Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011325

Physical Location & Seq

Genomic Coordinates Reverse (-)

21521158 .. 21527269

Gene Structure 6112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGTGGAGGTCAGTCGCCGCAAGATCAAGAGCTTCTCTTTTGACCAAGGCAGCAGATAACTTTGTTGCTTCTACCCAAAACCCCAAGGTACTCCCCTCTAAAACCCTAACCCCACTCTCTCATTTCCCCACTAGATCCCCTCTTCCCAGGTTCTTCTCTCAGCTTTCCGAAAACCTCAGTTATTCTGACACCGCAGAACCGCCTCCGTTTTCCGTCGCTGAAAACGAAAATGACGATTTTGCCCCCGGGGATGGGGTTGCTGGTGTTTCAGAGGAACTGGGTTCTGCTGAGATTGGGGAGGTAGGGGAGGAGGAAGAGGCTCACGAGATTGATGTGGAGAAATTGGAGGGGTTGTTGTCTTTGCTTAGTGGTAGTGCTGATGGGTCACTTGAGTCTAGTTTTAGGGATTTGGATTTGACTTTACATGAAGATTTTGTGGTTAAAGTAGTCGAAACTCCGGTTGTTGTGGGGGAGAATTTGATTAGGTTCTTCAAGTGGGGTTTGAAGGAGAAACCCGAGTTTCGAGTCAATAGGCAGATATTGGATGGGGTTGTGCTTGCAATGTGTGGGGAAGGTGTGACCAAGGAAGATATGTATTCTTTGTGGGATTTGGTTAAGAGGGTTGGGGAGAATGAGAGCAATTTGTTGAATGTGGATATTCTTAATGTGTTGATGTCTTCGTTCACGAAATTGGGGGAAGGAAGAGCTGCTTTGGTGGTGTTGAGCAAGTTTGATGGTTTTGGATGTGTCCCGAGTGCGGATTCATATTACGTTGCAATTGAGGGGCTTTGCAAGAGTGGAGATTTTGATTGTGCTAAGTCTGTTTCTGAGAAGATGATTGAGGCAAGAAGCTCGCCCGATGCTGAGAAGGTTGGTAGGATCATATCTTGGTTCTGCAAGGCTGGAATGGCTAAAGATGCCCATTCGGTGTATTTGTTGTTGAAGGAGGAGAAGCAGTGCCGGCCTAGCTCGTCTGTTTATTTTTTGATCAGTTCACTTAGTAGGGAGGATGAAAATGTTAAATTAGCTCTAGACTTGCTGGAGGAGATTACTGGTGAAGCACGGAAATATGCGATAAAGCCCTTTTCAGCTGTTGTTCAAGGGTTATGCAGGATAAAGGATGTTGATGGGGCTAGAAAGTTGCTTATTCAGATGACAAAAGAAGGCCCACCTCCTGGAAATGCAGTTTTCAATTCGGTTATCAATGGCTATTCTAAGGCTGGGGATATGCAAGATGCGATAGAGATGTTGAAGCTGATGGAGAGTAGGGGATTGAAACCAGATGTTTTTACCTACACCGTTATTATGAGTGGTTATGCAAAAGGTGGTCAGATGGAGGAGGCATGCATTATCTTATCTGAAGCAAAAAAGAAGCATGCAAAATTGACTCCTGTGACTTACCATACACTCATCTCCAGCTTTTGCAAACTGGAACAGTTTGACAGAGCTTTGGAGTTGTTTCACGAGATGAAAGATTTTGGGGTCCAACCCACGACTGATGAATACAACAAGTTGATCCAATCGCTTTGCCTGAAAGCACTAGATTGGGAAACGTCAGAGAAACTGCTAGAAGAAATGAGAAATAGTGGATTGTATCTTAATGGAATTACGAGAGGTCTCATAAGAGCAGTCAAGGAACTGCAGACTGAGAAAGTAGAGTGTGAGCAAATAGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

560

Amino Acids

61.79

Weight (kDa)

4.99

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	394 - 441	3.8e-15	PPR repeat family
PPR	PF01535	396 - 425	8.4e-08	PPR repeat
PPR_3	PF13812	396 - 439	4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	423 - 453	3.1e-06	PPR repeat
PPR_2	PF13041	433 - 476	3.6e-07	PPR repeat family
PPR_3	PF13812	451 - 507	6.6e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	452 - 530	7.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	461 - 491	5.9e-08	PPR repeat
PPR_2	PF13041	465 - 510	9.3e-11	PPR repeat family
PPR	PF01535	465 - 495	1.3e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02650
fragaria_vesca	FvH4_6g27990
malus_domestica	MD00G1017000.v1.1
prunus_persica	Prupe.6G365500_v2.0.a1 Prupe.6G365500_v2.0.a1
pyrus_communis	pycom04g22030 pycom12g24250
rosa_chinensis	RchiOBHm_Chr2g0131651
rosa_laevigata	RLG00000019202
rosa_multiflora	Rmu_sc0002589.1_g000013 Rmu_sc0006926.1_g000033 Rmu_sc0042933.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112740
rosa_rugosa	Rorug02G0298600 Rorug02G0298700
rosa_samantha	Rh2AG351400 Rh2BG358300 Rh2CG336900 Rh2DG375600
rosa_wichuraiana	Rw2G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1175
AciI	CCGC	4 cut(s)	18, 192, 200, 758
AclWI	GGATC	3 cut(s)	129, 887, 1510
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	1 cut(s)	1380
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	4 cut(s)	251, 252, 757, 1175
AgsI	TTSAA	8 cut(s)	493, 505, 649, 943, 1100, 1192, 1252, 1276
AjnI	CCWGG	2 cut(s)	146, 1174
Alw26I	GTCTC	1 cut(s)	1622
AlwI	GGATC	3 cut(s)	129, 887, 1510
Ama87I	CYCGRG	3 cut(s)	245, 515, 751
AoxI	GGCC	2 cut(s)	962, 1165
ApeKI	GCWGC	2 cut(s)	50, 707
ApoI	RAATTY	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	1166, 1483
AsuC2I	CCSGG	2 cut(s)	246, 247
AsuHPI	GGTGA	1 cut(s)	1067
AvaI	CYCGRG	3 cut(s)	245, 515, 751
AvaII	GGWCC	1 cut(s)	1483
BauI	CACGAG	2 cut(s)	323, 1463
BbsI	GAAGAC	1 cut(s)	669
BbvI	GCAGC	2 cut(s)	62, 694
BccI	CCATC	7 cut(s)	245, 374, 539, 728, 1121, 1252, 1327
BcgI	CGANNNNNNTGC	2 cut(s)	834, 868
BciT130I	CCWGG	2 cut(s)	148, 1176
BclI	TGATCA	1 cut(s)	987
BcnI	CCSGG	2 cut(s)	246, 247
BcoDI	GTCTC	1 cut(s)	1622
BfaI	CTAG	7 cut(s)	132, 396, 966, 1031, 1134, 1541, 1568
BfmI	CTRYAG	1 cut(s)	1640
BisI	GCNGC	3 cut(s)	18, 51, 708
BlsI	GCNGC	3 cut(s)	19, 52, 709
Bme1390I	CCNGG	4 cut(s)	148, 246, 247, 1176
Bme18I	GGWCC	1 cut(s)	1483
BmeT110I	CYCGRG	3 cut(s)	245, 515, 751
BmgT120I	GGNCC	2 cut(s)	1166, 1483
BmiI	GGNNCC	1 cut(s)	1484
BmrFI	CCNGG	4 cut(s)	148, 246, 247, 1176
BmrI	ACTGGG	1 cut(s)	287
BmsI	GCATC	3 cut(s)	850, 907, 1225
BmuI	ACTGGG	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	2 cut(s)	1061, 1399
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	2 cut(s)	246, 247
BsaI	GGTCTC	1 cut(s)	1622
BsaJI	CCNNGG	7 cut(s)	45, 84, 146, 244, 245, 246, 582
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 368, 941, 971
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 252, 757, 1175
Bse118I	RCCGGY	1 cut(s)	960
Bse1I	ACTGG	3 cut(s)	282, 1057, 1434
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	2 cut(s)	148, 1176
BseDI	CCNNGG	7 cut(s)	45, 84, 146, 244, 245, 246, 582
BseGI	GGATG	5 cut(s)	256, 550, 749, 1015, 1126
BseLI	CCNNNNNNNGG	4 cut(s)	251, 252, 757, 1175
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	6 cut(s)	173, 190, 279, 819, 855, 1638
BseNI	ACTGG	3 cut(s)	282, 1057, 1434
BseRI	GAGGAG	4 cut(s)	323, 962, 1058, 1352
BseXI	GCAGC	2 cut(s)	62, 694
BseYI	CCCAGC	1 cut(s)	1220
BshFI	GGCC	2 cut(s)	964, 1167
BsiHKCI	CYCGRG	3 cut(s)	245, 515, 751
BsiSI	CCGG	3 cut(s)	246, 458, 961
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	4 cut(s)	251, 252, 757, 1175
BsmAI	GTCTC	1 cut(s)	1622
BsmFI	GGGAC	1 cut(s)	734
BsnI	GGCC	2 cut(s)	964, 1167
Bso31I	GGTCTC	1 cut(s)	1622
BsoBI	CYCGRG	3 cut(s)	245, 515, 751
Bsp143I	GATC	5 cut(s)	23, 134, 879, 987, 1515
BspACI	CCGC	4 cut(s)	18, 192, 200, 758
BspANI	GGCC	2 cut(s)	964, 1167
BspCNI	CTCAG	6 cut(s)	172, 189, 280, 820, 856, 1639
BspLI	GGNNCC	1 cut(s)	1484
BspMAI	CTGCAG	1 cut(s)	1644
BspPI	GGATC	3 cut(s)	129, 887, 1510
BspQI	GCTCTTC	1 cut(s)	697
BspTNI	GGTCTC	1 cut(s)	1622
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	960
BsrI	ACTGG	3 cut(s)	282, 1057, 1434
BssAI	RCCGGY	1 cut(s)	960
BssECI	CCNNGG	7 cut(s)	45, 84, 146, 244, 245, 246, 582
BssMI	GATC	5 cut(s)	23, 134, 879, 987, 1515
BssSI	CACGAG	2 cut(s)	323, 1463
BssT1I	CCWWGG	3 cut(s)	45, 84, 582
Bst2BI	CACGAG	2 cut(s)	323, 1463
Bst2UI	CCWGG	2 cut(s)	148, 1176
Bst4CI	ACNGT	2 cut(s)	1300, 1437
Bst6I	CTCTTC	3 cut(s)	147, 309, 697
BstC8I	GCNNGC	5 cut(s)	558, 854, 962, 1345, 1377
BstF5I	GGATG	5 cut(s)	256, 550, 749, 1015, 1126
BstKTI	GATC	5 cut(s)	26, 137, 882, 990, 1518
BstMAI	GTCTC	1 cut(s)	1622
BstMBI	GATC	5 cut(s)	23, 134, 879, 987, 1515
BstMWI	GCNNNNNNNGC	4 cut(s)	908, 917, 961, 966
BstNI	CCWGG	2 cut(s)	148, 1176
BstNSI	RCATGY	2 cut(s)	1347, 1379
BstSCI	CCNGG	4 cut(s)	146, 244, 245, 1174
BstSFI	CTRYAG	1 cut(s)	1640
BstV1I	GCAGC	2 cut(s)	62, 694
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	964, 1167
BtsCI	GGATG	5 cut(s)	256, 550, 749, 1015, 1126
BtsI	GCAGTG	1 cut(s)	962
BtsIMutI	CAGTG	1 cut(s)	962
Cac8I	GCNNGC	5 cut(s)	558, 854, 962, 1345, 1377
Cfr10I	RCCGGY	1 cut(s)	960
Cfr13I	GGNCC	2 cut(s)	1166, 1483
Cfr9I	CCCGGG	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	3 cut(s)	425, 1344, 1376
CviQI	GTAC	1 cut(s)	89
DpnI	GATC	5 cut(s)	25, 136, 881, 989, 1517
DpnII	GATC	5 cut(s)	23, 134, 879, 987, 1515
Eam1104I	CTCTTC	3 cut(s)	147, 309, 697
EarI	CTCTTC	3 cut(s)	147, 309, 697
Eco130I	CCWWGG	3 cut(s)	45, 84, 582
Eco31I	GGTCTC	1 cut(s)	1622
Eco47I	GGWCC	1 cut(s)	1483
Eco57I	CTGAAG	1 cut(s)	1380
Eco88I	CYCGRG	3 cut(s)	245, 515, 751
EcoRII	CCWGG	2 cut(s)	146, 1174
EcoT14I	CCWWGG	3 cut(s)	45, 84, 582
EcoT22I	ATGCAT	1 cut(s)	1349
ErhI	CCWWGG	3 cut(s)	45, 84, 582
FaeI	CATG	3 cut(s)	428, 1347, 1379
FalI	AAGNNNNNCTT	2 cut(s)	694, 726
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	3 cut(s)	424, 1343, 1375
FbaI	TGATCA	1 cut(s)	987
Fnu4HI	GCNGC	3 cut(s)	18, 51, 708
FokI	GGATG	5 cut(s)	263, 557, 756, 1022, 1133
Fsp4HI	GCNGC	3 cut(s)	18, 51, 708
FspBI	CTAG	7 cut(s)	132, 396, 966, 1031, 1134, 1541, 1568
GluI	GCNGC	3 cut(s)	18, 51, 708
GsaI	CCCAGC	1 cut(s)	1224
GsuI	CTGGAG	2 cut(s)	1061, 1399
HaeIII	GGCC	2 cut(s)	964, 1167
HapII	CCGG	3 cut(s)	246, 458, 961
Hin1II	CATG	3 cut(s)	428, 1347, 1379
HinfI	GANTC	4 cut(s)	392, 525, 761, 1387
HpaII	CCGG	3 cut(s)	246, 458, 961
HphI	GGTGA	1 cut(s)	1067
Hpy166II	GTNNAC	2 cut(s)	684, 995
Hpy188I	TCNGA	8 cut(s)	169, 187, 271, 829, 1152, 1332, 1360, 1558
Hpy188III	TCNNGA	6 cut(s)	27, 323, 685, 751, 1031, 1463
Hpy8I	GTNNAC	2 cut(s)	684, 995
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	6 cut(s)	499, 566, 692, 862, 937, 1157
HpyCH4III	ACNGT	2 cut(s)	1300, 1437
HpyCH4IV	ACGT	2 cut(s)	771, 1553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	908, 917, 961, 966
HpySE526I	ACGT	2 cut(s)	771, 1553
Hsp92II	CATG	3 cut(s)	428, 1347, 1379
KroI	GCCGGC	1 cut(s)	960
KroNI	GCCGGC	1 cut(s)	962
Ksp22I	TGATCA	1 cut(s)	987
Kzo9I	GATC	5 cut(s)	23, 134, 879, 987, 1515
LguI	GCTCTTC	1 cut(s)	697
Lsp1109I	GCAGC	2 cut(s)	62, 694
LweI	GCATC	3 cut(s)	850, 907, 1225
MaeI	CTAG	7 cut(s)	132, 396, 966, 1031, 1134, 1541, 1568
MaeII	ACGT	2 cut(s)	771, 1553
MaeIII	GTNAC	3 cut(s)	384, 577, 1393
MalI	GATC	5 cut(s)	25, 136, 881, 989, 1517
MboI	GATC	5 cut(s)	23, 134, 879, 987, 1515
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	9 cut(s)	341, 475, 640, 689, 777, 1022, 1192, 1382, 1605
MlyI	GAGTC	3 cut(s)	401, 534, 1381
MmeI	TCCRAC	1 cut(s)	1510
Mph1103I	ATGCAT	1 cut(s)	1349
MroNI	GCCGGC	1 cut(s)	960
MseI	TTAA	5 cut(s)	441, 615, 663, 1020, 1599
MspA1I	CMGCKG	1 cut(s)	1091
MspI	CCGG	3 cut(s)	246, 458, 961
MspR9I	CCNGG	4 cut(s)	148, 246, 247, 1176
MunI	CAATTG	1 cut(s)	777
MvaI	CCWGG	2 cut(s)	148, 1176
MwoI	GCNNNNNNNGC	4 cut(s)	908, 917, 961, 966
NaeI	GCCGGC	1 cut(s)	962
NciI	CCSGG	2 cut(s)	246, 247
NdeII	GATC	5 cut(s)	23, 134, 879, 987, 1515
NgoMIV	GCCGGC	1 cut(s)	960
NlaIII	CATG	3 cut(s)	428, 1347, 1379
NlaIV	GGNNCC	1 cut(s)	1484
NmuCI	GTSAC	3 cut(s)	384, 577, 1393
NsiI	ATGCAT	1 cut(s)	1349
NspI	RCATGY	2 cut(s)	1347, 1379
PaeI	GCATGC	2 cut(s)	1347, 1379
PciSI	GCTCTTC	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 231
PdiI	GCCGGC	1 cut(s)	962
PfeI	GAWTC	1 cut(s)	761
PflMI	CCANNNNNTGG	1 cut(s)	1175
PfoI	TCCNGGA	1 cut(s)	1174
PkrI	GCNGC	3 cut(s)	19, 52, 709
PleI	GAGTC	3 cut(s)	400, 533, 1381
PpsI	GAGTC	3 cut(s)	400, 533, 1381
Psp6I	CCWGG	2 cut(s)	146, 1174
PspFI	CCCAGC	1 cut(s)	1220
PspGI	CCWGG	2 cut(s)	146, 1174
PspN4I	GGNNCC	1 cut(s)	1484
PspPI	GGNCC	2 cut(s)	1166, 1483
PstI	CTGCAG	1 cut(s)	1644
PsuI	RGATCY	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	1091
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	697
SaqAI	TTAA	5 cut(s)	441, 615, 663, 1020, 1599
SatI	GCNGC	3 cut(s)	18, 51, 708
Sau3AI	GATC	5 cut(s)	23, 134, 879, 987, 1515
Sau96I	GGNCC	2 cut(s)	1166, 1483
SchI	GAGTC	3 cut(s)	401, 534, 1381
ScrFI	CCNGG	4 cut(s)	148, 246, 247, 1176
SfaNI	GCATC	3 cut(s)	850, 907, 1225
SfcI	CTRYAG	1 cut(s)	1640
SinI	GGWCC	1 cut(s)	1483
SmaI	CCCGGG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SphI	GCATGC	2 cut(s)	1347, 1379
Sse9I	AATT	9 cut(s)	341, 475, 640, 689, 777, 1022, 1192, 1382, 1605
SsiI	CCGC	4 cut(s)	18, 192, 200, 758
SspMI	CTAG	7 cut(s)	132, 396, 966, 1031, 1134, 1541, 1568
StyD4I	CCNGG	4 cut(s)	146, 244, 245, 1174
StyI	CCWWGG	3 cut(s)	45, 84, 582
TaaI	ACNGT	2 cut(s)	1300, 1437
TaiI	ACGT	2 cut(s)	774, 1556
TaqI	TCGA	2 cut(s)	450, 523
TasI	AATT	9 cut(s)	341, 475, 640, 689, 777, 1022, 1192, 1382, 1605
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	5 cut(s)	441, 615, 663, 1020, 1599
Tru9I	TTAA	5 cut(s)	441, 615, 663, 1020, 1599
TscAI	CASTG	1 cut(s)	962
TseFI	GTSAC	3 cut(s)	384, 577, 1393
TseI	GCWGC	2 cut(s)	50, 707
Tsp45I	GTSAC	3 cut(s)	384, 577, 1393
TspDTI	ATGAA	5 cut(s)	441, 753, 1026, 1484, 1515
TspGWI	ACGGA	3 cut(s)	195, 202, 1078
TspMI	CCCGGG	1 cut(s)	245
TspRI	CASTG	1 cut(s)	962
Van91I	CCANNNNNTGG	1 cut(s)	1175
VpaK11BI	GGWCC	1 cut(s)	1483
XapI	RAATTY	1 cut(s)	475
XbaI	TCTAGA	1 cut(s)	1030
XceI	RCATGY	2 cut(s)	1347, 1379
XmaI	CCCGGG	1 cut(s)	245
XspI	CTAG	7 cut(s)	132, 396, 966, 1031, 1134, 1541, 1568
Zsp2I	ATGCAT	1 cut(s)	1349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.