Prupe.6G365500_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
30677010 .. 30679410
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G365500.1

Sequence Viewer

Length: 1731 bp
ATGTGGAGGTCTGTTGTGACAGCAAGAGCTTCTCTTTCGACACAGGCGGCACAGAAGTTGTGTGCAACTCGAAACCATAAGGTGCTTTCCTCTAAAACCCTAACACTAGTTGATCAATCTCCTCATTTTCCGACCAGATTATCTCTCTGCCAAACCCGTAGGTTCCTTTCTCAGCTCTCAGAAAACCCTAGTGATTCTGATTCAGCTGAAGGACAACAGCTATCAGTGGACTTTGGTGAAAATGGTGATACACATAGGGAAAATCTTACCCCTGGGAATGGGCTTGTTGGAGAGGAAAAGGGTGATACTCAGATGAACATGTTTTCCCCCCCTGCTGTAGAGTTGGGGGAAGTGGAAGAGGTTTATGAGATTGATTTGGAGCAGTTGGAGAGTTTATTGTCTCTTCTTCAGAGCAGTGCTGATGGGTGTCTTGAGTCTAGTTTTGATGGTTTAAATTTGACTTTACATCCAGAGTTTGTGATTAAAGTAGTTGAAACCCCACTTGTTTTGGGTGAGAATTTGATTAGGTTTTTCAAGTGGGCGTTGAAGGAGAAACCCGAGTTTGGTGTCACTACGCACATACTGGATGCACTTGTTCGAGCGACATGTAGTGGCCTCGTTAGGAAGAGAGATGTGTATTATTTGTGGGATTTAGTTAAGGAGGTTGGTGAGAAGGAGAACACTGTGGTGCATGTGGAAATTCTCAACGCATTGATATCTTCATTCTCAAAATTGGGTAAAGGGAAAGCTGCTTTGGAGGTGTTCAACAAGTTTGGTGATTTTGGATGTGTCCCAAATGCAGATACATATTACTTTACAATTGAAGCACTTTGCAGGCGTTCAATTTTTGGTTGGGCTCAGTCTGTTTGTGAGAAGATGCTTGATGCGGGAATCTTGCCTGACGGTGAGAAAGTTGGTAGGATCATATCCTGGTTTTGCAAGGGTAAAAAAGCTAAAGATGCCCATTTGGTTTATTCCTCGGCGGCGAATGTGAAGAAGCAGTACCTGCCTCCCGCTTCGGTTTATTTTTTGATCAGTTCACTCTGTAGGGAGGATGAAACCGTTAAATTAGCTCTAGATATGTTAGATGATTTTGCTGGTGAAGCACGGAAATATGCGATTAAGCCCTTTTCAGCTGTTGTTCGAGGTTTGTGTAGGACAAAGGATGTCGATGGGGCCAAAAAATTGCTTCTTGAGATGACAATGAAGGGCCCACCTCCAGGAAATGCAGTTTTCAATATGGTAATCAATTGCTATTGTAAGGCTGGGGATATGGGAGAGGCAATTGAGATGATGAATCTAATGAAGAGTAGGGGGTTGAAACCAGATGTGTATACTTACACTGTTATCATGAGTGGTTATACAAATGGAGGTCAGATGGAGGAGGCTTGTAAAATATTATCCGAAGCCAAAAACAAGCACCCCAAATTGAGTCCTGTGACTTACCATACACTCATCCGTGGGTATTGCAAACTGGAAGAGTTCGATAAGGGTTTAAAGTTGTTGCGCGAGATGAAAGATTCTGGGGTCCAACCTAATGTTGATGAGTACAATAAGTTGATCCAATCTCTTTGCCTCAAGGCCTTGGATTGGGAAACAGCAGAAAAACTACTTGAAGAAATGAAGGATAATGGGTTGCATCTCAATGGGATTACTCGGGGTCTTATAAAAGCTGTGAAGGAACTGAAGGAGGAGAAAATAGAGACTGAGAATGTAGTTGCAGAAGCCTAA

Protein Analysis

577

Amino Acids

64.12

Weight (kDa)

5.77

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1667
Acc36I ACCTGC 1 cut(s) 1014
AccI GTMKAC 1 cut(s) 1334
AccII CGCG 1 cut(s) 1509
AciI CCGC 4 cut(s) 47, 887, 983, 1014
AclWI GGATC 2 cut(s) 929, 1555
AcsI RAATTY 3 cut(s) 454, 517, 699
AcuI CTGAAG 3 cut(s) 228, 392, 1706
AfaI GTAC 2 cut(s) 1004, 1550
AfiI CCNNNNNNNGG 4 cut(s) 278, 563, 1220, 1590
AflIII ACRYGT 2 cut(s) 318, 605
AgsI TTSAA 9 cut(s) 494, 535, 547, 766, 824, 843, 1237, 1321, 1616
AhlI ACTAGT 1 cut(s) 106
AjnI CCWGG 3 cut(s) 271, 929, 1219
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AleI CACNNNNGTG 1 cut(s) 686
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 9 cut(s) 29, 175, 206, 220, 749, 953, 1073, 1136, 1673
AluI AGCT 9 cut(s) 29, 175, 206, 220, 749, 953, 1073, 1136, 1673
Alw26I GTCTC 2 cut(s) 405, 1697
AlwI GGATC 2 cut(s) 929, 1555
AlwNI CAGNNNCTG 1 cut(s) 1006
Ama87I CYCGRG 2 cut(s) 557, 1656
AoxI GGCC 4 cut(s) 613, 1176, 1210, 1581
ApaI GGGCCC 1 cut(s) 1214
ApeKI GCWGC 1 cut(s) 749
ApoI RAATTY 3 cut(s) 454, 517, 699
AspLEI GCGC 1 cut(s) 1509
AspS9I GGNCC 4 cut(s) 1176, 1210, 1211, 1528
AsuHPI GGTGA 8 cut(s) 248, 257, 314, 524, 680, 788, 917, 1112
AvaI CYCGRG 2 cut(s) 557, 1656
AvaII GGWCC 1 cut(s) 1528
BaeGI GKGCMC 1 cut(s) 1214
BanII GRGCYC 2 cut(s) 859, 1214
BarI GAAGNNNNNNTAC 2 cut(s) 986, 1018
BbvI GCAGC 1 cut(s) 736
BccI CCATC 4 cut(s) 416, 440, 1166, 1372
BciT130I CCWGG 3 cut(s) 273, 931, 1221
BclI TGATCA 2 cut(s) 112, 1032
BcoDI GTCTC 2 cut(s) 405, 1697
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 4 cut(s) 107, 189, 438, 1076
BfmI CTRYAG 2 cut(s) 336, 1045
BfuAI ACCTGC 1 cut(s) 1014
BisI GCNGC 3 cut(s) 48, 750, 984
BlsI GCNGC 3 cut(s) 49, 751, 985
Bme1390I CCNGG 3 cut(s) 273, 931, 1221
Bme18I GGWCC 1 cut(s) 1528
BmeT110I CYCGRG 2 cut(s) 557, 1656
BmgT120I GGNCC 4 cut(s) 1176, 1210, 1211, 1528
BmiI GGNNCC 4 cut(s) 164, 1177, 1212, 1529
BmrFI CCNGG 3 cut(s) 273, 931, 1221
BmsI GCATC 5 cut(s) 577, 867, 874, 949, 1648
BpmI CTGGAG 1 cut(s) 1203
BpuEI CTTGAG 3 cut(s) 452, 1214, 1562
BsaJI CCNNGG 5 cut(s) 271, 272, 978, 1459, 1584
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 563, 1220, 1590
Bse1I ACTGG 2 cut(s) 588, 1479
BseBI CCWGG 3 cut(s) 273, 931, 1221
BseDI CCNNGG 5 cut(s) 271, 272, 978, 1459, 1584
BseGI GGATG 6 cut(s) 466, 592, 791, 1060, 1171, 1455
BseLI CCNNNNNNNGG 4 cut(s) 278, 563, 1220, 1590
BseMII CTCAG 5 cut(s) 185, 192, 323, 872, 1698
BseNI ACTGG 2 cut(s) 588, 1479
BseRI GAGGAG 3 cut(s) 111, 1397, 1706
BseSI GKGCMC 1 cut(s) 1214
BseXI GCAGC 1 cut(s) 736
BseYI CCCAGC 1 cut(s) 1265
Bsh1236I CGCG 1 cut(s) 1509
BshFI GGCC 4 cut(s) 615, 1178, 1212, 1583
BsiHKCI CYCGRG 2 cut(s) 557, 1656
BslFI GGGAC 1 cut(s) 776
BslI CCNNNNNNNGG 4 cut(s) 278, 563, 1220, 1590
BsmAI GTCTC 2 cut(s) 405, 1697
BsmFI GGGAC 1 cut(s) 776
BsnI GGCC 4 cut(s) 615, 1178, 1212, 1583
BsoBI CYCGRG 2 cut(s) 557, 1656
Bsp120I GGGCCC 1 cut(s) 1210
Bsp1286I GDGCHC 2 cut(s) 859, 1214
Bsp143I GATC 4 cut(s) 112, 921, 1032, 1560
BspACI CCGC 4 cut(s) 47, 887, 983, 1014
BspANI GGCC 4 cut(s) 615, 1178, 1212, 1583
BspCNI CTCAG 5 cut(s) 184, 191, 322, 871, 1699
BspFNI CGCG 1 cut(s) 1509
BspHI TCATGA 1 cut(s) 1350
BspLI GGNNCC 4 cut(s) 164, 1177, 1212, 1529
BspMI ACCTGC 1 cut(s) 1014
BspPI GGATC 2 cut(s) 929, 1555
BsrI ACTGG 2 cut(s) 588, 1479
BssECI CCNNGG 5 cut(s) 271, 272, 978, 1459, 1584
BssMI GATC 4 cut(s) 112, 921, 1032, 1560
BssNAI GTATAC 1 cut(s) 1335
BssT1I CCWWGG 1 cut(s) 1584
Bst1107I GTATAC 1 cut(s) 1335
Bst2UI CCWGG 3 cut(s) 273, 931, 1221
Bst4CI ACNGT 4 cut(s) 685, 905, 1063, 1345
Bst6I CTCTTC 5 cut(s) 351, 408, 620, 1301, 1473
BstAPI GCANNNNNTGC 1 cut(s) 1006
BstC8I GCNNGC 1 cut(s) 836
BstDEI CTNAG 5 cut(s) 171, 178, 309, 858, 1707
BstDSI CCRYGG 1 cut(s) 1459
BstF5I GGATG 6 cut(s) 466, 592, 791, 1060, 1171, 1455
BstFNI CGCG 1 cut(s) 1509
BstHHI GCGC 1 cut(s) 1509
BstKTI GATC 4 cut(s) 115, 924, 1035, 1563
BstMAI GTCTC 2 cut(s) 405, 1697
BstMBI GATC 4 cut(s) 112, 921, 1032, 1560
BstMWI GCNNNNNNNGC 3 cut(s) 959, 1006, 1103
BstNI CCWGG 3 cut(s) 273, 931, 1221
BstNSI RCATGY 3 cut(s) 322, 609, 695
BstSCI CCNGG 3 cut(s) 271, 929, 1219
BstSFI CTRYAG 2 cut(s) 336, 1045
BstSLI GKGCMC 1 cut(s) 1214
BstUI CGCG 1 cut(s) 1509
BstV1I GCAGC 1 cut(s) 736
BstZ17I GTATAC 1 cut(s) 1335
BsuRI GGCC 4 cut(s) 615, 1178, 1212, 1583
BtgI CCRYGG 1 cut(s) 1459
BtsCI GGATG 6 cut(s) 466, 592, 791, 1060, 1171, 1455
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 4 cut(s) 231, 421, 681, 1341
BveI ACCTGC 1 cut(s) 1014
Cac8I GCNNGC 1 cut(s) 836
CaiI CAGNNNCTG 1 cut(s) 1006
CciI TCATGA 1 cut(s) 1350
CfoI GCGC 1 cut(s) 1509
Cfr13I GGNCC 4 cut(s) 1176, 1210, 1211, 1528
Csp6I GTAC 2 cut(s) 1003, 1549
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 4 cut(s) 319, 606, 692, 1351
CviQI GTAC 2 cut(s) 1003, 1549
DdeI CTNAG 5 cut(s) 171, 178, 309, 858, 1707
DpnI GATC 4 cut(s) 114, 923, 1034, 1562
DpnII GATC 4 cut(s) 112, 921, 1032, 1560
DraI TTTAAA 2 cut(s) 453, 1497
Eam1104I CTCTTC 5 cut(s) 351, 408, 620, 1301, 1473
EarI CTCTTC 5 cut(s) 351, 408, 620, 1301, 1473
Eco130I CCWWGG 1 cut(s) 1584
Eco147I AGGCCT 1 cut(s) 1583
Eco24I GRGCYC 2 cut(s) 859, 1214
Eco32I GATATC 1 cut(s) 717
Eco47I GGWCC 1 cut(s) 1528
Eco57I CTGAAG 3 cut(s) 228, 392, 1706
Eco88I CYCGRG 2 cut(s) 557, 1656
EcoO109I RGGNCCY 1 cut(s) 1210
EcoRII CCWGG 3 cut(s) 271, 929, 1219
EcoRV GATATC 1 cut(s) 717
EcoT14I CCWWGG 1 cut(s) 1584
EcoT38I GRGCYC 2 cut(s) 859, 1214
ErhI CCWWGG 1 cut(s) 1584
FaeI CATG 4 cut(s) 322, 609, 695, 1354
FaqI GGGAC 1 cut(s) 776
FatI CATG 4 cut(s) 318, 605, 691, 1350
FauI CCCGC 2 cut(s) 880, 1021
FbaI TGATCA 2 cut(s) 112, 1032
FblI GTMKAC 1 cut(s) 1334
Fnu4HI GCNGC 3 cut(s) 48, 750, 984
FokI GGATG 6 cut(s) 453, 599, 798, 1067, 1178, 1442
FriOI GRGCYC 2 cut(s) 859, 1214
Fsp4HI GCNGC 3 cut(s) 48, 750, 984
FspBI CTAG 4 cut(s) 107, 189, 438, 1076
GlaI GCGC 1 cut(s) 1508
GluI GCNGC 3 cut(s) 48, 750, 984
GsaI CCCAGC 1 cut(s) 1269
GsuI CTGGAG 1 cut(s) 1203
HaeIII GGCC 4 cut(s) 615, 1178, 1212, 1583
HhaI GCGC 1 cut(s) 1509
Hin1II CATG 4 cut(s) 322, 609, 695, 1354
Hin6I GCGC 1 cut(s) 1507
HinP1I GCGC 1 cut(s) 1507
HinfI GANTC 7 cut(s) 194, 200, 434, 891, 1297, 1432, 1520
HphI GGTGA 8 cut(s) 248, 257, 314, 524, 680, 788, 917, 1112
Hpy166II GTNNAC 3 cut(s) 229, 1040, 1335
Hpy188I TCNGA 7 cut(s) 132, 181, 199, 312, 411, 1377, 1405
Hpy188III TCNNGA 5 cut(s) 431, 470, 1076, 1193, 1351
Hpy8I GTNNAC 3 cut(s) 229, 1040, 1335
HpyAV CCTTC 7 cut(s) 203, 541, 667, 1201, 1618, 1672, 1681
HpyCH4III ACNGT 4 cut(s) 685, 905, 1063, 1345
HpyF10VI GCNNNNNNNGC 3 cut(s) 959, 1006, 1103
HpyF3I CTNAG 5 cut(s) 171, 178, 309, 858, 1707
Hsp92II CATG 4 cut(s) 322, 609, 695, 1354
HspAI GCGC 1 cut(s) 1507
Ksp22I TGATCA 2 cut(s) 112, 1032
Kzo9I GATC 4 cut(s) 112, 921, 1032, 1560
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 5 cut(s) 577, 867, 874, 949, 1648
MaeI CTAG 4 cut(s) 107, 189, 438, 1076
MaeIII GTNAC 3 cut(s) 16, 568, 1438
MalI GATC 4 cut(s) 114, 923, 1034, 1562
MboI GATC 4 cut(s) 112, 921, 1032, 1560
MfeI CAATTG 3 cut(s) 819, 1249, 1284
MhlI GDGCHC 2 cut(s) 859, 1214
MlyI GAGTC 2 cut(s) 443, 1441
MmeI TCCRAC 4 cut(s) 155, 268, 366, 1555
MseI TTAA 6 cut(s) 452, 483, 657, 1065, 1122, 1496
MslI CAYNNNNRTG 2 cut(s) 686, 1644
MspA1I CMGCKG 2 cut(s) 206, 1136
MspR9I CCNGG 3 cut(s) 273, 931, 1221
MunI CAATTG 3 cut(s) 819, 1249, 1284
MvaI CCWGG 3 cut(s) 273, 931, 1221
MvnI CGCG 1 cut(s) 1509
MwoI GCNNNNNNNGC 3 cut(s) 959, 1006, 1103
NdeII GATC 4 cut(s) 112, 921, 1032, 1560
NlaIII CATG 4 cut(s) 322, 609, 695, 1354
NlaIV GGNNCC 4 cut(s) 164, 1177, 1212, 1529
NmeAIII GCCGAG 1 cut(s) 959
NmuCI GTSAC 3 cut(s) 16, 568, 1438
NspI RCATGY 3 cut(s) 322, 609, 695
OliI CACNNNNGTG 1 cut(s) 686
PagI TCATGA 1 cut(s) 1350
PasI CCCWGGG 1 cut(s) 272
PceI AGGCCT 1 cut(s) 1583
PciI ACATGT 2 cut(s) 318, 605
PfeI GAWTC 5 cut(s) 194, 200, 891, 1297, 1520
PfoI TCCNGGA 1 cut(s) 1219
PkrI GCNGC 3 cut(s) 49, 751, 985
PleI GAGTC 2 cut(s) 442, 1440
PpsI GAGTC 2 cut(s) 442, 1440
PscI ACATGT 2 cut(s) 318, 605
PsiI TTATAA 1 cut(s) 1667
Psp6I CCWGG 3 cut(s) 271, 929, 1219
PspFI CCCAGC 1 cut(s) 1265
PspGI CCWGG 3 cut(s) 271, 929, 1219
PspN4I GGNNCC 4 cut(s) 164, 1177, 1212, 1529
PspOMI GGGCCC 1 cut(s) 1210
PspPI GGNCC 4 cut(s) 1176, 1210, 1211, 1528
PstNI CAGNNNCTG 1 cut(s) 1006
PvuII CAGCTG 2 cut(s) 206, 1136
RsaI GTAC 2 cut(s) 1004, 1550
RsaNI GTAC 2 cut(s) 1003, 1549
RseI CAYNNNNRTG 2 cut(s) 686, 1644
SaqAI TTAA 6 cut(s) 452, 483, 657, 1065, 1122, 1496
SatI GCNGC 3 cut(s) 48, 750, 984
Sau3AI GATC 4 cut(s) 112, 921, 1032, 1560
Sau96I GGNCC 4 cut(s) 1176, 1210, 1211, 1528
SchI GAGTC 2 cut(s) 443, 1441
ScrFI CCNGG 3 cut(s) 273, 931, 1221
SduI GDGCHC 2 cut(s) 859, 1214
SfaNI GCATC 5 cut(s) 577, 867, 874, 949, 1648
SfcI CTRYAG 2 cut(s) 336, 1045
SinI GGWCC 1 cut(s) 1528
SmiMI CAYNNNNRTG 2 cut(s) 686, 1644
SmlI CTYRAG 3 cut(s) 431, 1193, 1577
SmoI CTYRAG 3 cut(s) 431, 1193, 1577
SpeI ACTAGT 1 cut(s) 106
SseBI AGGCCT 1 cut(s) 1583
SsiI CCGC 4 cut(s) 47, 887, 983, 1014
SspI AATATT 1 cut(s) 1398
SspMI CTAG 4 cut(s) 107, 189, 438, 1076
StuI AGGCCT 1 cut(s) 1583
StyD4I CCNGG 3 cut(s) 271, 929, 1219
StyI CCWWGG 1 cut(s) 1584
TaaI ACNGT 4 cut(s) 685, 905, 1063, 1345
TaqI TCGA 6 cut(s) 38, 70, 598, 1144, 1170, 1485
TatI WGTACW 1 cut(s) 1548
TauI GCSGC 2 cut(s) 50, 986
TfiI GAWTC 5 cut(s) 194, 200, 891, 1297, 1520
Tru1I TTAA 6 cut(s) 452, 483, 657, 1065, 1122, 1496
Tru9I TTAA 6 cut(s) 452, 483, 657, 1065, 1122, 1496
TscAI CASTG 4 cut(s) 231, 421, 688, 1348
TseFI GTSAC 3 cut(s) 16, 568, 1438
TseI GCWGC 1 cut(s) 749
Tsp45I GTSAC 3 cut(s) 16, 568, 1438
TspDTI ATGAA 8 cut(s) 329, 711, 1071, 1220, 1310, 1319, 1529, 1637
TspGWI ACGGA 2 cut(s) 1123, 1448
TspRI CASTG 4 cut(s) 231, 421, 688, 1348
VpaK11BI GGWCC 1 cut(s) 1528
XapI RAATTY 3 cut(s) 454, 517, 699
XbaI TCTAGA 1 cut(s) 1075
XceI RCATGY 3 cut(s) 322, 609, 695
XmiI GTMKAC 1 cut(s) 1334
XspI CTAG 4 cut(s) 107, 189, 438, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.