Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009481

Physical Location & Seq

Genomic Coordinates Forward (+)

40737368 .. 40738004

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0330200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGACAATTGAGGATCTTGAAAATGAAGCGACACTAATTGTGATGGGGAAAGCAGCTGAGCAACTCTTCGGCAACAGCTGTCAAGAATTAATGAACAGAAGACAATATCCAACAAGACAGACACTGCCAAAGGAAATCGAGGATACGATTGGCCAACATCACCTCTTTCAGATCGAGCCAAGGTCTAACAGCGAGCTTATTGTGAAGGCCATCTTTCCTGATCCAGAGGATCCTGTAGGAGTAGCTACCCCAGATCGTTCTACCTCAGAAAAAAAAAAGAGAACAGTAGAAACAAGCAAAAAAGCACTCTTCATTGGTGAACCAGAAAAGAAAAGCAAAAGGGAATCCCGGCATGAAAGAACTACATCACCATCACCGGGAACTGAAGAAGATCAGACAAAAAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

136

Amino Acids

15.48

Weight (kDa)

6.33

Isoelectric Point (pI)

70.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0009481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80170 AT1G80170
fragaria_vesca	FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200
malus_domestica	MD17G1207200.v1.1
prunus_persica	Prupe.3G081700_v2.0.a1
pyrus_communis	pycom17g20990
rosa_chinensis	RchiOBHm_Chr2g0136441
rosa_laevigata	RLG00000019531
rosa_multiflora	Rmu_sc0001998.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108290 Rroxscaffold_5G00349940
rosa_rugosa	Rorug02G0330200
rosa_samantha	Rh2AG381400 Rh2BG388100 Rh2CG367700 Rh2DG404500
rosa_wichuraiana	Rw2G031180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	21, 215, 224, 237
AcoI	YGGCCR	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	20
AluBI	AGCT	4 cut(s)	56, 78, 196, 245
AluI	AGCT	4 cut(s)	56, 78, 196, 245
AlwI	GGATC	4 cut(s)	21, 215, 224, 237
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	2 cut(s)	151, 207
ApeKI	GCWGC	1 cut(s)	53
AseI	ATTAAT	1 cut(s)	89
AsuC2I	CCSGG	2 cut(s)	349, 378
AsuHPI	GGTGA	4 cut(s)	152, 329, 360, 366
BalI	TGGCCA	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	3 cut(s)	37, 218, 379
BciVI	GTATCC	1 cut(s)	136
BcnI	CCSGG	2 cut(s)	349, 378
BfmI	CTRYAG	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	54
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	349, 378
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	349, 378
BpiI	GAAGAC	1 cut(s)	106
Bpu1102I	GCTNAGC	1 cut(s)	57
BpuMI	CCSGG	2 cut(s)	349, 378
BsaJI	CCNNGG	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	2 cut(s)	48, 279
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	2 cut(s)	153, 209
BsiSI	CCGG	2 cut(s)	349, 377
BslI	CCNNNNNNNGG	1 cut(s)	377
BsnI	GGCC	2 cut(s)	153, 209
Bsp143I	GATC	6 cut(s)	13, 171, 220, 229, 253, 391
Bsp1720I	GCTNAGC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	153, 209
BspCNI	CTCAG	2 cut(s)	49, 278
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	4 cut(s)	21, 215, 224, 237
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	6 cut(s)	13, 171, 220, 229, 253, 391
BssT1I	CCWWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	2 cut(s)	71, 314
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	57, 265
BstKTI	GATC	6 cut(s)	16, 174, 223, 232, 256, 394
BstMBI	GATC	6 cut(s)	13, 171, 220, 229, 253, 391
BstSCI	CCNGG	2 cut(s)	347, 376
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	2 cut(s)	13, 229
BstYI	RGATCY	2 cut(s)	13, 229
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	153, 209
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	124
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	7 cut(s)	56, 78, 153, 178, 196, 209, 245
CviKI_1	RGCY	7 cut(s)	56, 78, 153, 178, 196, 209, 245
DdeI	CTNAG	2 cut(s)	57, 265
DpnI	GATC	6 cut(s)	15, 173, 222, 231, 255, 393
DpnII	GATC	6 cut(s)	13, 171, 220, 229, 253, 391
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	2 cut(s)	71, 314
EarI	CTCTTC	2 cut(s)	71, 314
Eco130I	CCWWGG	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	1 cut(s)	356
FaiI	YATR	1 cut(s)	354
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	153, 209
HapII	CCGG	2 cut(s)	349, 377
Hin1II	CATG	1 cut(s)	356
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	2 cut(s)	349, 377
HphI	GGTGA	4 cut(s)	152, 329, 360, 366
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	3 cut(s)	171, 268, 396
Hpy188III	TCNNGA	4 cut(s)	17, 83, 218, 224
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	286
HpyF3I	CTNAG	2 cut(s)	57, 265
Hsp92II	CATG	1 cut(s)	356
Kzo9I	GATC	6 cut(s)	13, 171, 220, 229, 253, 391
LpnPI	CCDG	7 cut(s)	231, 237, 246, 264, 336, 362, 390
Lsp1109I	GCAGC	1 cut(s)	65
MalI	GATC	6 cut(s)	15, 173, 222, 231, 255, 393
MboI	GATC	6 cut(s)	13, 171, 220, 229, 253, 391
MboII	GAAGA	5 cut(s)	58, 111, 301, 398, 401
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	2 cut(s)	13, 229
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	3 cut(s)	6, 36, 86
MluNI	TGGCCA	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	5 cut(s)	4, 133, 173, 220, 274
Mox20I	TGGCCA	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	153
MspA1I	CMGCKG	2 cut(s)	56, 78
MspI	CCGG	2 cut(s)	349, 377
MspR9I	CCNGG	2 cut(s)	349, 378
MunI	CAATTG	1 cut(s)	6
NciI	CCSGG	2 cut(s)	349, 378
NdeII	GATC	6 cut(s)	13, 171, 220, 229, 253, 391
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	55
PshBI	ATTAAT	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	231
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	13, 229
PvuII	CAGCTG	2 cut(s)	56, 78
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	6 cut(s)	13, 171, 220, 229, 253, 391
ScrFI	CCNGG	2 cut(s)	349, 378
SetI	ASST	7 cut(s)	58, 80, 165, 185, 198, 247, 266
SfcI	CTRYAG	1 cut(s)	234
Sse9I	AATT	3 cut(s)	6, 36, 86
StyD4I	CCNGG	2 cut(s)	347, 376
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	138, 174
TasI	AATT	3 cut(s)	6, 36, 86
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	4 cut(s)	39, 107, 301, 369
TspRI	CASTG	1 cut(s)	129
VspI	ATTAAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.