Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02650 |
| fragaria_vesca | FvH4_6g27990 |
| malus_domestica | MD00G1017000.v1.1 |
| prunus_persica | Prupe.6G365500_v2.0.a1 Prupe.6G365500_v2.0.a1 |
| pyrus_communis | pycom04g22030 pycom12g24250 |
| rosa_chinensis | RchiOBHm_Chr2g0131651 |
| rosa_laevigata | RLG00000019202 |
| rosa_multiflora | Rmu_sc0002589.1_g000013 Rmu_sc0006926.1_g000033 Rmu_sc0042933.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00112740 |
| rosa_rugosa | Rorug02G0298600 Rorug02G0298700 |
| rosa_samantha | Rh2AG351400 Rh2BG358300 Rh2CG336900 Rh2DG375600 |
| rosa_wichuraiana | Rw2G028540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1667 |
| Acc36I | ACCTGC | 1 cut(s) | 1014 |
| AccI | GTMKAC | 1 cut(s) | 1334 |
| AccII | CGCG | 1 cut(s) | 1509 |
| AciI | CCGC | 4 cut(s) | 47, 887, 983, 1014 |
| AclWI | GGATC | 2 cut(s) | 929, 1555 |
| AcsI | RAATTY | 3 cut(s) | 454, 517, 699 |
| AcuI | CTGAAG | 3 cut(s) | 228, 392, 1706 |
| AfaI | GTAC | 2 cut(s) | 1004, 1550 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 278, 563, 1220, 1590 |
| AflIII | ACRYGT | 2 cut(s) | 318, 605 |
| AgsI | TTSAA | 9 cut(s) | 494, 535, 547, 766, 824, 843, 1237, 1321, 1616 |
| AhlI | ACTAGT | 1 cut(s) | 106 |
| AjnI | CCWGG | 3 cut(s) | 271, 929, 1219 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 737, 769 |
| AleI | CACNNNNGTG | 1 cut(s) | 686 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 308, 340 |
| AluBI | AGCT | 9 cut(s) | 29, 175, 206, 220, 749, 953, 1073, 1136, 1673 |
| AluI | AGCT | 9 cut(s) | 29, 175, 206, 220, 749, 953, 1073, 1136, 1673 |
| Alw26I | GTCTC | 2 cut(s) | 405, 1697 |
| AlwI | GGATC | 2 cut(s) | 929, 1555 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1006 |
| Ama87I | CYCGRG | 2 cut(s) | 557, 1656 |
| AoxI | GGCC | 4 cut(s) | 613, 1176, 1210, 1581 |
| ApaI | GGGCCC | 1 cut(s) | 1214 |
| ApeKI | GCWGC | 1 cut(s) | 749 |
| ApoI | RAATTY | 3 cut(s) | 454, 517, 699 |
| AspLEI | GCGC | 1 cut(s) | 1509 |
| AspS9I | GGNCC | 4 cut(s) | 1176, 1210, 1211, 1528 |
| AsuHPI | GGTGA | 8 cut(s) | 248, 257, 314, 524, 680, 788, 917, 1112 |
| AvaI | CYCGRG | 2 cut(s) | 557, 1656 |
| AvaII | GGWCC | 1 cut(s) | 1528 |
| BaeGI | GKGCMC | 1 cut(s) | 1214 |
| BanII | GRGCYC | 2 cut(s) | 859, 1214 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 986, 1018 |
| BbvI | GCAGC | 1 cut(s) | 736 |
| BccI | CCATC | 4 cut(s) | 416, 440, 1166, 1372 |
| BciT130I | CCWGG | 3 cut(s) | 273, 931, 1221 |
| BclI | TGATCA | 2 cut(s) | 112, 1032 |
| BcoDI | GTCTC | 2 cut(s) | 405, 1697 |
| BcuI | ACTAGT | 1 cut(s) | 106 |
| BfaI | CTAG | 4 cut(s) | 107, 189, 438, 1076 |
| BfmI | CTRYAG | 2 cut(s) | 336, 1045 |
| BfuAI | ACCTGC | 1 cut(s) | 1014 |
| BisI | GCNGC | 3 cut(s) | 48, 750, 984 |
| BlsI | GCNGC | 3 cut(s) | 49, 751, 985 |
| Bme1390I | CCNGG | 3 cut(s) | 273, 931, 1221 |
| Bme18I | GGWCC | 1 cut(s) | 1528 |
| BmeT110I | CYCGRG | 2 cut(s) | 557, 1656 |
| BmgT120I | GGNCC | 4 cut(s) | 1176, 1210, 1211, 1528 |
| BmiI | GGNNCC | 4 cut(s) | 164, 1177, 1212, 1529 |
| BmrFI | CCNGG | 3 cut(s) | 273, 931, 1221 |
| BmsI | GCATC | 5 cut(s) | 577, 867, 874, 949, 1648 |
| BpmI | CTGGAG | 1 cut(s) | 1203 |
| BpuEI | CTTGAG | 3 cut(s) | 452, 1214, 1562 |
| BsaJI | CCNNGG | 5 cut(s) | 271, 272, 978, 1459, 1584 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 278, 563, 1220, 1590 |
| Bse1I | ACTGG | 2 cut(s) | 588, 1479 |
| BseBI | CCWGG | 3 cut(s) | 273, 931, 1221 |
| BseDI | CCNNGG | 5 cut(s) | 271, 272, 978, 1459, 1584 |
| BseGI | GGATG | 6 cut(s) | 466, 592, 791, 1060, 1171, 1455 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 278, 563, 1220, 1590 |
| BseMII | CTCAG | 5 cut(s) | 185, 192, 323, 872, 1698 |
| BseNI | ACTGG | 2 cut(s) | 588, 1479 |
| BseRI | GAGGAG | 3 cut(s) | 111, 1397, 1706 |
| BseSI | GKGCMC | 1 cut(s) | 1214 |
| BseXI | GCAGC | 1 cut(s) | 736 |
| BseYI | CCCAGC | 1 cut(s) | 1265 |
| Bsh1236I | CGCG | 1 cut(s) | 1509 |
| BshFI | GGCC | 4 cut(s) | 615, 1178, 1212, 1583 |
| BsiHKCI | CYCGRG | 2 cut(s) | 557, 1656 |
| BslFI | GGGAC | 1 cut(s) | 776 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 278, 563, 1220, 1590 |
| BsmAI | GTCTC | 2 cut(s) | 405, 1697 |
| BsmFI | GGGAC | 1 cut(s) | 776 |
| BsnI | GGCC | 4 cut(s) | 615, 1178, 1212, 1583 |
| BsoBI | CYCGRG | 2 cut(s) | 557, 1656 |
| Bsp120I | GGGCCC | 1 cut(s) | 1210 |
| Bsp1286I | GDGCHC | 2 cut(s) | 859, 1214 |
| Bsp143I | GATC | 4 cut(s) | 112, 921, 1032, 1560 |
| BspACI | CCGC | 4 cut(s) | 47, 887, 983, 1014 |
| BspANI | GGCC | 4 cut(s) | 615, 1178, 1212, 1583 |
| BspCNI | CTCAG | 5 cut(s) | 184, 191, 322, 871, 1699 |
| BspFNI | CGCG | 1 cut(s) | 1509 |
| BspHI | TCATGA | 1 cut(s) | 1350 |
| BspLI | GGNNCC | 4 cut(s) | 164, 1177, 1212, 1529 |
| BspMI | ACCTGC | 1 cut(s) | 1014 |
| BspPI | GGATC | 2 cut(s) | 929, 1555 |
| BsrI | ACTGG | 2 cut(s) | 588, 1479 |
| BssECI | CCNNGG | 5 cut(s) | 271, 272, 978, 1459, 1584 |
| BssMI | GATC | 4 cut(s) | 112, 921, 1032, 1560 |
| BssNAI | GTATAC | 1 cut(s) | 1335 |
| BssT1I | CCWWGG | 1 cut(s) | 1584 |
| Bst1107I | GTATAC | 1 cut(s) | 1335 |
| Bst2UI | CCWGG | 3 cut(s) | 273, 931, 1221 |
| Bst4CI | ACNGT | 4 cut(s) | 685, 905, 1063, 1345 |
| Bst6I | CTCTTC | 5 cut(s) | 351, 408, 620, 1301, 1473 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1006 |
| BstC8I | GCNNGC | 1 cut(s) | 836 |
| BstDEI | CTNAG | 5 cut(s) | 171, 178, 309, 858, 1707 |
| BstDSI | CCRYGG | 1 cut(s) | 1459 |
| BstF5I | GGATG | 6 cut(s) | 466, 592, 791, 1060, 1171, 1455 |
| BstFNI | CGCG | 1 cut(s) | 1509 |
| BstHHI | GCGC | 1 cut(s) | 1509 |
| BstKTI | GATC | 4 cut(s) | 115, 924, 1035, 1563 |
| BstMAI | GTCTC | 2 cut(s) | 405, 1697 |
| BstMBI | GATC | 4 cut(s) | 112, 921, 1032, 1560 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 959, 1006, 1103 |
| BstNI | CCWGG | 3 cut(s) | 273, 931, 1221 |
| BstNSI | RCATGY | 3 cut(s) | 322, 609, 695 |
| BstSCI | CCNGG | 3 cut(s) | 271, 929, 1219 |
| BstSFI | CTRYAG | 2 cut(s) | 336, 1045 |
| BstSLI | GKGCMC | 1 cut(s) | 1214 |
| BstUI | CGCG | 1 cut(s) | 1509 |
| BstV1I | GCAGC | 1 cut(s) | 736 |
| BstZ17I | GTATAC | 1 cut(s) | 1335 |
| BsuRI | GGCC | 4 cut(s) | 615, 1178, 1212, 1583 |
| BtgI | CCRYGG | 1 cut(s) | 1459 |
| BtsCI | GGATG | 6 cut(s) | 466, 592, 791, 1060, 1171, 1455 |
| BtsI | GCAGTG | 1 cut(s) | 421 |
| BtsIMutI | CAGTG | 4 cut(s) | 231, 421, 681, 1341 |
| BveI | ACCTGC | 1 cut(s) | 1014 |
| Cac8I | GCNNGC | 1 cut(s) | 836 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1006 |
| CciI | TCATGA | 1 cut(s) | 1350 |
| CfoI | GCGC | 1 cut(s) | 1509 |
| Cfr13I | GGNCC | 4 cut(s) | 1176, 1210, 1211, 1528 |
| Csp6I | GTAC | 2 cut(s) | 1003, 1549 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 489, 524 |
| CviAII | CATG | 4 cut(s) | 319, 606, 692, 1351 |
| CviQI | GTAC | 2 cut(s) | 1003, 1549 |
| DdeI | CTNAG | 5 cut(s) | 171, 178, 309, 858, 1707 |
| DpnI | GATC | 4 cut(s) | 114, 923, 1034, 1562 |
| DpnII | GATC | 4 cut(s) | 112, 921, 1032, 1560 |
| DraI | TTTAAA | 2 cut(s) | 453, 1497 |
| Eam1104I | CTCTTC | 5 cut(s) | 351, 408, 620, 1301, 1473 |
| EarI | CTCTTC | 5 cut(s) | 351, 408, 620, 1301, 1473 |
| Eco130I | CCWWGG | 1 cut(s) | 1584 |
| Eco147I | AGGCCT | 1 cut(s) | 1583 |
| Eco24I | GRGCYC | 2 cut(s) | 859, 1214 |
| Eco32I | GATATC | 1 cut(s) | 717 |
| Eco47I | GGWCC | 1 cut(s) | 1528 |
| Eco57I | CTGAAG | 3 cut(s) | 228, 392, 1706 |
| Eco88I | CYCGRG | 2 cut(s) | 557, 1656 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1210 |
| EcoRII | CCWGG | 3 cut(s) | 271, 929, 1219 |
| EcoRV | GATATC | 1 cut(s) | 717 |
| EcoT14I | CCWWGG | 1 cut(s) | 1584 |
| EcoT38I | GRGCYC | 2 cut(s) | 859, 1214 |
| ErhI | CCWWGG | 1 cut(s) | 1584 |
| FaeI | CATG | 4 cut(s) | 322, 609, 695, 1354 |
| FaqI | GGGAC | 1 cut(s) | 776 |
| FatI | CATG | 4 cut(s) | 318, 605, 691, 1350 |
| FauI | CCCGC | 2 cut(s) | 880, 1021 |
| FbaI | TGATCA | 2 cut(s) | 112, 1032 |
| FblI | GTMKAC | 1 cut(s) | 1334 |
| Fnu4HI | GCNGC | 3 cut(s) | 48, 750, 984 |
| FokI | GGATG | 6 cut(s) | 453, 599, 798, 1067, 1178, 1442 |
| FriOI | GRGCYC | 2 cut(s) | 859, 1214 |
| Fsp4HI | GCNGC | 3 cut(s) | 48, 750, 984 |
| FspBI | CTAG | 4 cut(s) | 107, 189, 438, 1076 |
| GlaI | GCGC | 1 cut(s) | 1508 |
| GluI | GCNGC | 3 cut(s) | 48, 750, 984 |
| GsaI | CCCAGC | 1 cut(s) | 1269 |
| GsuI | CTGGAG | 1 cut(s) | 1203 |
| HaeIII | GGCC | 4 cut(s) | 615, 1178, 1212, 1583 |
| HhaI | GCGC | 1 cut(s) | 1509 |
| Hin1II | CATG | 4 cut(s) | 322, 609, 695, 1354 |
| Hin6I | GCGC | 1 cut(s) | 1507 |
| HinP1I | GCGC | 1 cut(s) | 1507 |
| HinfI | GANTC | 7 cut(s) | 194, 200, 434, 891, 1297, 1432, 1520 |
| HphI | GGTGA | 8 cut(s) | 248, 257, 314, 524, 680, 788, 917, 1112 |
| Hpy166II | GTNNAC | 3 cut(s) | 229, 1040, 1335 |
| Hpy188I | TCNGA | 7 cut(s) | 132, 181, 199, 312, 411, 1377, 1405 |
| Hpy188III | TCNNGA | 5 cut(s) | 431, 470, 1076, 1193, 1351 |
| Hpy8I | GTNNAC | 3 cut(s) | 229, 1040, 1335 |
| HpyAV | CCTTC | 7 cut(s) | 203, 541, 667, 1201, 1618, 1672, 1681 |
| HpyCH4III | ACNGT | 4 cut(s) | 685, 905, 1063, 1345 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 959, 1006, 1103 |
| HpyF3I | CTNAG | 5 cut(s) | 171, 178, 309, 858, 1707 |
| Hsp92II | CATG | 4 cut(s) | 322, 609, 695, 1354 |
| HspAI | GCGC | 1 cut(s) | 1507 |
| Ksp22I | TGATCA | 2 cut(s) | 112, 1032 |
| Kzo9I | GATC | 4 cut(s) | 112, 921, 1032, 1560 |
| LmnI | GCTCC | 1 cut(s) | 379 |
| Lsp1109I | GCAGC | 1 cut(s) | 736 |
| LweI | GCATC | 5 cut(s) | 577, 867, 874, 949, 1648 |
| MaeI | CTAG | 4 cut(s) | 107, 189, 438, 1076 |
| MaeIII | GTNAC | 3 cut(s) | 16, 568, 1438 |
| MalI | GATC | 4 cut(s) | 114, 923, 1034, 1562 |
| MboI | GATC | 4 cut(s) | 112, 921, 1032, 1560 |
| MfeI | CAATTG | 3 cut(s) | 819, 1249, 1284 |
| MhlI | GDGCHC | 2 cut(s) | 859, 1214 |
| MlyI | GAGTC | 2 cut(s) | 443, 1441 |
| MmeI | TCCRAC | 4 cut(s) | 155, 268, 366, 1555 |
| MseI | TTAA | 6 cut(s) | 452, 483, 657, 1065, 1122, 1496 |
| MslI | CAYNNNNRTG | 2 cut(s) | 686, 1644 |
| MspA1I | CMGCKG | 2 cut(s) | 206, 1136 |
| MspR9I | CCNGG | 3 cut(s) | 273, 931, 1221 |
| MunI | CAATTG | 3 cut(s) | 819, 1249, 1284 |
| MvaI | CCWGG | 3 cut(s) | 273, 931, 1221 |
| MvnI | CGCG | 1 cut(s) | 1509 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 959, 1006, 1103 |
| NdeII | GATC | 4 cut(s) | 112, 921, 1032, 1560 |
| NlaIII | CATG | 4 cut(s) | 322, 609, 695, 1354 |
| NlaIV | GGNNCC | 4 cut(s) | 164, 1177, 1212, 1529 |
| NmeAIII | GCCGAG | 1 cut(s) | 959 |
| NmuCI | GTSAC | 3 cut(s) | 16, 568, 1438 |
| NspI | RCATGY | 3 cut(s) | 322, 609, 695 |
| OliI | CACNNNNGTG | 1 cut(s) | 686 |
| PagI | TCATGA | 1 cut(s) | 1350 |
| PasI | CCCWGGG | 1 cut(s) | 272 |
| PceI | AGGCCT | 1 cut(s) | 1583 |
| PciI | ACATGT | 2 cut(s) | 318, 605 |
| PfeI | GAWTC | 5 cut(s) | 194, 200, 891, 1297, 1520 |
| PfoI | TCCNGGA | 1 cut(s) | 1219 |
| PkrI | GCNGC | 3 cut(s) | 49, 751, 985 |
| PleI | GAGTC | 2 cut(s) | 442, 1440 |
| PpsI | GAGTC | 2 cut(s) | 442, 1440 |
| PscI | ACATGT | 2 cut(s) | 318, 605 |
| PsiI | TTATAA | 1 cut(s) | 1667 |
| Psp6I | CCWGG | 3 cut(s) | 271, 929, 1219 |
| PspFI | CCCAGC | 1 cut(s) | 1265 |
| PspGI | CCWGG | 3 cut(s) | 271, 929, 1219 |
| PspN4I | GGNNCC | 4 cut(s) | 164, 1177, 1212, 1529 |
| PspOMI | GGGCCC | 1 cut(s) | 1210 |
| PspPI | GGNCC | 4 cut(s) | 1176, 1210, 1211, 1528 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1006 |
| PvuII | CAGCTG | 2 cut(s) | 206, 1136 |
| RsaI | GTAC | 2 cut(s) | 1004, 1550 |
| RsaNI | GTAC | 2 cut(s) | 1003, 1549 |
| RseI | CAYNNNNRTG | 2 cut(s) | 686, 1644 |
| SaqAI | TTAA | 6 cut(s) | 452, 483, 657, 1065, 1122, 1496 |
| SatI | GCNGC | 3 cut(s) | 48, 750, 984 |
| Sau3AI | GATC | 4 cut(s) | 112, 921, 1032, 1560 |
| Sau96I | GGNCC | 4 cut(s) | 1176, 1210, 1211, 1528 |
| SchI | GAGTC | 2 cut(s) | 443, 1441 |
| ScrFI | CCNGG | 3 cut(s) | 273, 931, 1221 |
| SduI | GDGCHC | 2 cut(s) | 859, 1214 |
| SfaNI | GCATC | 5 cut(s) | 577, 867, 874, 949, 1648 |
| SfcI | CTRYAG | 2 cut(s) | 336, 1045 |
| SinI | GGWCC | 1 cut(s) | 1528 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 686, 1644 |
| SmlI | CTYRAG | 3 cut(s) | 431, 1193, 1577 |
| SmoI | CTYRAG | 3 cut(s) | 431, 1193, 1577 |
| SpeI | ACTAGT | 1 cut(s) | 106 |
| SseBI | AGGCCT | 1 cut(s) | 1583 |
| SsiI | CCGC | 4 cut(s) | 47, 887, 983, 1014 |
| SspI | AATATT | 1 cut(s) | 1398 |
| SspMI | CTAG | 4 cut(s) | 107, 189, 438, 1076 |
| StuI | AGGCCT | 1 cut(s) | 1583 |
| StyD4I | CCNGG | 3 cut(s) | 271, 929, 1219 |
| StyI | CCWWGG | 1 cut(s) | 1584 |
| TaaI | ACNGT | 4 cut(s) | 685, 905, 1063, 1345 |
| TaqI | TCGA | 6 cut(s) | 38, 70, 598, 1144, 1170, 1485 |
| TatI | WGTACW | 1 cut(s) | 1548 |
| TauI | GCSGC | 2 cut(s) | 50, 986 |
| TfiI | GAWTC | 5 cut(s) | 194, 200, 891, 1297, 1520 |
| Tru1I | TTAA | 6 cut(s) | 452, 483, 657, 1065, 1122, 1496 |
| Tru9I | TTAA | 6 cut(s) | 452, 483, 657, 1065, 1122, 1496 |
| TscAI | CASTG | 4 cut(s) | 231, 421, 688, 1348 |
| TseFI | GTSAC | 3 cut(s) | 16, 568, 1438 |
| TseI | GCWGC | 1 cut(s) | 749 |
| Tsp45I | GTSAC | 3 cut(s) | 16, 568, 1438 |
| TspDTI | ATGAA | 8 cut(s) | 329, 711, 1071, 1220, 1310, 1319, 1529, 1637 |
| TspGWI | ACGGA | 2 cut(s) | 1123, 1448 |
| TspRI | CASTG | 4 cut(s) | 231, 421, 688, 1348 |
| VpaK11BI | GGWCC | 1 cut(s) | 1528 |
| XapI | RAATTY | 3 cut(s) | 454, 517, 699 |
| XbaI | TCTAGA | 1 cut(s) | 1075 |
| XceI | RCATGY | 3 cut(s) | 322, 609, 695 |
| XmiI | GTMKAC | 1 cut(s) | 1334 |
| XspI | CTAG | 4 cut(s) | 107, 189, 438, 1076 |