Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011325

Physical Location & Seq

Genomic Coordinates Reverse (-)

44561787 .. 44566244

Gene Structure 4458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG336900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTGTGGTGAAGTTGTTACCAAGAAAGATATGTATTCTTTGTGGGATTTGGTTAAGGGGGTTGGTGAGAAGGAGGGGAGTTTGTTGAATGTGGATATTCTCAATGTGTTGATGTCTTCGTTCGCGAAATTGGGTGAAGGGAAAGCTGCTTTGGAGGTGTTGAACAAGTTTGATGATTTTGGATGCGTCCCCAATGCGGATTCATATTACATTGCGATTGAGGGGCTTTGCAGGAGTTCGGATTTTGATTGTGCTAAGTCTGTTTCGGAGAAGATGATTTGTGCAAGAAGCTCGCCGGATGCTGAAAAGGTTGGTAGGATCGTATCTTGGTTCTGCAAGGCTGGAATGGCGAAAGAGGCCCATTCAGTGTATTTGTTGTTGAAGGAGGAGAAGCAGTGCCGACCTCGCTCATCTGTTCATTTTTTGATCCGGTCACTTAGTAGGGAGGATGAGAATGTCAAATTAGCTCTAGACTTGCTAGAGGATATTGATGGTGAAGCACGGAAATATGCGATAAAGCCCTTTTCTGCTGTTGTTCAAGGGTTATGTAGGATAAAGGATGTTGCTGGGGCAAGAAAATTGCTTCTTGAGATGGCAAAAAAGGGTCCACCTCCTGGAAATGCAGTTTTTAATTCGGTTATCAATGGCTATTCTAAGGCTGGGGATATGCAAGATGCGATAGAGATGATGAAGCTGATGGAGAGTAGGGGCTTGAAACCAGATGTCTTTACGTACACTGTTATTATGAGTGGTTATGCAAAAGGTGGTCAGATGGAGGAGGCATGCAATATCTTATCTGAAGCCAAAAAGAAGCATGCTAAATTGACTCCAGTGACTTATCATACACTCATCTCCAGCTTTTGCAAACTGGAACAGTTTGACAAGGCTTTGGAGTTGTTTCATGAGATGAAAGATTATGGGGTCCAACCCACGACTGATGAGTACAACAAGTTGATCCAATCTCTTTGCCTGAAAGCACTAGATTGGGAAACAAGCATAAATGATGTTATATACACATGTAAAGAAATTTATAGGATCTTGGGACAGAGGGTCTCATGTGAAGCTGTGATAGAGATCAAAAGAAAAACGGGTGCATTGGAGACATCAAGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

371

Amino Acids

41.43

Weight (kDa)

6.94

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	30 - 78	5.3e-07	PPR repeat family
PPR_long	PF17177	184 - 320	5.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	194 - 252	1.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	207 - 254	2.1e-15	PPR repeat family
PPR	PF01535	209 - 238	1e-07	PPR repeat
PPR_3	PF13812	233 - 287	1.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	236 - 267	1.6e-07	PPR repeat
PPR_2	PF13041	242 - 289	8.8e-11	PPR repeat family
PPR_3	PF13812	264 - 320	3.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	274 - 304	2.2e-08	PPR repeat
PPR_2	PF13041	278 - 323	6e-12	PPR repeat family
PPR	PF01535	278 - 308	2.7e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02650
fragaria_vesca	FvH4_6g27990
malus_domestica	MD00G1017000.v1.1
prunus_persica	Prupe.6G365500_v2.0.a1 Prupe.6G365500_v2.0.a1
pyrus_communis	pycom04g22030 pycom12g24250
rosa_chinensis	RchiOBHm_Chr2g0131651
rosa_laevigata	RLG00000019202
rosa_multiflora	Rmu_sc0002589.1_g000013 Rmu_sc0006926.1_g000033 Rmu_sc0042933.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112740
rosa_rugosa	Rorug02G0298600 Rorug02G0298700
rosa_samantha	Rh2AG351400 Rh2BG358300 Rh2CG336900 Rh2DG375600
rosa_wichuraiana	Rw2G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	4 cut(s)	326, 421, 949, 1043
AcsI	RAATTY	1 cut(s)	1026
AcuI	CTGAAG	1 cut(s)	819
AfaI	GTAC	2 cut(s)	734, 944
AfiI	CCNNNNNNNGG	2 cut(s)	196, 614
AflIII	ACRYGT	1 cut(s)	1016
AgsI	TTSAA	5 cut(s)	88, 163, 382, 539, 715
AhdI	GACNNNNNGTC	1 cut(s)	1049
AjnI	CCWGG	1 cut(s)	613
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	6 cut(s)	146, 291, 467, 694, 858, 1064
AluI	AGCT	6 cut(s)	146, 291, 467, 694, 858, 1064
Alw26I	GTCTC	2 cut(s)	1057, 1094
AlwI	GGATC	4 cut(s)	326, 421, 949, 1043
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	1026
AspS9I	GGNCC	3 cut(s)	358, 605, 922
AsuHPI	GGTGA	4 cut(s)	20, 77, 146, 506
AvaII	GGWCC	2 cut(s)	605, 922
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	5 cut(s)	485, 586, 691, 766, 1104
BcgI	CGANNNNNNTGC	2 cut(s)	273, 307
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	2 cut(s)	1057, 1094
BfaI	CTAG	3 cut(s)	470, 479, 980
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	2 cut(s)	605, 922
BmeRI	GACNNNNNGTC	1 cut(s)	1049
BmgT120I	GGNCC	3 cut(s)	358, 605, 922
BmiI	GGNNCC	2 cut(s)	606, 923
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	3 cut(s)	173, 289, 664
BpiI	GAAGAC	1 cut(s)	108
BpmI	CTGGAG	2 cut(s)	813, 838
BpuEI	CTTGAG	1 cut(s)	608
BsaAI	YACGTR	1 cut(s)	732
BsaBI	GATNNNNATC	1 cut(s)	1073
BsaI	GGTCTC	1 cut(s)	1057
BsaWI	WCCGGW	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 614
Bse1I	ACTGG	2 cut(s)	830, 873
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	1073
BseBI	CCWGG	1 cut(s)	615
BseGI	GGATG	4 cut(s)	188, 304, 454, 565
BseJI	GATNNNNATC	1 cut(s)	1073
BseLI	CCNNNNNNNGG	2 cut(s)	196, 614
BseMI	GCAATG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	830, 873
BseRI	GAGGAG	2 cut(s)	401, 791
BseXI	GCAGC	1 cut(s)	133
BseYI	CCCAGC	2 cut(s)	566, 659
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	296, 430
BslFI	GGGAC	2 cut(s)	173, 1056
BslI	CCNNNNNNNGG	2 cut(s)	196, 614
BsmAI	GTCTC	2 cut(s)	1057, 1094
BsmFI	GGGAC	2 cut(s)	173, 1056
BsnI	GGCC	1 cut(s)	359
Bso31I	GGTCTC	1 cut(s)	1057
Bsp143I	GATC	5 cut(s)	318, 426, 954, 1035, 1074
Bsp68I	TCGCGA	1 cut(s)	125
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	901
BspLI	GGNNCC	2 cut(s)	606, 923
BspPI	GGATC	4 cut(s)	326, 421, 949, 1043
BspTNI	GGTCTC	1 cut(s)	1057
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	830, 873
BssMI	GATC	5 cut(s)	318, 426, 954, 1035, 1074
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	2 cut(s)	739, 876
BstBAI	YACGTR	1 cut(s)	732
BstC8I	GCNNGC	3 cut(s)	293, 784, 816
BstDEI	CTNAG	3 cut(s)	255, 437, 654
BstF5I	GGATG	4 cut(s)	188, 304, 454, 565
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	5 cut(s)	321, 429, 957, 1038, 1077
BstMAI	GTCTC	2 cut(s)	1057, 1094
BstMBI	GATC	5 cut(s)	318, 426, 954, 1035, 1074
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 356, 405
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	3 cut(s)	786, 818, 1020
BstSCI	CCNGG	1 cut(s)	613
BstSNI	TACGTA	1 cut(s)	732
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	1035
BstYI	RGATCY	1 cut(s)	1035
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	4 cut(s)	188, 304, 454, 565
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	4 cut(s)	372, 401, 735, 837
BtuMI	TCGCGA	1 cut(s)	125
Cac8I	GCNNGC	3 cut(s)	293, 784, 816
CciI	TCATGA	1 cut(s)	901
Cfr13I	GGNCC	3 cut(s)	358, 605, 922
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	733, 943
CviAII	CATG	5 cut(s)	783, 815, 902, 1017, 1056
CviQI	GTAC	2 cut(s)	733, 943
DdeI	CTNAG	3 cut(s)	255, 437, 654
DpnI	GATC	5 cut(s)	320, 428, 956, 1037, 1076
DpnII	GATC	5 cut(s)	318, 426, 954, 1035, 1074
DriI	GACNNNNNGTC	1 cut(s)	1049
Eam1105I	GACNNNNNGTC	1 cut(s)	1049
Eco105I	TACGTA	1 cut(s)	732
Eco31I	GGTCTC	1 cut(s)	1057
Eco47I	GGWCC	2 cut(s)	605, 922
Eco57I	CTGAAG	1 cut(s)	819
EcoRII	CCWGG	1 cut(s)	613
FaeI	CATG	5 cut(s)	786, 818, 905, 1020, 1059
FaqI	GGGAC	2 cut(s)	173, 1056
FatI	CATG	5 cut(s)	782, 814, 901, 1016, 1055
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	4 cut(s)	195, 311, 461, 572
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	3 cut(s)	470, 479, 980
GluI	GCNGC	1 cut(s)	147
GsaI	CCCAGC	2 cut(s)	570, 663
GsuI	CTGGAG	2 cut(s)	813, 838
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	2 cut(s)	296, 430
HgaI	GACGC	1 cut(s)	175
Hin1II	CATG	5 cut(s)	786, 818, 905, 1020, 1059
HinfI	GANTC	2 cut(s)	200, 826
HpaII	CCGG	2 cut(s)	296, 430
HphI	GGTGA	4 cut(s)	20, 77, 146, 506
Hpy166II	GTNNAC	2 cut(s)	608, 735
Hpy188I	TCNGA	4 cut(s)	241, 268, 771, 799
Hpy188III	TCNNGA	5 cut(s)	124, 470, 587, 902, 1107
Hpy8I	GTNNAC	2 cut(s)	608, 735
HpyAV	CCTTC	3 cut(s)	64, 131, 376
HpyCH4III	ACNGT	2 cut(s)	739, 876
HpyCH4IV	ACGT	1 cut(s)	731
HpyCH4V	TGCA	9 cut(s)	231, 284, 336, 623, 670, 758, 786, 864, 1094
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 356, 405
HpyF3I	CTNAG	3 cut(s)	255, 437, 654
HpySE526I	ACGT	1 cut(s)	731
Hsp92II	CATG	5 cut(s)	786, 818, 905, 1020, 1059
Kzo9I	GATC	5 cut(s)	318, 426, 954, 1035, 1074
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	3 cut(s)	173, 289, 664
MaeI	CTAG	3 cut(s)	470, 479, 980
MaeII	ACGT	1 cut(s)	731
MaeIII	GTNAC	3 cut(s)	16, 432, 832
MalI	GATC	5 cut(s)	320, 428, 956, 1037, 1076
MboI	GATC	5 cut(s)	318, 426, 954, 1035, 1074
MboII	GAAGA	2 cut(s)	108, 283
MflI	RGATCY	1 cut(s)	1035
MluCI	AATT	6 cut(s)	128, 461, 578, 631, 821, 1026
MlyI	GAGTC	1 cut(s)	820
MmeI	TCCRAC	1 cut(s)	949
MseI	TTAA	2 cut(s)	54, 630
MslI	CAYNNNNRTG	1 cut(s)	1108
MspI	CCGG	2 cut(s)	296, 430
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	347, 356, 405
NdeII	GATC	5 cut(s)	318, 426, 954, 1035, 1074
NlaIII	CATG	5 cut(s)	786, 818, 905, 1020, 1059
NlaIV	GGNNCC	2 cut(s)	606, 923
NmuCI	GTSAC	2 cut(s)	432, 832
NruI	TCGCGA	1 cut(s)	125
NspI	RCATGY	3 cut(s)	786, 818, 1020
PaeI	GCATGC	2 cut(s)	786, 818
PagI	TCATGA	1 cut(s)	901
PciI	ACATGT	1 cut(s)	1016
PfeI	GAWTC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	614
PfoI	TCCNGGA	1 cut(s)	613
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	820
Ppu21I	YACGTR	1 cut(s)	732
PscI	ACATGT	1 cut(s)	1016
Psp6I	CCWGG	1 cut(s)	613
PspFI	CCCAGC	2 cut(s)	566, 659
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	606, 923
PspPI	GGNCC	3 cut(s)	358, 605, 922
PsuI	RGATCY	1 cut(s)	1035
RruI	TCGCGA	1 cut(s)	125
RsaI	GTAC	2 cut(s)	734, 944
RsaNI	GTAC	2 cut(s)	733, 943
RseI	CAYNNNNRTG	1 cut(s)	1108
SaqAI	TTAA	2 cut(s)	54, 630
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	5 cut(s)	318, 426, 954, 1035, 1074
Sau96I	GGNCC	3 cut(s)	358, 605, 922
SchI	GAGTC	1 cut(s)	820
ScrFI	CCNGG	1 cut(s)	615
SfaNI	GCATC	3 cut(s)	173, 289, 664
SinI	GGWCC	2 cut(s)	605, 922
SmiMI	CAYNNNNRTG	1 cut(s)	1108
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SnaBI	TACGTA	1 cut(s)	732
SphI	GCATGC	2 cut(s)	786, 818
Sse9I	AATT	6 cut(s)	128, 461, 578, 631, 821, 1026
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	3 cut(s)	470, 479, 980
StyD4I	CCNGG	1 cut(s)	613
TaaI	ACNGT	2 cut(s)	739, 876
TaiI	ACGT	1 cut(s)	734
TasI	AATT	6 cut(s)	128, 461, 578, 631, 821, 1026
TatI	WGTACW	1 cut(s)	942
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	54, 630
Tru9I	TTAA	2 cut(s)	54, 630
TscAI	CASTG	4 cut(s)	372, 401, 742, 837
TseFI	GTSAC	2 cut(s)	432, 832
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	2 cut(s)	432, 832
TspDTI	ATGAA	5 cut(s)	192, 407, 704, 890, 923
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	4 cut(s)	372, 401, 742, 837
Van91I	CCANNNNNTGG	1 cut(s)	614
VpaK11BI	GGWCC	2 cut(s)	605, 922
XapI	RAATTY	1 cut(s)	1026
XbaI	TCTAGA	1 cut(s)	469
XceI	RCATGY	3 cut(s)	786, 818, 1020
XspI	CTAG	3 cut(s)	470, 479, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.