(s)	893
PaeR7I	CTCGAG	1 cut(s)	1004
PfeI	GAWTC	1 cut(s)	962
PflMI	CCANNNNNTGG	1 cut(s)	617
PfoI	TCCNGGA	2 cut(s)	813, 957
PkrI	GCNGC	7 cut(s)	34, 37, 214, 508, 577, 586, 628
PleI	GAGTC	2 cut(s)	200, 548
PpsI	GAGTC	2 cut(s)	200, 548
Psp6I	CCWGG	2 cut(s)	316, 462
PspGI	CCWGG	2 cut(s)	316, 462
PspN4I	GGNNCC	2 cut(s)	88, 695
PspPI	GGNCC	3 cut(s)	139, 694, 817
PspXI	VCTCGAGB	1 cut(s)	1004
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	803
RsaI	GTAC	4 cut(s)	284, 302, 360, 916
RsaNI	GTAC	4 cut(s)	283, 301, 359, 915
RseI	CAYNNNNRTG	4 cut(s)	278, 345, 351, 1065
SaqAI	TTAA	2 cut(s)	468, 570
SatI	GCNGC	7 cut(s)	33, 36, 213, 507, 576, 585, 627
Sau3AI	GATC	3 cut(s)	253, 803, 1039
Sau96I	GGNCC	3 cut(s)	139, 694, 817
SchI	GAGTC	2 cut(s)	200, 548
ScrFI	CCNGG	4 cut(s)	318, 464, 815, 959
SexAI	ACCWGGT	2 cut(s)	316, 462
SfaNI	GCATC	3 cut(s)	391, 517, 982
SfcI	CTRYAG	4 cut(s)	363, 849, 855, 877
Sfr274I	CTCGAG	1 cut(s)	1004
SinI	GGWCC	1 cut(s)	817
SlaI	CTCGAG	1 cut(s)	1004
SmiMI	CAYNNNNRTG	4 cut(s)	278, 345, 351, 1065
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
Sse9I	AATT	6 cut(s)	131, 447, 735, 744, 884, 907
SsiI	CCGC	4 cut(s)	36, 106, 142, 473
SspI	AATATT	1 cut(s)	1050
StyD4I	CCNGG	4 cut(s)	316, 462, 813, 957
StyI	CCWWGG	3 cut(s)	145, 352, 1060
TaaI	ACNGT	2 cut(s)	438, 655
TaqI	TCGA	5 cut(s)	126, 421, 1005, 1019, 1038
TasI	AATT	6 cut(s)	131, 447, 735, 744, 884, 907
TatI	WGTACW	1 cut(s)	914
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	962
Tru1I	TTAA	2 cut(s)	468, 570
Tru9I	TTAA	2 cut(s)	468, 570
TscAI	CASTG	4 cut(s)	463, 542, 735, 1123
TseFI	GTSAC	3 cut(s)	458, 787, 1055
TseI	GCWGC	6 cut(s)	32, 212, 506, 575, 584, 626
Tsp45I	GTSAC	3 cut(s)	458, 787, 1055
TspDTI	ATGAA	4 cut(s)	17, 650, 947, 972
TspRI	CASTG	4 cut(s)	463, 542, 735, 1123
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	817
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	893
XcmI	CCANNNNNNNNNTGG	1 cut(s)	711
XhoI	CTCGAG	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.