Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009481

Physical Location & Seq

Genomic Coordinates Forward (+)

6063881 .. 6067444

Gene Structure 3564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G081700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGAGAAGCATTAGATCTTGCCCAACTGCTTCAAAATGTTTAATTGTTCTTATTCACATGCTCTTTCTGCTGGTTAGCTCAAATACTGCAAATGGAGAAAATTTTGACTCTTTCTTACAGCTCCCACAATCCGGGTCGACCAGAACCCGACCCAAATCCAAGAGGGTTCTTTTTGTTGGTGATTTTGGTGCAAAAGGAGATGGCATCACTGATGACTCTAAGGCTTTCAAAAATGCTTGGGAGATAGCTTGTTCATTGCCCATGCGTATGAGAATTGTAATTCCTGTTGGAAGCACTTACCTTGTCCACCCTCTCGATATTGCTGGACCGTGTAGATCAAAGGTTACTTTAATGATCTCTGGTAACATTGTTGCTCCCAAAGATCCGGATGCTTGGATTGGTTTGAATCCACGTAAGTGGCTTTATTTCCATGGAGTGAACCACCTTACCCTAGAAGGGGGAGGGAGAATCAATGGGATGGGACAGGAGTGGTGGGCTCGGTCTTGCAAGACCAACTCAACAAATCCATGTCGACATGCTCCAACGGCAGTTACATTCCATAGGTGTAAGAATTTGAAGGTCAAGGATCTTATGATTGTCAATAGTCAACAAATGCACATGGCATTCACTAACTGTATGCGGGTAGTGGCATCCAATCTCAGGGTGATGGCCCCTGCTGTTAGTCCCAATACTGATGGAATCCACATTAGTGCATCAAGGGGCGTTGAAGTCAAAAACAGCATAATAAGAACAGGAGATGACTGCATTTCAATAGTCAGCAACTCTTCACGAATCCGGATTATAAATATTGCTTGTGGCCCTGGTCATGGCATAAGCATTGGAAGCTTGGGAAAGTCAAACTCTTGGTCACACGTGCATGATGTATTGGTTGATGTAGCATTATTGTCTAACACGGACAATGGAGTGAGGATCAAAACATGGCAGGGAGGTAGTGGTTTTGCCTCTAACATTGCATTCCGGAATGTGTTGATGGACAATGTGTCAAATCCGATAATAATAGATCAATATTATTGCGACTCTTGGCTGCCATGTCTAAATCAGAGTTCAGCAGTAAAGGTGGAGAATATATCCTTCGTGCACGTTAAAGGGACTTCTGCTACAGAAGAAGCAATAAGTTTTGCTTGCAGTGATGACTCTCCATGTGAAGGATTATATTTAGAAGATATTCAACTTCAATCATCCATTGGGGGAATTACAAGATCTCTTTGCTGGGAAGCTCAGGGCTCAAGTTCAGGTTCAGTCGACCCACCTGCTTGCTTTTCGAGTTTTTTGAGTAGTGAAAACTTCATGAAGCAGAAAGTCAATCCACAGACCATTCATTCACAGAGGTTAGCCAATCTGGACCATGGAGGAAGGGCAACCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

463

Amino Acids

50.24

Weight (kDa)

8.83

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80170 AT1G80170
fragaria_vesca	FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200
malus_domestica	MD17G1207200.v1.1
prunus_persica	Prupe.3G081700_v2.0.a1
pyrus_communis	pycom17g20990
rosa_chinensis	RchiOBHm_Chr2g0136441
rosa_laevigata	RLG00000019531
rosa_multiflora	Rmu_sc0001998.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108290 Rroxscaffold_5G00349940
rosa_rugosa	Rorug02G0330200
rosa_samantha	Rh2AG381400 Rh2BG388100 Rh2CG367700 Rh2DG404500
rosa_wichuraiana	Rw2G031180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	803
AarI	CACCTGC	1 cut(s)	1279
Acc36I	ACCTGC	1 cut(s)	1279
AccI	GTMKAC	3 cut(s)	137, 532, 1263
AccIII	TCCGGA	3 cut(s)	385, 795, 978
AciI	CCGC	1 cut(s)	640
AclWI	GGATC	3 cut(s)	377, 594, 938
AcsI	RAATTY	2 cut(s)	100, 571
AcvI	CACGTG	1 cut(s)	874
AfiI	CCNNNNNNNGG	6 cut(s)	131, 456, 457, 660, 827, 1166
AflIII	ACRYGT	1 cut(s)	871
AgsI	TTSAA	8 cut(s)	33, 229, 406, 577, 728, 771, 1190, 1196
AhdI	GACNNNNNGTC	1 cut(s)	1000
AjnI	CCWGG	1 cut(s)	820
AleI	CACNNNNGTG	2 cut(s)	415, 708
AluBI	AGCT	5 cut(s)	78, 121, 248, 846, 1238
AluI	AGCT	5 cut(s)	78, 121, 248, 846, 1238
Alw21I	GWGCWC	1 cut(s)	1101
Alw44I	GTGCAC	1 cut(s)	1097
AlwI	GGATC	3 cut(s)	377, 594, 938
Aor13HI	TCCGGA	3 cut(s)	385, 795, 978
AoxI	GGCC	2 cut(s)	669, 817
ApaLI	GTGCAC	1 cut(s)	1097
ApeKI	GCWGC	1 cut(s)	1045
ApoI	RAATTY	2 cut(s)	100, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	851, 883
Asp700I	GAANNNNTTC	1 cut(s)	1185
AspS9I	GGNCC	4 cut(s)	326, 670, 818, 1363
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	191, 676
AvaII	GGWCC	2 cut(s)	326, 1363
BaeGI	GKGCMC	1 cut(s)	1101
BanII	GRGCYC	2 cut(s)	499, 1247
BbrPI	CACGTG	1 cut(s)	874
Bbv12I	GWGCWC	1 cut(s)	1101
BbvI	GCAGC	1 cut(s)	1032
BccI	CCATC	5 cut(s)	194, 472, 661, 689, 985
BceAI	ACGGC	1 cut(s)	561
BcgI	CGANNNNNNTGC	2 cut(s)	1253, 1287
BciT130I	CCWGG	1 cut(s)	822
BcnI	CCSGG	1 cut(s)	133
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	1119
BfuAI	ACCTGC	1 cut(s)	1279
BglII	AGATCT	2 cut(s)	14, 1220
BisI	GCNGC	1 cut(s)	1046
BlsI	GCNGC	1 cut(s)	1047
Bme1390I	CCNGG	2 cut(s)	133, 822
Bme18I	GGWCC	2 cut(s)	326, 1363
BmeRI	GACNNNNNGTC	1 cut(s)	1000
BmgT120I	GGNCC	4 cut(s)	326, 670, 818, 1363
BmiI	GGNNCC	1 cut(s)	672
BmrFI	CCNGG	2 cut(s)	133, 822
BmsI	GCATC	4 cut(s)	213, 379, 659, 722
Bpu10I	CCTNAGC	1 cut(s)	1239
BpuEI	CTTGAG	1 cut(s)	1231
BpuMI	CCSGG	1 cut(s)	133
BsaAI	YACGTR	2 cut(s)	413, 874
BsaJI	CCNNGG	3 cut(s)	430, 820, 1366
BsaWI	WCCGGW	3 cut(s)	385, 795, 978
Bsc4I	CCNNNNNNNGG	6 cut(s)	131, 456, 457, 660, 827, 1166
Bse3DI	GCAATG	2 cut(s)	254, 969
BseAI	TCCGGA	3 cut(s)	385, 795, 978
BseBI	CCWGG	1 cut(s)	822
BseDI	CCNNGG	3 cut(s)	430, 820, 1366
BseGI	GGATG	4 cut(s)	394, 483, 650, 1199
BseLI	CCNNNNNNNGG	6 cut(s)	131, 456, 457, 660, 827, 1166
BseMI	GCAATG	2 cut(s)	254, 969
BseMII	CTCAG	2 cut(s)	673, 1253
BseSI	GKGCMC	1 cut(s)	1101
BseXI	GCAGC	1 cut(s)	1032
BseYI	CCCAGC	1 cut(s)	1230
BshFI	GGCC	2 cut(s)	671, 819
BsiHKAI	GWGCWC	1 cut(s)	1101
BsiSI	CCGG	4 cut(s)	132, 386, 796, 979
BslFI	GGGAC	3 cut(s)	495, 669, 1123
BslI	CCNNNNNNNGG	6 cut(s)	131, 456, 457, 660, 827, 1166
BsmFI	GGGAC	3 cut(s)	495, 669, 1123
BsmI	GAATGC	2 cut(s)	623, 974
BsnI	GGCC	2 cut(s)	671, 819
Bsp1286I	GDGCHC	3 cut(s)	499, 1101, 1247
Bsp13I	TCCGGA	3 cut(s)	385, 795, 978
Bsp143I	GATC	8 cut(s)	14, 335, 354, 382, 586, 930, 1021, 1220
Bsp19I	CCATGG	2 cut(s)	430, 1366
BspACI	CCGC	1 cut(s)	640
BspANI	GGCC	2 cut(s)	671, 819
BspCNI	CTCAG	2 cut(s)	672, 1252
BspEI	TCCGGA	3 cut(s)	385, 795, 978
BspHI	TCATGA	1 cut(s)	1308
BspLI	GGNNCC	1 cut(s)	672
BspMI	ACCTGC	1 cut(s)	1279
BspPI	GGATC	3 cut(s)	377, 594, 938
BsrDI	GCAATG	2 cut(s)	254, 969
BssECI	CCNNGG	3 cut(s)	430, 820, 1366
BssMI	GATC	8 cut(s)	14, 335, 354, 382, 586, 930, 1021, 1220
BssT1I	CCWWGG	2 cut(s)	430, 1366
Bst2UI	CCWGG	1 cut(s)	822
Bst4CI	ACNGT	2 cut(s)	330, 635
Bst6I	CTCTTC	1 cut(s)	790
BstBAI	YACGTR	2 cut(s)	413, 874
BstC8I	GCNNGC	2 cut(s)	1144, 1276
BstDEI	CTNAG	3 cut(s)	219, 659, 1239
BstDSI	CCRYGG	2 cut(s)	430, 1366
BstF5I	GGATG	4 cut(s)	394, 483, 650, 1199
BstKTI	GATC	8 cut(s)	17, 338, 357, 385, 589, 933, 1024, 1223
BstMBI	GATC	8 cut(s)	14, 335, 354, 382, 586, 930, 1021, 1220
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 545, 843
BstNI	CCWGG	1 cut(s)	822
BstNSI	RCATGY	2 cut(s)	61, 539
BstSCI	CCNGG	2 cut(s)	131, 820
BstSFI	CTRYAG	1 cut(s)	1119
BstSLI	GKGCMC	1 cut(s)	1101
BstV1I	GCAGC	1 cut(s)	1032
BstX2I	RGATCY	4 cut(s)	14, 382, 586, 1220
BstXI	CCANNNNNNTGG	1 cut(s)	417
BstYI	RGATCY	4 cut(s)	14, 382, 586, 1220
BsuRI	GGCC	2 cut(s)	671, 819
BtgI	CCRYGG	2 cut(s)	430, 1366
BtsCI	GGATG	4 cut(s)	394, 483, 650, 1199
BtsI	GCAGTG	1 cut(s)	1153
BtsIMutI	CAGTG	2 cut(s)	207, 1153
BveI	ACCTGC	1 cut(s)	1279
Cac8I	GCNNGC	2 cut(s)	1144, 1276
CciI	TCATGA	1 cut(s)	1308
Cfr13I	GGNCC	4 cut(s)	326, 670, 818, 1363
DdeI	CTNAG	3 cut(s)	219, 659, 1239
DpnI	GATC	8 cut(s)	16, 337, 356, 384, 588, 932, 1023, 1222
DpnII	GATC	8 cut(s)	14, 335, 354, 382, 586, 930, 1021, 1220
DriI	GACNNNNNGTC	1 cut(s)	1000
Eam1104I	CTCTTC	1 cut(s)	790
Eam1105I	GACNNNNNGTC	1 cut(s)	1000
EarI	CTCTTC	1 cut(s)	790
Eco130I	CCWWGG	2 cut(s)	430, 1366
Eco24I	GRGCYC	2 cut(s)	499, 1247
Eco47I	GGWCC	2 cut(s)	326, 1363
Eco72I	CACGTG	1 cut(s)	874
EcoRII	CCWGG	1 cut(s)	820
EcoT14I	CCWWGG	2 cut(s)	430, 1366
EcoT38I	GRGCYC	2 cut(s)	499, 1247
ErhI	CCWWGG	2 cut(s)	430, 1366
FalI	AAGNNNNNCTT	2 cut(s)	1126, 1158
FaqI	GGGAC	3 cut(s)	495, 669, 1123
FauI	CCCGC	1 cut(s)	633
FblI	GTMKAC	3 cut(s)	137, 532, 1263
Fnu4HI	GCNGC	1 cut(s)	1046
FokI	GGATG	4 cut(s)	401, 490, 637, 1186
FriOI	GRGCYC	2 cut(s)	499, 1247
Fsp4HI	GCNGC	1 cut(s)	1046
FspBI	CTAG	1 cut(s)	452
GluI	GCNGC	1 cut(s)	1046
GsaI	CCCAGC	1 cut(s)	1234
HaeIII	GGCC	2 cut(s)	671, 819
HapII	CCGG	4 cut(s)	132, 386, 796, 979
HincII	GTYRAC	4 cut(s)	138, 533, 608, 1264
HindII	GTYRAC	4 cut(s)	138, 533, 608, 1264
HindIII	AAGCTT	1 cut(s)	844
HinfI	GANTC	8 cut(s)	107, 215, 406, 468, 699, 792, 1037, 1154
HpaII	CCGG	4 cut(s)	132, 386, 796, 979
HphI	GGTGA	2 cut(s)	191, 676
Hpy166II	GTNNAC	7 cut(s)	138, 307, 439, 533, 608, 1099, 1264
Hpy188I	TCNGA	2 cut(s)	1011, 1062
Hpy188III	TCNNGA	7 cut(s)	314, 386, 789, 796, 979, 1309, 1361
Hpy8I	GTNNAC	7 cut(s)	138, 307, 439, 533, 608, 1099, 1264
HpyAV	CCTTC	5 cut(s)	449, 571, 1102, 1160, 1368
HpyCH4III	ACNGT	2 cut(s)	330, 635
HpyCH4IV	ACGT	3 cut(s)	412, 873, 1101
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 545, 843
HpyF3I	CTNAG	3 cut(s)	219, 659, 1239
HpySE526I	ACGT	3 cut(s)	412, 873, 1101
Kpn2I	TCCGGA	3 cut(s)	385, 795, 978
Kzo9I	GATC	8 cut(s)	14, 335, 354, 382, 586, 930, 1021, 1220
LmnI	GCTCC	3 cut(s)	126, 379, 544
Lsp1109I	GCAGC	1 cut(s)	1032
LweI	GCATC	4 cut(s)	213, 379, 659, 722
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	3 cut(s)	412, 873, 1101
MaeIII	GTNAC	4 cut(s)	343, 362, 550, 867
MalI	GATC	8 cut(s)	16, 337, 356, 384, 588, 932, 1023, 1222
MboI	GATC	8 cut(s)	14, 335, 354, 382, 586, 930, 1021, 1220
MboII	GAAGA	3 cut(s)	777, 1136, 1193
MflI	RGATCY	4 cut(s)	14, 382, 586, 1220
MhlI	GDGCHC	3 cut(s)	499, 1101, 1247
MluCI	AATT	6 cut(s)	42, 100, 273, 279, 571, 1212
MlyI	GAGTC	4 cut(s)	101, 209, 1031, 1148
MmeI	TCCRAC	2 cut(s)	268, 566
MnlI	CCTC	8 cut(s)	156, 321, 455, 921, 941, 973, 1341, 1364
MroI	TCCGGA	3 cut(s)	385, 795, 978
MroXI	GAANNNNTTC	1 cut(s)	1185
MseI	TTAA	3 cut(s)	41, 350, 1104
MslI	CAYNNNNRTG	4 cut(s)	266, 415, 708, 876
MspI	CCGG	4 cut(s)	132, 386, 796, 979
MspR9I	CCNGG	2 cut(s)	133, 822
Mva1269I	GAATGC	2 cut(s)	623, 974
MvaI	CCWGG	1 cut(s)	822
MwoI	GCNNNNNNNGC	3 cut(s)	67, 545, 843
NciI	CCSGG	1 cut(s)	133
NcoI	CCATGG	2 cut(s)	430, 1366
NdeII	GATC	8 cut(s)	14, 335, 354, 382, 586, 930, 1021, 1220
NlaIV	GGNNCC	1 cut(s)	672
NmuCI	GTSAC	1 cut(s)	867
NspI	RCATGY	2 cut(s)	61, 539
OliI	CACNNNNGTG	2 cut(s)	415, 708
PagI	TCATGA	1 cut(s)	1308
PaqCI	CACCTGC	1 cut(s)	1279
PctI	GAATGC	2 cut(s)	623, 974
PdmI	GAANNNNTTC	1 cut(s)	1185
PfeI	GAWTC	4 cut(s)	406, 468, 699, 792
PkrI	GCNGC	1 cut(s)	1047
PleI	GAGTC	4 cut(s)	101, 209, 1031, 1148
PmaCI	CACGTG	1 cut(s)	874
PmlI	CACGTG	1 cut(s)	874
PpsI	GAGTC	4 cut(s)	101, 209, 1031, 1148
Ppu21I	YACGTR	2 cut(s)	413, 874
PsiI	TTATAA	1 cut(s)	803
Psp6I	CCWGG	1 cut(s)	820
PspCI	CACGTG	1 cut(s)	874
PspFI	CCCAGC	1 cut(s)	1230
PspGI	CCWGG	1 cut(s)	820
PspN4I	GGNNCC	1 cut(s)	672
PspPI	GGNCC	4 cut(s)	326, 670, 818, 1363
PsuI	RGATCY	4 cut(s)	14, 382, 586, 1220
RseI	CAYNNNNRTG	4 cut(s)	266, 415, 708, 876
SalI	GTCGAC	3 cut(s)	136, 531, 1262
SaqAI	TTAA	3 cut(s)	41, 350, 1104
SatI	GCNGC	1 cut(s)	1046
Sau3AI	GATC	8 cut(s)	14, 335, 354, 382, 586, 930, 1021, 1220
Sau96I	GGNCC	4 cut(s)	326, 670, 818, 1363
SchI	GAGTC	4 cut(s)	101, 209, 1031, 1148
ScrFI	CCNGG	2 cut(s)	133, 822
SduI	GDGCHC	3 cut(s)	499, 1101, 1247
SfaNI	GCATC	4 cut(s)	213, 379, 659, 722
SfcI	CTRYAG	1 cut(s)	1119
SinI	GGWCC	2 cut(s)	326, 1363
SmiMI	CAYNNNNRTG	4 cut(s)	266, 415, 708, 876
SmlI	CTYRAG	1 cut(s)	1246
SmoI	CTYRAG	1 cut(s)	1246
Sse9I	AATT	6 cut(s)	42, 100, 273, 279, 571, 1212
SsiI	CCGC	1 cut(s)	640
SspI	AATATT	2 cut(s)	808, 1028
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	131, 820
StyI	CCWWGG	2 cut(s)	430, 1366
TaaI	ACNGT	2 cut(s)	330, 635
TaiI	ACGT	3 cut(s)	415, 876, 1104
TaqI	TCGA	5 cut(s)	137, 315, 532, 1263, 1283
TaqII	GACCGA	1 cut(s)	489
TasI	AATT	6 cut(s)	42, 100, 273, 279, 571, 1212
TfiI	GAWTC	4 cut(s)	406, 468, 699, 792
Tru1I	TTAA	3 cut(s)	41, 350, 1104
Tru9I	TTAA	3 cut(s)	41, 350, 1104
TscAI	CASTG	2 cut(s)	214, 1153
TseFI	GTSAC	1 cut(s)	867
TseI	GCWGC	1 cut(s)	1045
Tsp45I	GTSAC	1 cut(s)	867
TspDTI	ATGAA	4 cut(s)	243, 1297, 1325, 1328
TspGWI	ACGGA	1 cut(s)	929
TspRI	CASTG	2 cut(s)	214, 1153
VneI	GTGCAC	1 cut(s)	1097
VpaK11BI	GGWCC	2 cut(s)	326, 1363
XapI	RAATTY	2 cut(s)	100, 571
XceI	RCATGY	2 cut(s)	61, 539
XmiI	GTMKAC	3 cut(s)	137, 532, 1263
XmnI	GAANNNNTTC	1 cut(s)	1185
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.