Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042933.1

Orthogroup ID

OG0011325

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1083

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042933.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1082 bp

atgtggaggtcagtcgcggcaagatcatcaagagcttctctttcggcaaaggcagcacacaacttcggtgcaacccaaaaccccaaggtactctcctctaaaaccctagtcccacttgcccaatcttctcatttccccgctagatcccctccctgccaaaaccccaggttcttctctcaggtctcagaagaccttagttattctgataccgcagaaccaccgccgccaccgttttcagaaaatgacgacgcccagatggacggttttgcccctggggatggggttgatgggggttcggagcaactgggttctggtgagattggggaggtaggggaagaggaagaagaggttcatgagattgatgtggagaaattggagggtttgttgtctctgcttcatagtagtgctgatgggtctcttgagtctagtttcagggatttggatttgactctacatgaagaatttgtggttagagttcttgaaaccccacttattgtgggggagaatttgattaggttcttcaagtggggtttgaaggagaaacccgaatttagagtcaataagcagatattggatgctcttgtgattgcaatgtgtggtgaagttgtgaccaagaaagatatgtattctttgtgggatttggttaagggggttggtgagaaggaggggagtttgttgaatgtggatattctcaatgtgttgatgtcttcgttctcgaagttgggtgaagggaaagctgctttggtggtgttgaacaagtttgatgattttggatgcgtccccaatgcggatgcgtattactttgcaattgaggggctttgcaagaattcggaatttgattgtgctaaggctgtgtgtgagaagatgattggtgcaagaagctcgccagatgctgaaaaggttggtaggattgtattgtggttctgcaaggctggaatggcgaaagaggcccattcggtgtatttgttgttgaaggaggagaagcagtgccggcctcgctcttctgttcattttttgatccgttcacttagtagggaggatgaaaatgtcaaattagctctagacttgctagaggatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

360

Amino Acids

39.59

Weight (kDa)

4.88

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02650
fragaria_vesca	FvH4_6g27990
malus_domestica	MD00G1017000.v1.1
prunus_persica	Prupe.6G365500_v2.0.a1 Prupe.6G365500_v2.0.a1
pyrus_communis	pycom04g22030 pycom12g24250
rosa_chinensis	RchiOBHm_Chr2g0131651
rosa_laevigata	RLG00000019202
rosa_multiflora	Rmu_sc0002589.1_g000013 Rmu_sc0006926.1_g000033 Rmu_sc0042933.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112740
rosa_rugosa	Rorug02G0298600 Rorug02G0298700
rosa_samantha	Rh2AG351400 Rh2BG358300 Rh2CG336900 Rh2DG375600
rosa_wichuraiana	Rw2G028540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	6 cut(s)	17, 138, 210, 221, 224, 788
AclWI	GGATC	2 cut(s)	138, 1012
AcsI	RAATTY	5 cut(s)	461, 505, 548, 826, 833
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	278, 787
AgsI	TTSAA	6 cut(s)	482, 523, 535, 679, 754, 973
AjnI	CCWGG	2 cut(s)	164, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
AluBI	AGCT	4 cut(s)	35, 737, 882, 1058
AluI	AGCT	4 cut(s)	35, 737, 882, 1058
Alw26I	GTCTC	3 cut(s)	187, 393, 420
AlwI	GGATC	2 cut(s)	138, 1012
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	2 cut(s)	948, 992
ApeKI	GCWGC	2 cut(s)	53, 737
ApoI	RAATTY	5 cut(s)	461, 505, 548, 826, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	540, 572
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	949
AsuHPI	GGTGA	4 cut(s)	326, 611, 668, 737
BbsI	GAAGAC	2 cut(s)	195, 699
BbvI	GCAGC	2 cut(s)	65, 724
BccI	CCATC	4 cut(s)	250, 272, 281, 404
BcgI	CGANNNNNNTGC	2 cut(s)	864, 898
BciT130I	CCWGG	2 cut(s)	166, 273
BcoDI	GTCTC	3 cut(s)	187, 393, 420
BfaI	CTAG	5 cut(s)	107, 141, 426, 1061, 1070
BisI	GCNGC	4 cut(s)	18, 54, 224, 738
BlsI	GCNGC	4 cut(s)	19, 55, 225, 739
Bme1390I	CCNGG	2 cut(s)	166, 273
BmgT120I	GGNCC	1 cut(s)	949
BmrFI	CCNGG	2 cut(s)	166, 273
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	4 cut(s)	565, 764, 781, 880
BmuI	ACTGGG	1 cut(s)	314
BpiI	GAAGAC	2 cut(s)	195, 699
Bpu10I	CCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	2 cut(s)	187, 420
BsaJI	CCNNGG	4 cut(s)	84, 164, 271, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	368, 398, 971, 1001
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 787
Bse118I	RCCGGY	1 cut(s)	990
Bse1I	ACTGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	2 cut(s)	166, 273
BseDI	CCNNGG	4 cut(s)	84, 164, 271, 272
BseGI	GGATG	5 cut(s)	283, 580, 779, 796, 1045
BseLI	CCNNNNNNNGG	2 cut(s)	278, 787
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	2 cut(s)	191, 198
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	85, 992
BseXI	GCAGC	2 cut(s)	65, 724
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	950, 994
BsiSI	CCGG	1 cut(s)	991
BslFI	GGGAC	2 cut(s)	95, 764
BslI	CCNNNNNNNGG	2 cut(s)	278, 787
BsmAI	GTCTC	3 cut(s)	187, 393, 420
BsmFI	GGGAC	2 cut(s)	95, 764
BsnI	GGCC	2 cut(s)	950, 994
Bso31I	GGTCTC	2 cut(s)	187, 420
Bsp143I	GATC	3 cut(s)	23, 143, 1017
BspACI	CCGC	6 cut(s)	17, 138, 210, 221, 224, 788
BspANI	GGCC	2 cut(s)	950, 994
BspCNI	CTCAG	2 cut(s)	190, 197
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	352
BspPI	GGATC	2 cut(s)	138, 1012
BspQI	GCTCTTC	1 cut(s)	1006
BspTNI	GGTCTC	2 cut(s)	187, 420
BsrDI	GCAATG	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	990
BsrI	ACTGG	1 cut(s)	309
BssAI	RCCGGY	1 cut(s)	990
BssECI	CCNNGG	4 cut(s)	84, 164, 271, 272
BssMI	GATC	3 cut(s)	23, 143, 1017
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	166, 273
Bst4CI	ACNGT	2 cut(s)	231, 263
Bst6I	CTCTTC	3 cut(s)	330, 339, 1006
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	884, 992
BstDEI	CTNAG	5 cut(s)	177, 184, 194, 846, 1028
BstF5I	GGATG	5 cut(s)	283, 580, 779, 796, 1045
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	26, 146, 1020
BstMAI	GTCTC	3 cut(s)	187, 393, 420
BstMBI	GATC	3 cut(s)	23, 143, 1017
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 938, 947, 991, 996
BstNI	CCWGG	2 cut(s)	166, 273
BstSCI	CCNGG	2 cut(s)	164, 271
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	65, 724
BstV2I	GAAGAC	2 cut(s)	195, 699
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	950, 994
BtsCI	GGATG	5 cut(s)	283, 580, 779, 796, 1045
BtsI	GCAGTG	1 cut(s)	992
BtsIMutI	CAGTG	1 cut(s)	992
Cac8I	GCNNGC	2 cut(s)	884, 992
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	990
Cfr13I	GGNCC	1 cut(s)	949
CseI	GACGC	2 cut(s)	257, 766
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	2 cut(s)	353, 455
CviJI	RGCY	9 cut(s)	35, 737, 817, 851, 882, 932, 950, 994, 1058
CviKI_1	RGCY	9 cut(s)	35, 737, 817, 851, 882, 932, 950, 994, 1058
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	5 cut(s)	177, 184, 194, 846, 1028
DpnI	GATC	3 cut(s)	25, 145, 1019
DpnII	GATC	3 cut(s)	23, 143, 1017
Eam1104I	CTCTTC	3 cut(s)	330, 339, 1006
EarI	CTCTTC	3 cut(s)	330, 339, 1006
Eco130I	CCWWGG	1 cut(s)	84
Eco31I	GGTCTC	2 cut(s)	187, 420
EcoRI	GAATTC	1 cut(s)	826
EcoRII	CCWGG	2 cut(s)	164, 271
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	356, 458
FaiI	YATR	4 cut(s)	354, 399, 456, 623
FaqI	GGGAC	2 cut(s)	95, 764
FatI	CATG	2 cut(s)	352, 454
FauI	CCCGC	1 cut(s)	145
Fnu4HI	GCNGC	4 cut(s)	18, 54, 224, 738
FokI	GGATG	5 cut(s)	290, 587, 786, 803, 1052
Fsp4HI	GCNGC	4 cut(s)	18, 54, 224, 738
FspBI	CTAG	5 cut(s)	107, 141, 426, 1061, 1070
GluI	GCNGC	4 cut(s)	18, 54, 224, 738
HaeIII	GGCC	2 cut(s)	950, 994
HapII	CCGG	1 cut(s)	991
HgaI	GACGC	2 cut(s)	257, 766
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	356, 458
HinfI	GANTC	3 cut(s)	422, 448, 555
HpaII	CCGG	1 cut(s)	991
HphI	GGTGA	4 cut(s)	326, 611, 668, 737
Hpy166II	GTNNAC	1 cut(s)	1025
Hpy188I	TCNGA	5 cut(s)	187, 205, 238, 298, 832
Hpy188III	TCNNGA	6 cut(s)	30, 353, 419, 479, 715, 1061
Hpy8I	GTNNAC	1 cut(s)	1025
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	4 cut(s)	529, 655, 722, 967
HpyCH4III	ACNGT	2 cut(s)	231, 263
HpyCH4V	TGCA	6 cut(s)	71, 590, 806, 822, 875, 927
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 938, 947, 991, 996
HpyF3I	CTNAG	5 cut(s)	177, 184, 194, 846, 1028
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	356, 458
KroI	GCCGGC	1 cut(s)	990
KroNI	GCCGGC	1 cut(s)	992
Kzo9I	GATC	3 cut(s)	23, 143, 1017
LguI	GCTCTTC	1 cut(s)	1006
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	2 cut(s)	65, 724
LweI	GCATC	4 cut(s)	565, 764, 781, 880
MaeI	CTAG	5 cut(s)	107, 141, 426, 1061, 1070
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	3 cut(s)	25, 145, 1019
MboI	GATC	3 cut(s)	23, 143, 1017
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	8 cut(s)	371, 461, 505, 548, 807, 826, 833, 1052
MlyI	GAGTC	3 cut(s)	431, 442, 564
MroNI	GCCGGC	1 cut(s)	990
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	1 cut(s)	991
MspR9I	CCNGG	2 cut(s)	166, 273
MunI	CAATTG	1 cut(s)	807
MvaI	CCWGG	2 cut(s)	166, 273
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	5 cut(s)	53, 938, 947, 991, 996
NaeI	GCCGGC	1 cut(s)	992
NdeII	GATC	3 cut(s)	23, 143, 1017
NgoMIV	GCCGGC	1 cut(s)	990
NlaIII	CATG	2 cut(s)	356, 458
NmuCI	GTSAC	1 cut(s)	607
PagI	TCATGA	1 cut(s)	352
PasI	CCCWGGG	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	1006
PdiI	GCCGGC	1 cut(s)	992
PdmI	GAANNNNTTC	1 cut(s)	348
PkrI	GCNGC	4 cut(s)	19, 55, 225, 739
PleI	GAGTC	3 cut(s)	430, 442, 563
PpsI	GAGTC	3 cut(s)	430, 442, 563
Psp6I	CCWGG	2 cut(s)	164, 271
PspGI	CCWGG	2 cut(s)	164, 271
PspPI	GGNCC	1 cut(s)	949
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	1006
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	4 cut(s)	18, 54, 224, 738
Sau3AI	GATC	3 cut(s)	23, 143, 1017
Sau96I	GGNCC	1 cut(s)	949
SchI	GAGTC	3 cut(s)	431, 442, 564
ScrFI	CCNGG	2 cut(s)	166, 273
SfaNI	GCATC	4 cut(s)	565, 764, 781, 880
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	8 cut(s)	371, 461, 505, 548, 807, 826, 833, 1052
SsiI	CCGC	6 cut(s)	17, 138, 210, 221, 224, 788
SspMI	CTAG	5 cut(s)	107, 141, 426, 1061, 1070
StyD4I	CCNGG	2 cut(s)	164, 271
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	231, 263
TaqI	TCGA	1 cut(s)	716
TasI	AATT	8 cut(s)	371, 461, 505, 548, 807, 826, 833, 1052
TauI	GCSGC	2 cut(s)	20, 226
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	1 cut(s)	992
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	2 cut(s)	53, 737
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	5 cut(s)	341, 386, 471, 998, 1056
TspGWI	ACGGA	1 cut(s)	1010
TspRI	CASTG	1 cut(s)	992
XapI	RAATTY	5 cut(s)	461, 505, 548, 826, 833
XbaI	TCTAGA	1 cut(s)	1060
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	5 cut(s)	107, 141, 426, 1061, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.