Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002589.1

Orthogroup ID

OG0011325

Physical Location & Seq

Genomic Coordinates Reverse (-)

76142 .. 77857

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002589.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

atgtggaggtcagtcgcggcaagatcatcaagagcttccctttcggcaaaggcagcacacaacttcggtgcaacccaaaaccccaaggtactctcctctaaaaccctagtctcacttgcccaatcttctcatttccccgctagatcccctccctgccaaaaccccaggttcttctctcaggtctcagaagaccttagttattctgataccgcagaaccaccgccgccaccgttttcagaaaatgacgacgcccagatggacggttttgcccctggggatggggttgatgggggttcggagcaactgggttctggtgagattggggaggtaggggaagaggaagaagaggttcatgagattgatgtggagaaattggagggtttgttgtctctgcttcatagtagtgctgatgggtctcttgagtctagtttcagggatttggatttgactctacatgaagaatttgtggttagagttcttgaaaccccacttattgtgggggagaatttgattaggttcttcaagtggggtttgaaggagaaacccgaatttagagtcaataagcagatattggatgctcttgtgattgcaatgtgtggtgaagttgttaccaagaaagatatgtattctttgtgggatttggttaagggggttggtgagaaggaggggagtttgttgaatgtggatattctcaatgtgttgatgtcttcgttctcgaagttgggtgaagggaaagctgctttggtggtgttgaacaagtttgatgattttggatgcgtccccaatgcggattcgtattactttgcaattgaggggctttgcaagaattcggaatttgattgtgctaaggctgtgtgtgagaagatgattggtgcaagaagctcgccagatgctgaaaaggttggtaggattgtattgtggttctgcaaggctggaatggcgaaagaggcccattcggtgtatttgttgttgaaggaggagaagcagtgccggcctcgctcgtctgttcattttttgatccgttcacttagtagggaggatgaaaatgtcaaattagctctagacttgctagaggatattgatggtgaagcacggaaatatgcgataaagcccttttctgctgttgttcaagggttatgtaggataaaggatgttgctggggcaagaaaattgcttcttgagatggcaaaaaagggtccacctcctggaaatgcagtttttaattcggttatcaatggctattctaaggctggggatatgcaagatgcgatagagatgatgaagctgatggagagtaggggcttgaaaccagatgtctttacttacactgttattatgagtggttatgcaaaaggtggtcagatggaggaggcatgcaatatcttatctgaagccaaaaagaagcatgctaaattgactccagtgacttatcatacactcatctccagcttttgcaaactggaacagtttgacaaggctttggagttgtttcatgagatgaaagattatggggtccaacccacgactgatgagtacaacaagttgatccaatctctttgcctgaaagcactagattgggaaacgtcagagaaactgctagaagaaatgaaagatagcgggttgtatcttaatggaattacgagaggtctcataagagcagtcaaggaactgcagacggagaaagtagagactgagaaaatagttgcagaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

571

Amino Acids

63.11

Weight (kDa)

5.2

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02650
fragaria_vesca	FvH4_6g27990
malus_domestica	MD00G1017000.v1.1
prunus_persica	Prupe.6G365500_v2.0.a1 Prupe.6G365500_v2.0.a1
pyrus_communis	pycom04g22030 pycom12g24250
rosa_chinensis	RchiOBHm_Chr2g0131651
rosa_laevigata	RLG00000019202
rosa_multiflora	Rmu_sc0002589.1_g000013 Rmu_sc0006926.1_g000033 Rmu_sc0042933.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112740
rosa_rugosa	Rorug02G0298600 Rorug02G0298700
rosa_samantha	Rh2AG351400 Rh2BG358300 Rh2CG336900 Rh2DG375600
rosa_wichuraiana	Rw2G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1205
AccII	CGCG	1 cut(s)	17
AciI	CCGC	7 cut(s)	17, 138, 210, 221, 224, 788, 1617
AclWI	GGATC	3 cut(s)	138, 1012, 1540
AcsI	RAATTY	5 cut(s)	461, 505, 548, 826, 833
AcuI	CTGAAG	1 cut(s)	1410
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	90, 1535
AfiI	CCNNNNNNNGG	3 cut(s)	278, 787, 1205
AgsI	TTSAA	8 cut(s)	482, 523, 535, 679, 754, 973, 1130, 1306
AjnI	CCWGG	3 cut(s)	164, 271, 1204
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
AluBI	AGCT	6 cut(s)	35, 737, 882, 1058, 1285, 1449
AluI	AGCT	6 cut(s)	35, 737, 882, 1058, 1285, 1449
Alw26I	GTCTC	6 cut(s)	115, 187, 393, 420, 1652, 1682
AlwI	GGATC	3 cut(s)	138, 1012, 1540
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	2 cut(s)	948, 992
ApeKI	GCWGC	2 cut(s)	53, 737
ApoI	RAATTY	5 cut(s)	461, 505, 548, 826, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	540, 572
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	3 cut(s)	949, 1196, 1513
AsuHPI	GGTGA	5 cut(s)	326, 611, 668, 737, 1097
AvaII	GGWCC	2 cut(s)	1196, 1513
BbsI	GAAGAC	2 cut(s)	195, 699
BbvI	GCAGC	2 cut(s)	65, 724
BccI	CCATC	8 cut(s)	250, 272, 281, 404, 1076, 1177, 1282, 1357
BcgI	CGANNNNNNTGC	2 cut(s)	864, 898
BciT130I	CCWGG	3 cut(s)	166, 273, 1206
BcoDI	GTCTC	6 cut(s)	115, 187, 393, 420, 1652, 1682
BfaI	CTAG	7 cut(s)	107, 141, 426, 1061, 1070, 1571, 1598
BfmI	CTRYAG	1 cut(s)	1670
BisI	GCNGC	4 cut(s)	18, 54, 224, 738
BlsI	GCNGC	4 cut(s)	19, 55, 225, 739
Bme1390I	CCNGG	3 cut(s)	166, 273, 1206
Bme18I	GGWCC	2 cut(s)	1196, 1513
BmgT120I	GGNCC	3 cut(s)	949, 1196, 1513
BmiI	GGNNCC	2 cut(s)	1197, 1514
BmrFI	CCNGG	3 cut(s)	166, 273, 1206
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	4 cut(s)	565, 764, 880, 1255
BmuI	ACTGGG	1 cut(s)	314
BpiI	GAAGAC	2 cut(s)	195, 699
BpmI	CTGGAG	2 cut(s)	1404, 1429
Bpu10I	CCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	2 cut(s)	440, 1199
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	3 cut(s)	187, 420, 1652
BsaJI	CCNNGG	4 cut(s)	84, 164, 271, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	368, 398, 971, 1001
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 787, 1205
Bse118I	RCCGGY	1 cut(s)	990
Bse1I	ACTGG	3 cut(s)	309, 1421, 1464
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	3 cut(s)	166, 273, 1206
BseDI	CCNNGG	4 cut(s)	84, 164, 271, 272
BseGI	GGATG	5 cut(s)	283, 580, 779, 1045, 1156
BseLI	CCNNNNNNNGG	3 cut(s)	278, 787, 1205
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	3 cut(s)	191, 198, 1683
BseNI	ACTGG	3 cut(s)	309, 1421, 1464
BseRI	GAGGAG	3 cut(s)	85, 992, 1382
BseXI	GCAGC	2 cut(s)	65, 724
BseYI	CCCAGC	2 cut(s)	1157, 1250
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	950, 994
BsiSI	CCGG	1 cut(s)	991
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	3 cut(s)	278, 787, 1205
BsmAI	GTCTC	6 cut(s)	115, 187, 393, 420, 1652, 1682
BsmFI	GGGAC	1 cut(s)	764
BsnI	GGCC	2 cut(s)	950, 994
Bso31I	GGTCTC	3 cut(s)	187, 420, 1652
Bsp143I	GATC	4 cut(s)	23, 143, 1017, 1545
BspACI	CCGC	7 cut(s)	17, 138, 210, 221, 224, 788, 1617
BspANI	GGCC	2 cut(s)	950, 994
BspCNI	CTCAG	3 cut(s)	190, 197, 1684
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	2 cut(s)	352, 1492
BspLI	GGNNCC	2 cut(s)	1197, 1514
BspMAI	CTGCAG	1 cut(s)	1674
BspPI	GGATC	3 cut(s)	138, 1012, 1540
BspTNI	GGTCTC	3 cut(s)	187, 420, 1652
BsrDI	GCAATG	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	990
BsrI	ACTGG	3 cut(s)	309, 1421, 1464
BssAI	RCCGGY	1 cut(s)	990
BssECI	CCNNGG	4 cut(s)	84, 164, 271, 272
BssMI	GATC	4 cut(s)	23, 143, 1017, 1545
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	3 cut(s)	166, 273, 1206
Bst4CI	ACNGT	4 cut(s)	231, 263, 1330, 1467
Bst6I	CTCTTC	2 cut(s)	330, 339
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	4 cut(s)	884, 992, 1375, 1407
BstDEI	CTNAG	7 cut(s)	177, 184, 194, 846, 1028, 1245, 1692
BstF5I	GGATG	5 cut(s)	283, 580, 779, 1045, 1156
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	4 cut(s)	26, 146, 1020, 1548
BstMAI	GTCTC	6 cut(s)	115, 187, 393, 420, 1652, 1682
BstMBI	GATC	4 cut(s)	23, 143, 1017, 1545
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 938, 947, 991, 996
BstNI	CCWGG	3 cut(s)	166, 273, 1206
BstNSI	RCATGY	2 cut(s)	1377, 1409
BstSCI	CCNGG	3 cut(s)	164, 271, 1204
BstSFI	CTRYAG	1 cut(s)	1670
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	65, 724
BstV2I	GAAGAC	2 cut(s)	195, 699
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	950, 994
BtsCI	GGATG	5 cut(s)	283, 580, 779, 1045, 1156
BtsI	GCAGTG	1 cut(s)	992
BtsIMutI	CAGTG	3 cut(s)	992, 1326, 1428
Cac8I	GCNNGC	4 cut(s)	884, 992, 1375, 1407
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	2 cut(s)	352, 1492
Cfr10I	RCCGGY	1 cut(s)	990
Cfr13I	GGNCC	3 cut(s)	949, 1196, 1513
CseI	GACGC	2 cut(s)	257, 766
Csp6I	GTAC	2 cut(s)	89, 1534
CviAII	CATG	5 cut(s)	353, 455, 1374, 1406, 1493
CviQI	GTAC	2 cut(s)	89, 1534
DdeI	CTNAG	7 cut(s)	177, 184, 194, 846, 1028, 1245, 1692
DpnI	GATC	4 cut(s)	25, 145, 1019, 1547
DpnII	GATC	4 cut(s)	23, 143, 1017, 1545
Eam1104I	CTCTTC	2 cut(s)	330, 339
EarI	CTCTTC	2 cut(s)	330, 339
Eco130I	CCWWGG	1 cut(s)	84
Eco31I	GGTCTC	3 cut(s)	187, 420, 1652
Eco47I	GGWCC	2 cut(s)	1196, 1513
Eco57I	CTGAAG	1 cut(s)	1410
EcoRI	GAATTC	1 cut(s)	826
EcoRII	CCWGG	3 cut(s)	164, 271, 1204
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	5 cut(s)	356, 458, 1377, 1409, 1496
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	5 cut(s)	352, 454, 1373, 1405, 1492
FauI	CCCGC	2 cut(s)	145, 1610
Fnu4HI	GCNGC	4 cut(s)	18, 54, 224, 738
FokI	GGATG	5 cut(s)	290, 587, 786, 1052, 1163
Fsp4HI	GCNGC	4 cut(s)	18, 54, 224, 738
FspBI	CTAG	7 cut(s)	107, 141, 426, 1061, 1070, 1571, 1598
GluI	GCNGC	4 cut(s)	18, 54, 224, 738
GsaI	CCCAGC	2 cut(s)	1161, 1254
GsuI	CTGGAG	2 cut(s)	1404, 1429
HaeIII	GGCC	2 cut(s)	950, 994
HapII	CCGG	1 cut(s)	991
HgaI	GACGC	2 cut(s)	257, 766
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	5 cut(s)	356, 458, 1377, 1409, 1496
HinfI	GANTC	5 cut(s)	422, 448, 555, 791, 1417
HpaII	CCGG	1 cut(s)	991
HphI	GGTGA	5 cut(s)	326, 611, 668, 737, 1097
Hpy166II	GTNNAC	2 cut(s)	1025, 1199
Hpy188I	TCNGA	8 cut(s)	187, 205, 238, 298, 832, 1362, 1390, 1588
Hpy188III	TCNNGA	8 cut(s)	30, 353, 419, 479, 715, 1061, 1178, 1493
Hpy8I	GTNNAC	2 cut(s)	1025, 1199
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	4 cut(s)	529, 655, 722, 967
HpyCH4III	ACNGT	4 cut(s)	231, 263, 1330, 1467
HpyCH4IV	ACGT	1 cut(s)	1583
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 938, 947, 991, 996
HpyF3I	CTNAG	7 cut(s)	177, 184, 194, 846, 1028, 1245, 1692
HpySE526I	ACGT	1 cut(s)	1583
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	5 cut(s)	356, 458, 1377, 1409, 1496
KroI	GCCGGC	1 cut(s)	990
KroNI	GCCGGC	1 cut(s)	992
Kzo9I	GATC	4 cut(s)	23, 143, 1017, 1545
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	2 cut(s)	65, 724
LweI	GCATC	4 cut(s)	565, 764, 880, 1255
MaeI	CTAG	7 cut(s)	107, 141, 426, 1061, 1070, 1571, 1598
MaeII	ACGT	1 cut(s)	1583
MaeIII	GTNAC	2 cut(s)	607, 1423
MalI	GATC	4 cut(s)	25, 145, 1019, 1547
MboI	GATC	4 cut(s)	23, 143, 1017, 1545
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	1 cut(s)	143
MlyI	GAGTC	4 cut(s)	431, 442, 564, 1411
MmeI	TCCRAC	1 cut(s)	1540
MroNI	GCCGGC	1 cut(s)	990
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	3 cut(s)	645, 1221, 1629
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	1 cut(s)	991
MspR9I	CCNGG	3 cut(s)	166, 273, 1206
MunI	CAATTG	1 cut(s)	807
MvaI	CCWGG	3 cut(s)	166, 273, 1206
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	5 cut(s)	53, 938, 947, 991, 996
NaeI	GCCGGC	1 cut(s)	992
NdeII	GATC	4 cut(s)	23, 143, 1017, 1545
NgoMIV	GCCGGC	1 cut(s)	990
NlaIII	CATG	5 cut(s)	356, 458, 1377, 1409, 1496
NlaIV	GGNNCC	2 cut(s)	1197, 1514
NmuCI	GTSAC	1 cut(s)	1423
NspI	RCATGY	2 cut(s)	1377, 1409
PaeI	GCATGC	2 cut(s)	1377, 1409
PagI	TCATGA	2 cut(s)	352, 1492
PasI	CCCWGGG	1 cut(s)	272
PdiI	GCCGGC	1 cut(s)	992
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	791
PflMI	CCANNNNNTGG	1 cut(s)	1205
PfoI	TCCNGGA	1 cut(s)	1204
PkrI	GCNGC	4 cut(s)	19, 55, 225, 739
PleI	GAGTC	4 cut(s)	430, 442, 563, 1411
PpsI	GAGTC	4 cut(s)	430, 442, 563, 1411
Psp6I	CCWGG	3 cut(s)	164, 271, 1204
PspFI	CCCAGC	2 cut(s)	1157, 1250
PspGI	CCWGG	3 cut(s)	164, 271, 1204
PspN4I	GGNNCC	2 cut(s)	1197, 1514
PspPI	GGNCC	3 cut(s)	949, 1196, 1513
PstI	CTGCAG	1 cut(s)	1674
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	2 cut(s)	90, 1535
RsaNI	GTAC	2 cut(s)	89, 1534
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	645, 1221, 1629
SatI	GCNGC	4 cut(s)	18, 54, 224, 738
Sau3AI	GATC	4 cut(s)	23, 143, 1017, 1545
Sau96I	GGNCC	3 cut(s)	949, 1196, 1513
SchI	GAGTC	4 cut(s)	431, 442, 564, 1411
ScrFI	CCNGG	3 cut(s)	166, 273, 1206
SfaNI	GCATC	4 cut(s)	565, 764, 880, 1255
SfcI	CTRYAG	1 cut(s)	1670
SinI	GGWCC	2 cut(s)	1196, 1513
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	419, 1178
SmoI	CTYRAG	2 cut(s)	419, 1178
SphI	GCATGC	2 cut(s)	1377, 1409
SsiI	CCGC	7 cut(s)	17, 138, 210, 221, 224, 788, 1617
SspMI	CTAG	7 cut(s)	107, 141, 426, 1061, 1070, 1571, 1598
StyD4I	CCNGG	3 cut(s)	164, 271, 1204
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	4 cut(s)	231, 263, 1330, 1467
TaiI	ACGT	1 cut(s)	1586
TaqI	TCGA	1 cut(s)	716
TatI	WGTACW	1 cut(s)	1533
TauI	GCSGC	2 cut(s)	20, 226
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	3 cut(s)	645, 1221, 1629
Tru9I	TTAA	3 cut(s)	645, 1221, 1629
TscAI	CASTG	3 cut(s)	992, 1333, 1428
TseFI	GTSAC	1 cut(s)	1423
TseI	GCWGC	2 cut(s)	53, 737
Tsp45I	GTSAC	1 cut(s)	1423
TspDTI	ATGAA	9 cut(s)	341, 386, 471, 998, 1056, 1295, 1481, 1514, 1622
TspGWI	ACGGA	3 cut(s)	1010, 1108, 1691
TspRI	CASTG	3 cut(s)	992, 1333, 1428
Van91I	CCANNNNNTGG	1 cut(s)	1205
VpaK11BI	GGWCC	2 cut(s)	1196, 1513
XapI	RAATTY	5 cut(s)	461, 505, 548, 826, 833
XbaI	TCTAGA	1 cut(s)	1060
XceI	RCATGY	2 cut(s)	1377, 1409
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	7 cut(s)	107, 141, 426, 1061, 1070, 1571, 1598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.