Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009481

Physical Location & Seq

Genomic Coordinates Reverse (-)

23330737 .. 23334253

Gene Structure 3517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30200.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGACAGGAATGGTGGGCTCGTTCTTGCAAGTCCAACTCAACAAATCCATGTCGACATGCTCCAACGGCCATTACATTCCATAGGTGCAAGAACTTGAAGGTCAGAAATCTTATGATTGTCAATAGTCAAAAAATGCACATGCAATTCACCAACTGTATGCGGGTAGTTGCGTCTCATCTTCAAGTGATTGCACCTGCCACTAGTCCCAATACTGATGGAATCCACATTAGTGTCTCAAAGGGTGTTCAGGTCAAGGATAGCATAATAAGAACAGGAGATGACTGCATTTCTATAGTTAGCAATTCTTCACGCATCCAGATTGTGAATATCGTTTGCGGCCCTGGTCATGGCATCAGCATTGGAAGCTTGGGTAAATCAAACTCTTGGTCCCAAGTGCGTGATGTAATTATTGATACAGCACTCCTCTCTAACACTGAGAATGGGGTGAGGATCAAAACATGGCAGGGAGGTAGTGGTTTTGCCTCTAACATTGCATTTCGCAATGTGGTCATGGACAACGTATCAAATCCAATTATAATTGATCAATATTATTGTGACTCCCAGTTGCCTTGTTTAAATCAGACTTTGGCAGTCAAAGTTGAGAATATATCCTTTACGCACATTAAAGGGACTTCTGCTACAGAGGAAGCAATAAGATTTGCATGTAGTGATGATTCTCAATGTGAAGGTTTATATTTAGAAGATGTTCAACTTCTACCATCTACTGGTGAAATAGCAAGATCATTTTGTTGGGAAGCTCAAGGCTCAAGTTTGGGTACAGTTGATCCACCTGCATGCTTTTCTGATAGTGAAGAATTAGTTAAACAAAAAGTCCTCTTACACCCTGTAAGTTTGGTATATGGAGGAAAGGCGACCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

295

Amino Acids

32.0

Weight (kDa)

7.05

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_28	PF00295	54 - 271	4.6e-75	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80170 AT1G80170
fragaria_vesca	FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200
malus_domestica	MD17G1207200.v1.1
prunus_persica	Prupe.3G081700_v2.0.a1
pyrus_communis	pycom17g20990
rosa_chinensis	RchiOBHm_Chr2g0136441
rosa_laevigata	RLG00000019531
rosa_multiflora	Rmu_sc0001998.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108290 Rroxscaffold_5G00349940
rosa_rugosa	Rorug02G0330200
rosa_samantha	Rh2AG381400 Rh2BG388100 Rh2CG367700 Rh2DG404500
rosa_wichuraiana	Rw2G031180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AarI	CACCTGC	2 cut(s)	205, 802
Acc36I	ACCTGC	2 cut(s)	205, 802
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	2 cut(s)	163, 339
AclWI	GGATC	2 cut(s)	461, 782
AcoI	YGGCCR	1 cut(s)	69
AfaI	GTAC	1 cut(s)	781
AfiI	CCNNNNNNNGG	2 cut(s)	350, 728
AgsI	TTSAA	3 cut(s)	100, 185, 713
AhlI	ACTAGT	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	343
AleI	CACNNNNGTG	1 cut(s)	231
AluBI	AGCT	2 cut(s)	369, 761
AluI	AGCT	2 cut(s)	369, 761
Alw26I	GTCTC	2 cut(s)	180, 241
AlwI	GGATC	2 cut(s)	461, 782
AoxI	GGCC	2 cut(s)	69, 340
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
Asp700I	GAANNNNTTC	1 cut(s)	708
AspS9I	GGNCC	2 cut(s)	341, 390
AsuHPI	GGTGA	3 cut(s)	142, 460, 743
AvaII	GGWCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	22
BccI	CCATC	2 cut(s)	212, 730
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	2 cut(s)	180, 241
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	3 cut(s)	294, 642, 881
BfuAI	ACCTGC	2 cut(s)	205, 802
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	2 cut(s)	341, 390
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	559
BmsI	GCATC	2 cut(s)	324, 363
BmuI	ACTGGG	1 cut(s)	559
BpuEI	CTTGAG	2 cut(s)	747, 754
BsaJI	CCNNGG	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 728
Bse1I	ACTGG	2 cut(s)	565, 733
Bse3DI	GCAATG	2 cut(s)	492, 511
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	350, 728
BseMI	GCAATG	2 cut(s)	492, 511
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	565, 733
BseRI	GAGGAG	1 cut(s)	416
BshFI	GGCC	2 cut(s)	71, 342
BslFI	GGGAC	4 cut(s)	18, 192, 376, 646
BslI	CCNNNNNNNGG	2 cut(s)	350, 728
BsmAI	GTCTC	2 cut(s)	180, 241
BsmBI	CGTCTC	1 cut(s)	180
BsmFI	GGGAC	4 cut(s)	18, 192, 376, 646
BsnI	GGCC	2 cut(s)	71, 342
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	453, 544, 743, 787
BspACI	CCGC	2 cut(s)	163, 339
BspANI	GGCC	2 cut(s)	71, 342
BspCNI	CTCAG	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	392
BspMI	ACCTGC	2 cut(s)	205, 802
BspPI	GGATC	2 cut(s)	461, 782
BsrDI	GCAATG	2 cut(s)	492, 511
BsrI	ACTGG	2 cut(s)	565, 733
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	4 cut(s)	453, 544, 743, 787
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	158, 784
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	315
BstKTI	GATC	4 cut(s)	456, 547, 746, 790
BstMAI	GTCTC	2 cut(s)	180, 241
BstMBI	GATC	4 cut(s)	453, 544, 743, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 366
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	4 cut(s)	62, 145, 669, 801
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	3 cut(s)	294, 642, 881
BsuRI	GGCC	2 cut(s)	71, 342
BtsCI	GGATG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	435
BveI	ACCTGC	2 cut(s)	205, 802
Cac8I	GCNNGC	1 cut(s)	799
Cfr13I	GGNCC	2 cut(s)	341, 390
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	780
CviAII	CATG	8 cut(s)	51, 59, 142, 350, 462, 514, 666, 798
CviJI	RGCY	6 cut(s)	20, 71, 342, 369, 761, 768
CviKI_1	RGCY	6 cut(s)	20, 71, 342, 369, 761, 768
CviQI	GTAC	1 cut(s)	780
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	4 cut(s)	455, 546, 745, 789
DpnII	GATC	4 cut(s)	453, 544, 743, 787
DraI	TTTAAA	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	8 cut(s)	54, 62, 145, 353, 465, 517, 669, 801
FaqI	GGGAC	4 cut(s)	18, 192, 376, 646
FatI	CATG	8 cut(s)	50, 58, 141, 349, 461, 513, 665, 797
FauI	CCCGC	1 cut(s)	156
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	71, 342
HgaI	GACGC	1 cut(s)	162
Hin1II	CATG	8 cut(s)	54, 62, 145, 353, 465, 517, 669, 801
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	3 cut(s)	222, 560, 677
HphI	GGTGA	3 cut(s)	142, 460, 743
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	3 cut(s)	107, 585, 808
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	94, 683
HpyCH4III	ACNGT	2 cut(s)	158, 784
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	9 cut(s)	30, 90, 139, 145, 194, 288, 497, 665, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 366
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	8 cut(s)	54, 62, 145, 353, 465, 517, 669, 801
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	4 cut(s)	453, 544, 743, 787
LmnI	GCTCC	1 cut(s)	67
LweI	GCATC	2 cut(s)	324, 363
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	4 cut(s)	455, 546, 745, 789
MboI	GATC	4 cut(s)	453, 544, 743, 787
MboII	GAAGA	4 cut(s)	173, 300, 716, 827
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	6 cut(s)	146, 304, 408, 534, 540, 818
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	2 cut(s)	60, 89
MnlI	CCTC	7 cut(s)	437, 444, 464, 496, 640, 848, 860
MroXI	GAANNNNTTC	1 cut(s)	708
MseI	TTAA	3 cut(s)	578, 627, 825
MslI	CAYNNNNRTG	2 cut(s)	231, 796
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	68, 366
NdeII	GATC	4 cut(s)	453, 544, 743, 787
NlaIII	CATG	8 cut(s)	54, 62, 145, 353, 465, 517, 669, 801
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	557
NspI	RCATGY	4 cut(s)	62, 145, 669, 801
OliI	CACNNNNGTG	1 cut(s)	231
PaeI	GCATGC	1 cut(s)	801
PaqCI	CACCTGC	2 cut(s)	205, 802
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	222, 677
PflMI	CCANNNNNTGG	1 cut(s)	728
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
PsiI	TTATAA	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	392
PspPI	GGNCC	2 cut(s)	341, 390
RsaI	GTAC	1 cut(s)	781
RsaNI	GTAC	1 cut(s)	780
RseI	CAYNNNNRTG	2 cut(s)	231, 796
SalI	GTCGAC	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	578, 627, 825
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	4 cut(s)	453, 544, 743, 787
Sau96I	GGNCC	2 cut(s)	341, 390
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	22
SfaNI	GCATC	2 cut(s)	324, 363
SfcI	CTRYAG	3 cut(s)	294, 642, 881
SinI	GGWCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	2 cut(s)	231, 796
SmlI	CTYRAG	2 cut(s)	762, 769
SmoI	CTYRAG	2 cut(s)	762, 769
SpeI	ACTAGT	1 cut(s)	203
SphI	GCATGC	1 cut(s)	801
Sse9I	AATT	6 cut(s)	146, 304, 408, 534, 540, 818
SsiI	CCGC	2 cut(s)	163, 339
SspI	AATATT	1 cut(s)	551
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	158, 784
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	1 cut(s)	55
TasI	AATT	6 cut(s)	146, 304, 408, 534, 540, 818
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	222, 677
Tru1I	TTAA	3 cut(s)	578, 627, 825
Tru9I	TTAA	3 cut(s)	578, 627, 825
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	557
Tsp45I	GTSAC	1 cut(s)	557
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	390
XceI	RCATGY	4 cut(s)	62, 145, 669, 801
XmiI	GTMKAC	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.