Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011325

Physical Location & Seq

Genomic Coordinates Forward (+)

33306878 .. 33310337

Gene Structure 3460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0298700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTTCTTGCTGGGCCTGTGGTTAGTTTGGTTTAGCCACTATCATAATACGTACTTAATTGGAGATGATGAGCACTGCTACAGTGACAATCATGTGTCAAACATTGAAGGTGGTTCCTATGCTAAGTGCATTGATTTGTCAAAAGACAAGCAACCAGATATTTGGAATTCTATCAAATTTGAGACTGGTAAAAAGATGATACTATGGACCATTGTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

73

Amino Acids

8.58

Weight (kDa)

5.65

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPCK_ATP	PF01293	12 - 62	9.8e-17	Phosphoenolpyruvate carboxykinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02650
fragaria_vesca	FvH4_6g27990
malus_domestica	MD00G1017000.v1.1
prunus_persica	Prupe.6G365500_v2.0.a1 Prupe.6G365500_v2.0.a1
pyrus_communis	pycom04g22030 pycom12g24250
rosa_chinensis	RchiOBHm_Chr2g0131651
rosa_laevigata	RLG00000019202
rosa_multiflora	Rmu_sc0002589.1_g000013 Rmu_sc0006926.1_g000033 Rmu_sc0042933.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112740
rosa_rugosa	Rorug02G0298600 Rorug02G0298700
rosa_samantha	Rh2AG351400 Rh2BG358300 Rh2CG336900 Rh2DG375600
rosa_wichuraiana	Rw2G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	166, 176
AfaI	GTAC	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	107
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	13
ApoI	RAATTY	2 cut(s)	166, 176
AspS9I	GGNCC	2 cut(s)	13, 207
AvaII	GGWCC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	13, 207
BmiI	GGNNCC	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	123
BstMAI	GTCTC	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	79
BstSNI	TACGTA	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	73, 88
Cfr13I	GGNCC	2 cut(s)	13, 207
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	2 cut(s)	15, 36
CviKI_1	RGCY	2 cut(s)	15, 36
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	123
Eco105I	TACGTA	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	207
EcoRI	GAATTC	1 cut(s)	166
FaeI	CATG	1 cut(s)	95
FaiI	YATR	4 cut(s)	45, 93, 120, 205
FatI	CATG	1 cut(s)	91
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	95
LpnPI	CCDG	3 cut(s)	29, 168, 171
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	3 cut(s)	57, 166, 176
MseI	TTAA	2 cut(s)	56, 220
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	13, 207
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	56, 220
Sau96I	GGNCC	2 cut(s)	13, 207
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	2 cut(s)	53, 112
SfcI	CTRYAG	1 cut(s)	79
SgeI	CNNG	7 cut(s)	19, 23, 28, 104, 160, 167, 198
SinI	GGWCC	1 cut(s)	207
SnaBI	TACGTA	1 cut(s)	51
Sse9I	AATT	3 cut(s)	57, 166, 176
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	1 cut(s)	53
TasI	AATT	3 cut(s)	57, 166, 176
Tru1I	TTAA	2 cut(s)	56, 220
Tru9I	TTAA	2 cut(s)	56, 220
TscAI	CASTG	2 cut(s)	80, 88
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspRI	CASTG	2 cut(s)	80, 88
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	2 cut(s)	166, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.