Rroxscaffold_2G00112740

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011325
Physical Location & Seq
Forward (+)
38066258 .. 38067982
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112740.1

Sequence Viewer

Length: 1725 bp
ATGTGGAGGTCAGTCGCGGCAAGATCATCAAGAGCTTCTCTTTCGTTAAAGGCAGCGCACAACTTCGGTGCAACCCAAAACCCCAAGGTACTCTCCTCTAAAACCCTAGTCCCACTTGCCCAATCTTCTCATTTCCCCGCTAGATCCCCTCCCTGCCAAAACCCCAGGTTCTTCTCCCAGGTCTCAGAAGACCTTAGTTATTCTGATACCGCAGAACCACCACCACCGCCGCCGTTTTCAGAGGCTGAAAATGACGACGCCCAGATGGACGGTTTTGCCCCTGGGGATGGGGTTGATGGGGTTTCGGAGCAACTGGGTTGTGATGAAATTGGGGAGTTGGGGGAAGAGGGAGAAGAGGTTCATGAGATTGATGTGGAGAAATTGGAGGGTTTGTTGTCTCTGCTTCATAGTAGTGCTGATGGGTCTCTTGAGTCTAGTTTCAGGGATTTGGATTTGACTCTACATGAAGAATTTGTGGTTAGAGTTCTTGAAACCCCACTTATTGTGGGGGAGAATTTGATAAGGTTCTTCAAGTGGGGTTTGAAGGAGAAACCCGAATTTAGAGTCAATAAGCAGATATTGGATGCTCTTGTGATTGCAATGTGTGGTGAAGTTGTTAACAAGAATGATATGTATTCTTTGTGGGATTTGGTTAAGGGGGTTGGTGAGAAGGAGGGGAGTTTGTTGAATGTGGATATTCTCAATGTGTTGATGTCTTCGTTCTCGAAGTTGGGTGAAGGGAAAGCTGCTTTGGAGGTGTTGAACAAGTTTGATGATTTTGGATGCGTCCCCAGTGCGGATTCATATTACTTTGCGATTGAGGGGCTTTGCAAGAGTTCGGATTTTGATTGTGCTAAGGCTGTGTGTGAGAAGATGATTGGTGCAAGAAGCTCGCCGGATGCTGAAAAGGTTGGTAGGATTGTATCGTGGTTCTGCAATGCTGGAATGGCGAAAGAGGCCCATTCGGTGTATTTGTTGTTGAAGGAGGAGAAGCAGTGCCGGCCTCGCTCATCTGTTAATTTTTTGATCGGTTCACTTAGTAGGGAGGATGAAAATGTCAAATTAGCTCTAGACTTGCTAGAGGATATTGATGGTGAAGCACGGAAATATGCGATAAAGCCCTTTTCTGCTGTTGTTCAAGGGTTATGTAGGATAAAGGATGTTGCTGGGGCAAGAAAATTGCTTCTTGAGATGGCAAAAAAGGGTCCACCTCCTGGAAATGCAGTTTTTAATTTGGTTATCAATGGCTATTCTAAGGCTGGGGATATGCAAGATGCGATAGAGATGATGAAGCTGATGGAGAGCAGGGGCTTGAAACCAGATGTCTTTACTTACACTGTTATTATGAGTGGTTATGCAAAAGGTGGTCAGATGGAGGAGGCATGCAATATCTTATCTGAAGCCAAAAAGAAGCATGCTAAATTGACTCCAGTGACTTATCATACACTCATCTCCAGCTTTTGCAAACTGGAACAGTTTGACAAGGCTTTGGAGTTGTTTCATGAGATGAAAGATTATGGGGTCCAACCCACGACTGATGAGTACAACAAGTTGATCCAATCTCTTTGCCTGAAAGCACTAGATTGGGAAACGTCAGAGAAACTGCTGGAAGAAATGAAAGATAGCGGGTTATATCTTAATGGAATTACGAGAGGTCTCATAAGAGCAGTCAAGGAACTGCAGACGGAGAAAGTAGAGACTGAGAAAATAGTTGCAGAAGCATAA

Protein Analysis

574

Amino Acids

63.35

Weight (kDa)

4.99

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 379 - 520 4.9e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 407 - 454 1.1e-14 PPR repeat family
PPR PF01535 409 - 438 8.9e-07 PPR repeat
PPR_3 PF13812 433 - 487 2.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 436 - 467 2.8e-07 PPR repeat
PPR_2 PF13041 446 - 489 8.1e-08 PPR repeat family
TPR_24 PF23276 456 - 543 7.3e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 464 - 520 5.8e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 474 - 504 3.8e-08 PPR repeat
PPR_2 PF13041 478 - 523 1.1e-11 PPR repeat family
PPR PF01535 478 - 508 4.7e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1214
AccII CGCG 1 cut(s) 17
AciI CCGC 7 cut(s) 17, 138, 210, 227, 230, 797, 1626
AclWI GGATC 2 cut(s) 138, 1549
AcsI RAATTY 3 cut(s) 470, 514, 557
AcuI CTGAAG 1 cut(s) 1419
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 2 cut(s) 90, 1544
AfiI CCNNNNNNNGG 3 cut(s) 287, 796, 1214
AgsI TTSAA 8 cut(s) 491, 532, 544, 688, 763, 982, 1139, 1315
AjnI CCWGG 4 cut(s) 164, 177, 280, 1213
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
AluBI AGCT 6 cut(s) 35, 746, 891, 1067, 1294, 1458
AluI AGCT 6 cut(s) 35, 746, 891, 1067, 1294, 1458
Alw26I GTCTC 5 cut(s) 187, 402, 429, 1661, 1691
AlwI GGATC 2 cut(s) 138, 1549
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 2 cut(s) 957, 1001
ApeKI GCWGC 2 cut(s) 53, 746
ApoI RAATTY 3 cut(s) 470, 514, 557
ArsI GACNNNNNNTTYG 2 cut(s) 549, 581
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 3 cut(s) 958, 1205, 1522
AsuHPI GGTGA 4 cut(s) 620, 677, 746, 1106
AvaII GGWCC 2 cut(s) 1205, 1522
BbsI GAAGAC 2 cut(s) 195, 708
BbvI GCAGC 2 cut(s) 65, 733
BccI CCATC 8 cut(s) 259, 281, 290, 413, 1085, 1186, 1291, 1366
BceAI ACGGC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 873, 907
BciT130I CCWGG 4 cut(s) 166, 179, 282, 1215
BcoDI GTCTC 5 cut(s) 187, 402, 429, 1661, 1691
BfaI CTAG 6 cut(s) 107, 141, 435, 1070, 1079, 1580
BfmI CTRYAG 1 cut(s) 1679
BisI GCNGC 4 cut(s) 18, 54, 230, 747
BlsI GCNGC 4 cut(s) 19, 55, 231, 748
Bme1390I CCNGG 4 cut(s) 166, 179, 282, 1215
Bme18I GGWCC 2 cut(s) 1205, 1522
BmgT120I GGNCC 3 cut(s) 958, 1205, 1522
BmiI GGNNCC 2 cut(s) 1206, 1523
BmrFI CCNGG 4 cut(s) 166, 179, 282, 1215
BmrI ACTGGG 2 cut(s) 323, 786
BmsI GCATC 4 cut(s) 574, 773, 889, 1264
BmuI ACTGGG 2 cut(s) 323, 786
BpiI GAAGAC 2 cut(s) 195, 708
BpmI CTGGAG 2 cut(s) 1413, 1438
Bpu10I CCTNAGC 1 cut(s) 855
BpuEI CTTGAG 2 cut(s) 449, 1208
BsaHI GRCGYC 1 cut(s) 258
BsaI GGTCTC 3 cut(s) 187, 429, 1661
BsaJI CCNNGG 5 cut(s) 84, 164, 177, 280, 281
BsaXI ACNNNNNCTCC 6 cut(s) 342, 372, 377, 407, 980, 1010
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 796, 1214
Bse118I RCCGGY 1 cut(s) 999
Bse1I ACTGG 4 cut(s) 318, 792, 1430, 1473
Bse3DI GCAATG 2 cut(s) 606, 943
BseBI CCWGG 4 cut(s) 166, 179, 282, 1215
BseDI CCNNGG 5 cut(s) 84, 164, 177, 280, 281
BseGI GGATG 6 cut(s) 292, 589, 788, 904, 1054, 1165
BseLI CCNNNNNNNGG 3 cut(s) 287, 796, 1214
BseMI GCAATG 2 cut(s) 606, 943
BseMII CTCAG 2 cut(s) 198, 1692
BseNI ACTGG 4 cut(s) 318, 792, 1430, 1473
BseRI GAGGAG 3 cut(s) 85, 1001, 1391
BseXI GCAGC 2 cut(s) 65, 733
BseYI CCCAGC 2 cut(s) 1166, 1259
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 959, 1003
BsiSI CCGG 2 cut(s) 896, 1000
BslFI GGGAC 2 cut(s) 95, 773
BslI CCNNNNNNNGG 3 cut(s) 287, 796, 1214
BsmAI GTCTC 5 cut(s) 187, 402, 429, 1661, 1691
BsmFI GGGAC 2 cut(s) 95, 773
BsnI GGCC 2 cut(s) 959, 1003
Bso31I GGTCTC 3 cut(s) 187, 429, 1661
Bsp143I GATC 4 cut(s) 23, 143, 1026, 1554
BspACI CCGC 7 cut(s) 17, 138, 210, 227, 230, 797, 1626
BspANI GGCC 2 cut(s) 959, 1003
BspCNI CTCAG 2 cut(s) 197, 1693
BspFNI CGCG 1 cut(s) 17
BspHI TCATGA 2 cut(s) 361, 1501
BspLI GGNNCC 2 cut(s) 1206, 1523
BspMAI CTGCAG 1 cut(s) 1683
BspPI GGATC 2 cut(s) 138, 1549
BspTNI GGTCTC 3 cut(s) 187, 429, 1661
BsrDI GCAATG 2 cut(s) 606, 943
BsrFI RCCGGY 1 cut(s) 999
BsrI ACTGG 4 cut(s) 318, 792, 1430, 1473
BssAI RCCGGY 1 cut(s) 999
BssECI CCNNGG 5 cut(s) 84, 164, 177, 280, 281
BssMI GATC 4 cut(s) 23, 143, 1026, 1554
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 4 cut(s) 166, 179, 282, 1215
Bst4CI ACNGT 3 cut(s) 272, 1339, 1476
Bst6I CTCTTC 2 cut(s) 339, 348
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 4 cut(s) 893, 1001, 1384, 1416
BstDEI CTNAG 6 cut(s) 184, 194, 855, 1037, 1254, 1701
BstF5I GGATG 6 cut(s) 292, 589, 788, 904, 1054, 1165
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 4 cut(s) 26, 146, 1029, 1557
BstMAI GTCTC 5 cut(s) 187, 402, 429, 1661, 1691
BstMBI GATC 4 cut(s) 23, 143, 1026, 1554
BstMWI GCNNNNNNNGC 4 cut(s) 947, 956, 1000, 1005
BstNI CCWGG 4 cut(s) 166, 179, 282, 1215
BstNSI RCATGY 2 cut(s) 1386, 1418
BstSCI CCNGG 4 cut(s) 164, 177, 280, 1213
BstSFI CTRYAG 1 cut(s) 1679
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 65, 733
BstV2I GAAGAC 2 cut(s) 195, 708
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 2 cut(s) 959, 1003
BtsCI GGATG 6 cut(s) 292, 589, 788, 904, 1054, 1165
BtsI GCAGTG 1 cut(s) 1001
BtsIMutI CAGTG 4 cut(s) 799, 1001, 1335, 1437
Cac8I GCNNGC 4 cut(s) 893, 1001, 1384, 1416
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 2 cut(s) 361, 1501
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 999
Cfr13I GGNCC 3 cut(s) 958, 1205, 1522
CseI GACGC 2 cut(s) 266, 775
Csp6I GTAC 2 cut(s) 89, 1543
CviAII CATG 5 cut(s) 362, 464, 1383, 1415, 1502
CviQI GTAC 2 cut(s) 89, 1543
DdeI CTNAG 6 cut(s) 184, 194, 855, 1037, 1254, 1701
DpnI GATC 4 cut(s) 25, 145, 1028, 1556
DpnII GATC 4 cut(s) 23, 143, 1026, 1554
Eam1104I CTCTTC 2 cut(s) 339, 348
EarI CTCTTC 2 cut(s) 339, 348
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 3 cut(s) 187, 429, 1661
Eco47I GGWCC 2 cut(s) 1205, 1522
Eco57I CTGAAG 1 cut(s) 1419
EcoRII CCWGG 4 cut(s) 164, 177, 280, 1213
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 5 cut(s) 365, 467, 1386, 1418, 1505
FaqI GGGAC 2 cut(s) 95, 773
FatI CATG 5 cut(s) 361, 463, 1382, 1414, 1501
FauI CCCGC 2 cut(s) 145, 1619
Fnu4HI GCNGC 4 cut(s) 18, 54, 230, 747
FokI GGATG 6 cut(s) 299, 596, 795, 911, 1061, 1172
Fsp4HI GCNGC 4 cut(s) 18, 54, 230, 747
FspBI CTAG 6 cut(s) 107, 141, 435, 1070, 1079, 1580
GlaI GCGC 1 cut(s) 57
GluI GCNGC 4 cut(s) 18, 54, 230, 747
GsaI CCCAGC 2 cut(s) 1170, 1263
GsuI CTGGAG 2 cut(s) 1413, 1438
HaeIII GGCC 2 cut(s) 959, 1003
HapII CCGG 2 cut(s) 896, 1000
HgaI GACGC 2 cut(s) 266, 775
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 5 cut(s) 365, 467, 1386, 1418, 1505
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 5 cut(s) 431, 457, 564, 800, 1426
HpaI GTTAAC 1 cut(s) 619
HpaII CCGG 2 cut(s) 896, 1000
HphI GGTGA 4 cut(s) 620, 677, 746, 1106
Hpy166II GTNNAC 3 cut(s) 619, 1034, 1208
Hpy188I TCNGA 8 cut(s) 187, 205, 241, 307, 841, 1371, 1399, 1597
Hpy188III TCNNGA 8 cut(s) 30, 362, 428, 488, 724, 1070, 1187, 1502
Hpy8I GTNNAC 3 cut(s) 619, 1034, 1208
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 4 cut(s) 538, 664, 731, 976
HpyCH4III ACNGT 3 cut(s) 272, 1339, 1476
HpyCH4IV ACGT 1 cut(s) 1592
HpyF10VI GCNNNNNNNGC 4 cut(s) 947, 956, 1000, 1005
HpyF3I CTNAG 6 cut(s) 184, 194, 855, 1037, 1254, 1701
HpySE526I ACGT 1 cut(s) 1592
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 5 cut(s) 365, 467, 1386, 1418, 1505
HspAI GCGC 1 cut(s) 56
KroI GCCGGC 1 cut(s) 999
KroNI GCCGGC 1 cut(s) 1001
KspAI GTTAAC 1 cut(s) 619
Kzo9I GATC 4 cut(s) 23, 143, 1026, 1554
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 2 cut(s) 65, 733
LweI GCATC 4 cut(s) 574, 773, 889, 1264
MaeI CTAG 6 cut(s) 107, 141, 435, 1070, 1079, 1580
MaeII ACGT 1 cut(s) 1592
MaeIII GTNAC 1 cut(s) 1432
MalI GATC 4 cut(s) 25, 145, 1028, 1556
MboI GATC 4 cut(s) 23, 143, 1026, 1554
MflI RGATCY 1 cut(s) 143
MlyI GAGTC 4 cut(s) 440, 451, 573, 1420
MmeI TCCRAC 1 cut(s) 1549
MroNI GCCGGC 1 cut(s) 999
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 6 cut(s) 47, 618, 654, 1017, 1230, 1638
MslI CAYNNNNRTG 1 cut(s) 411
MspI CCGG 2 cut(s) 896, 1000
MspR9I CCNGG 4 cut(s) 166, 179, 282, 1215
MvaI CCWGG 4 cut(s) 166, 179, 282, 1215
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 947, 956, 1000, 1005
NaeI GCCGGC 1 cut(s) 1001
NdeII GATC 4 cut(s) 23, 143, 1026, 1554
NgoMIV GCCGGC 1 cut(s) 999
NlaIII CATG 5 cut(s) 365, 467, 1386, 1418, 1505
NlaIV GGNNCC 2 cut(s) 1206, 1523
NmuCI GTSAC 1 cut(s) 1432
NspI RCATGY 2 cut(s) 1386, 1418
PaeI GCATGC 2 cut(s) 1386, 1418
PagI TCATGA 2 cut(s) 361, 1501
PasI CCCWGGG 1 cut(s) 281
PdiI GCCGGC 1 cut(s) 1001
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 800
PflMI CCANNNNNTGG 1 cut(s) 1214
PfoI TCCNGGA 1 cut(s) 1213
PkrI GCNGC 4 cut(s) 19, 55, 231, 748
PleI GAGTC 4 cut(s) 439, 451, 572, 1420
PpsI GAGTC 4 cut(s) 439, 451, 572, 1420
Psp6I CCWGG 4 cut(s) 164, 177, 280, 1213
PspFI CCCAGC 2 cut(s) 1166, 1259
PspGI CCWGG 4 cut(s) 164, 177, 280, 1213
PspN4I GGNNCC 2 cut(s) 1206, 1523
PspPI GGNCC 3 cut(s) 958, 1205, 1522
PstI CTGCAG 1 cut(s) 1683
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 143
RsaI GTAC 2 cut(s) 90, 1544
RsaNI GTAC 2 cut(s) 89, 1543
RseI CAYNNNNRTG 1 cut(s) 411
SaqAI TTAA 6 cut(s) 47, 618, 654, 1017, 1230, 1638
SatI GCNGC 4 cut(s) 18, 54, 230, 747
Sau3AI GATC 4 cut(s) 23, 143, 1026, 1554
Sau96I GGNCC 3 cut(s) 958, 1205, 1522
SchI GAGTC 4 cut(s) 440, 451, 573, 1420
ScrFI CCNGG 4 cut(s) 166, 179, 282, 1215
SfaNI GCATC 4 cut(s) 574, 773, 889, 1264
SfcI CTRYAG 1 cut(s) 1679
SinI GGWCC 2 cut(s) 1205, 1522
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 428, 1187
SmoI CTYRAG 2 cut(s) 428, 1187
SphI GCATGC 2 cut(s) 1386, 1418
SsiI CCGC 7 cut(s) 17, 138, 210, 227, 230, 797, 1626
SspMI CTAG 6 cut(s) 107, 141, 435, 1070, 1079, 1580
StyD4I CCNGG 4 cut(s) 164, 177, 280, 1213
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 272, 1339, 1476
TaiI ACGT 1 cut(s) 1595
TaqI TCGA 1 cut(s) 725
TatI WGTACW 1 cut(s) 1542
TauI GCSGC 2 cut(s) 20, 232
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 6 cut(s) 47, 618, 654, 1017, 1230, 1638
Tru9I TTAA 6 cut(s) 47, 618, 654, 1017, 1230, 1638
TscAI CASTG 4 cut(s) 799, 1001, 1342, 1437
TseFI GTSAC 1 cut(s) 1432
TseI GCWGC 2 cut(s) 53, 746
Tsp45I GTSAC 1 cut(s) 1432
TspGWI ACGGA 2 cut(s) 1117, 1700
TspRI CASTG 4 cut(s) 799, 1001, 1342, 1437
Van91I CCANNNNNTGG 1 cut(s) 1214
VpaK11BI GGWCC 2 cut(s) 1205, 1522
XapI RAATTY 3 cut(s) 470, 514, 557
XbaI TCTAGA 1 cut(s) 1069
XceI RCATGY 2 cut(s) 1386, 1418
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 6 cut(s) 107, 141, 435, 1070, 1079, 1580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.