Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001998.1

Orthogroup ID

OG0009481

Physical Location & Seq

Genomic Coordinates Forward (+)

14619 .. 18037

Gene Structure 3419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001998.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

atgaaaacccttcgattctactcatcttcttcttcttcttcttccactcgtttcattcttctccttcatatattctctctctttctgagctcaaatactactcctactaccgatagagagaaatttgactctctcttacggctcccccaatccaggtctgccagaacccgacatagatccaagagggttctctttgttggcgattttggtgccaaaggagatggcatcactgatgattctcaggctttcaaaaatgcttgggaggttgcttgttctattcccacacggacaagaattctaattccctccggaaggacttaccttatccatcctgttgatattgctggaccgtgtcgatcaaaggtgactttaatgatctctggtaccatcattgctcccatcaatcctgatgcttggattggtttgaatcgacgcaagtggctttatttccatggggtgaaccatctcaccattgaagggggaggaacagtcgatgggatgggacaggaatggtgggctcgttcttgtaagaccaactcaacaaatccatgtcgacatgctccaacggccattacattccataggtgcaagaatttgaaggtcaaaaatattatgatcgtcaatagtcaaaaaatgcacatggcattcaccaactgtatgcgggtattagcatcccatctccaagttattgcacctgccactagtcccaatactgatggaatccacattagtgtgtcaaagggtgttgaggtcaaggatagcataataagaacaggagatgactgcatttctatagttagcaattcttcacgcatccggatcgtgaatattgtctgcggccctggtcatggcataagcatcggaagcctgggaaaatcaaactcttggtcacatgtgcgtgatgtagtggttgatgcagcattcctctctaacactgagaatggagtcaggatcaaaacatggcagggaggtagtggttttgcctctaacattgcatttcggaatgtggtcatggacaacgtatcaaatccaattataattgatcaatattattgtgactcccagttgccatgtttaaatcagactttggcggtcaaagttgagaatatatcctttatacacattaaagggacttctgctacagacgaagcaatacgatttgcatgcagtgatgattctccatgtgaaggtttatatttagaagatgttcaacttctaccatccaatggtgaaataacaagatcattttgttgggcagctcaaggctcaagtttgggttcagttgacccacctgcatgcttttccgatagtgaagaattcattaaacaaaaagtcctcatacaccctgtaagtttggaatatggaggaaaggcaatcctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

460

Amino Acids

50.44

Weight (kDa)

8.96

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80170 AT1G80170
fragaria_vesca	FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200 FvH4_6g30200
malus_domestica	MD17G1207200.v1.1
prunus_persica	Prupe.3G081700_v2.0.a1
pyrus_communis	pycom17g20990
rosa_chinensis	RchiOBHm_Chr2g0136441
rosa_laevigata	RLG00000019531
rosa_multiflora	Rmu_sc0001998.1_g000004
rosa_roxburghii	Rroxscaffold_2G00108290 Rroxscaffold_5G00349940
rosa_rugosa	Rorug02G0330200
rosa_samantha	Rh2AG381400 Rh2BG388100 Rh2CG367700 Rh2DG404500
rosa_wichuraiana	Rw2G031180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1037
AarI	CACCTGC	2 cut(s)	703, 1300
Acc36I	ACCTGC	2 cut(s)	703, 1300
Acc65I	GGTACC	1 cut(s)	383
AccB1I	GGYRCC	2 cut(s)	209, 383
AccB7I	CCANNNNNTGG	1 cut(s)	1226
AccI	GTMKAC	1 cut(s)	553
AccIII	TCCGGA	2 cut(s)	308, 816
AciI	CCGC	3 cut(s)	661, 837, 1091
AclWI	GGATC	3 cut(s)	171, 827, 959
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	4 cut(s)	122, 294, 592, 1316
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	6 cut(s)	153, 312, 477, 848, 1187, 1226
AflIII	ACRYGT	1 cut(s)	892
AgsI	TTSAA	5 cut(s)	250, 427, 476, 598, 1211
AhlI	ACTAGT	1 cut(s)	701
AjnI	CCWGG	3 cut(s)	152, 841, 867
AleI	CACNNNNGTG	1 cut(s)	729
AluBI	AGCT	2 cut(s)	90, 1259
AluI	AGCT	2 cut(s)	90, 1259
Alw21I	GWGCWC	1 cut(s)	92
AlwI	GGATC	3 cut(s)	171, 827, 959
Aor13HI	TCCGGA	2 cut(s)	308, 816
AoxI	GGCC	2 cut(s)	567, 838
ApeKI	GCWGC	2 cut(s)	917, 1256
ApoI	RAATTY	4 cut(s)	122, 294, 592, 1316
ArsI	GACNNNNNNTTYG	2 cut(s)	872, 904
Asp700I	GAANNNNTTC	1 cut(s)	1206
Asp718I	GGTACC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	347, 839
AsuHPI	GGTGA	5 cut(s)	376, 460, 469, 640, 1241
AvaII	GGWCC	1 cut(s)	347
BanI	GGYRCC	2 cut(s)	209, 383
BanII	GRGCYC	2 cut(s)	92, 520
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	929, 1268
BceAI	ACGGC	2 cut(s)	155, 582
BcgI	CGANNNNNNTGC	8 cut(s)	191, 225, 802, 836, 841, 875, 1146, 1180
BciT130I	CCWGG	3 cut(s)	154, 843, 869
BclI	TGATCA	1 cut(s)	1042
BcuI	ACTAGT	1 cut(s)	701
BfaI	CTAG	1 cut(s)	702
BfmI	CTRYAG	3 cut(s)	792, 1140, 1379
BfuAI	ACCTGC	2 cut(s)	703, 1300
BisI	GCNGC	3 cut(s)	838, 918, 1257
BlsI	GCNGC	3 cut(s)	839, 919, 1258
Bme1390I	CCNGG	3 cut(s)	154, 843, 869
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	347, 839
BmiI	GGNNCC	3 cut(s)	143, 211, 385
BmrFI	CCNGG	3 cut(s)	154, 843, 869
BmrI	ACTGGG	1 cut(s)	1057
BmsI	GCATC	6 cut(s)	234, 400, 680, 822, 867, 904
BmuI	ACTGGG	1 cut(s)	1057
BpuEI	CTTGAG	2 cut(s)	1245, 1252
BsaJI	CCNNGG	3 cut(s)	451, 841, 868
BsaWI	WCCGGW	2 cut(s)	308, 816
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	6 cut(s)	153, 312, 477, 848, 1187, 1226
Bse1I	ACTGG	1 cut(s)	1063
Bse3DI	GCAATG	2 cut(s)	390, 990
BseAI	TCCGGA	2 cut(s)	308, 816
BseBI	CCWGG	3 cut(s)	154, 843, 869
BseDI	CCNNGG	3 cut(s)	451, 841, 868
BseGI	GGATG	5 cut(s)	328, 504, 671, 813, 1220
BseLI	CCNNNNNNNGG	6 cut(s)	153, 312, 477, 848, 1187, 1226
BseMI	GCAATG	2 cut(s)	390, 990
BseMII	CTCAG	3 cut(s)	77, 254, 927
BseNI	ACTGG	1 cut(s)	1063
BseXI	GCAGC	2 cut(s)	929, 1268
BshFI	GGCC	2 cut(s)	569, 840
BshNI	GGYRCC	2 cut(s)	209, 383
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	309, 817
BslFI	GGGAC	3 cut(s)	516, 690, 1144
BslI	CCNNNNNNNGG	6 cut(s)	153, 312, 477, 848, 1187, 1226
BsmFI	GGGAC	3 cut(s)	516, 690, 1144
BsmI	GAATGC	2 cut(s)	644, 920
BsnI	GGCC	2 cut(s)	569, 840
Bsp1286I	GDGCHC	2 cut(s)	92, 520
Bsp13I	TCCGGA	2 cut(s)	308, 816
Bsp143I	GATC	8 cut(s)	176, 356, 375, 615, 819, 951, 1042, 1241
Bsp19I	CCATGG	1 cut(s)	451
BspACI	CCGC	3 cut(s)	661, 837, 1091
BspANI	GGCC	2 cut(s)	569, 840
BspCNI	CTCAG	3 cut(s)	78, 253, 928
BspEI	TCCGGA	2 cut(s)	308, 816
BspLI	GGNNCC	3 cut(s)	143, 211, 385
BspMI	ACCTGC	2 cut(s)	703, 1300
BspPI	GGATC	3 cut(s)	171, 827, 959
BspT107I	GGYRCC	2 cut(s)	209, 383
BsrDI	GCAATG	2 cut(s)	390, 990
BsrI	ACTGG	1 cut(s)	1063
BssECI	CCNNGG	3 cut(s)	451, 841, 868
BssMI	GATC	8 cut(s)	176, 356, 375, 615, 819, 951, 1042, 1241
BssT1I	CCWWGG	1 cut(s)	451
Bst2UI	CCWGG	3 cut(s)	154, 843, 869
Bst4CI	ACNGT	3 cut(s)	351, 490, 656
BstC8I	GCNNGC	2 cut(s)	1165, 1297
BstDEI	CTNAG	3 cut(s)	86, 240, 936
BstDSI	CCRYGG	1 cut(s)	451
BstENI	CCTNNNNNAGG	1 cut(s)	310
BstF5I	GGATG	5 cut(s)	328, 504, 671, 813, 1220
BstKTI	GATC	8 cut(s)	179, 359, 378, 618, 822, 954, 1045, 1244
BstMBI	GATC	8 cut(s)	176, 356, 375, 615, 819, 951, 1042, 1241
BstMWI	GCNNNNNNNGC	2 cut(s)	566, 864
BstNI	CCWGG	3 cut(s)	154, 843, 869
BstNSI	RCATGY	4 cut(s)	560, 896, 1167, 1299
BstSCI	CCNGG	3 cut(s)	152, 841, 867
BstSFI	CTRYAG	3 cut(s)	792, 1140, 1379
BstV1I	GCAGC	2 cut(s)	929, 1268
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	569, 840
BtgI	CCRYGG	1 cut(s)	451
BtsCI	GGATG	5 cut(s)	328, 504, 671, 813, 1220
BtsI	GCAGTG	1 cut(s)	1174
BtsIMutI	CAGTG	3 cut(s)	228, 933, 1174
BveI	ACCTGC	2 cut(s)	703, 1300
Cac8I	GCNNGC	2 cut(s)	1165, 1297
Cfr13I	GGNCC	2 cut(s)	347, 839
CseI	GACGC	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	384
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	3 cut(s)	86, 240, 936
DpnI	GATC	8 cut(s)	178, 358, 377, 617, 821, 953, 1044, 1243
DpnII	GATC	8 cut(s)	176, 356, 375, 615, 819, 951, 1042, 1241
DraI	TTTAAA	1 cut(s)	1077
EaeI	YGGCCR	1 cut(s)	567
Ecl136II	GAGCTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	451
Eco24I	GRGCYC	2 cut(s)	92, 520
Eco47I	GGWCC	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	90
EcoNI	CCTNNNNNAGG	1 cut(s)	310
EcoRI	GAATTC	2 cut(s)	294, 1316
EcoRII	CCWGG	3 cut(s)	152, 841, 867
EcoT14I	CCWWGG	1 cut(s)	451
EcoT38I	GRGCYC	2 cut(s)	92, 520
ErhI	CCWWGG	1 cut(s)	451
FaqI	GGGAC	3 cut(s)	516, 690, 1144
FauI	CCCGC	1 cut(s)	654
FbaI	TGATCA	1 cut(s)	1042
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	838, 918, 1257
FokI	GGATG	5 cut(s)	315, 511, 658, 800, 1207
FriOI	GRGCYC	2 cut(s)	92, 520
Fsp4HI	GCNGC	3 cut(s)	838, 918, 1257
FspBI	CTAG	1 cut(s)	702
GluI	GCNGC	3 cut(s)	838, 918, 1257
HaeIII	GGCC	2 cut(s)	569, 840
HapII	CCGG	2 cut(s)	309, 817
HgaI	GACGC	1 cut(s)	441
HincII	GTYRAC	2 cut(s)	554, 1285
HindII	GTYRAC	2 cut(s)	554, 1285
HinfI	GANTC	8 cut(s)	15, 128, 236, 427, 720, 945, 1058, 1175
HpaII	CCGG	2 cut(s)	309, 817
HphI	GGTGA	5 cut(s)	376, 460, 469, 640, 1241
Hpy166II	GTNNAC	3 cut(s)	460, 554, 1285
Hpy188I	TCNGA	5 cut(s)	87, 863, 1002, 1083, 1306
Hpy188III	TCNNGA	5 cut(s)	309, 407, 817, 823, 949
Hpy8I	GTNNAC	3 cut(s)	460, 554, 1285
Hpy99I	CGWCG	1 cut(s)	435
HpyAV	CCTTC	6 cut(s)	20, 74, 306, 470, 592, 1181
HpyCH4III	ACNGT	3 cut(s)	351, 490, 656
HpyCH4IV	ACGT	1 cut(s)	1020
HpyCH4V	TGCA	9 cut(s)	588, 637, 692, 786, 917, 995, 1163, 1167, 1295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	566, 864
HpyF3I	CTNAG	3 cut(s)	86, 240, 936
HpySE526I	ACGT	1 cut(s)	1020
Kpn2I	TCCGGA	2 cut(s)	308, 816
KpnI	GGTACC	1 cut(s)	387
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	8 cut(s)	176, 356, 375, 615, 819, 951, 1042, 1241
LmnI	GCTCC	3 cut(s)	147, 400, 565
Lsp1109I	GCAGC	2 cut(s)	929, 1268
LweI	GCATC	6 cut(s)	234, 400, 680, 822, 867, 904
MaeI	CTAG	1 cut(s)	702
MaeII	ACGT	1 cut(s)	1020
MaeIII	GTNAC	3 cut(s)	364, 888, 1055
MalI	GATC	8 cut(s)	178, 358, 377, 617, 821, 953, 1044, 1243
MboI	GATC	8 cut(s)	176, 356, 375, 615, 819, 951, 1042, 1241
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	2 cut(s)	92, 520
MluCI	AATT	8 cut(s)	122, 294, 300, 592, 802, 1032, 1038, 1316
MlyI	GAGTC	3 cut(s)	122, 954, 1052
MmeI	TCCRAC	1 cut(s)	587
MroI	TCCGGA	2 cut(s)	308, 816
MroXI	GAANNNNTTC	1 cut(s)	1206
MseI	TTAA	4 cut(s)	371, 1076, 1125, 1323
MslI	CAYNNNNRTG	4 cut(s)	729, 731, 897, 1294
MspI	CCGG	2 cut(s)	309, 817
MspR9I	CCNGG	3 cut(s)	154, 843, 869
Mva1269I	GAATGC	2 cut(s)	644, 920
MvaI	CCWGG	3 cut(s)	154, 843, 869
MwoI	GCNNNNNNNGC	2 cut(s)	566, 864
NcoI	CCATGG	1 cut(s)	451
NdeII	GATC	8 cut(s)	176, 356, 375, 615, 819, 951, 1042, 1241
NlaIV	GGNNCC	3 cut(s)	143, 211, 385
NmuCI	GTSAC	3 cut(s)	364, 888, 1055
NspI	RCATGY	4 cut(s)	560, 896, 1167, 1299
OliI	CACNNNNGTG	1 cut(s)	729
PaeI	GCATGC	2 cut(s)	1167, 1299
PaqCI	CACCTGC	2 cut(s)	703, 1300
PciI	ACATGT	1 cut(s)	892
PctI	GAATGC	2 cut(s)	644, 920
PdmI	GAANNNNTTC	1 cut(s)	1206
PfeI	GAWTC	5 cut(s)	15, 236, 427, 720, 1175
PflFI	GACNNNGTC	1 cut(s)	351
PflMI	CCANNNNNTGG	1 cut(s)	1226
PkrI	GCNGC	3 cut(s)	839, 919, 1258
PleI	GAGTC	3 cut(s)	122, 953, 1052
PpsI	GAGTC	3 cut(s)	122, 953, 1052
PscI	ACATGT	1 cut(s)	892
PsiI	TTATAA	1 cut(s)	1037
Psp124BI	GAGCTC	1 cut(s)	92
Psp6I	CCWGG	3 cut(s)	152, 841, 867
PspGI	CCWGG	3 cut(s)	152, 841, 867
PspN4I	GGNNCC	3 cut(s)	143, 211, 385
PspPI	GGNCC	2 cut(s)	347, 839
PsuI	RGATCY	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	351
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	4 cut(s)	729, 731, 897, 1294
SacI	GAGCTC	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	552
SaqAI	TTAA	4 cut(s)	371, 1076, 1125, 1323
SatI	GCNGC	3 cut(s)	838, 918, 1257
Sau3AI	GATC	8 cut(s)	176, 356, 375, 615, 819, 951, 1042, 1241
Sau96I	GGNCC	2 cut(s)	347, 839
SchI	GAGTC	3 cut(s)	122, 954, 1052
ScrFI	CCNGG	3 cut(s)	154, 843, 869
SduI	GDGCHC	2 cut(s)	92, 520
SfaNI	GCATC	6 cut(s)	234, 400, 680, 822, 867, 904
SfcI	CTRYAG	3 cut(s)	792, 1140, 1379
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	4 cut(s)	729, 731, 897, 1294
SmlI	CTYRAG	2 cut(s)	1260, 1267
SmoI	CTYRAG	2 cut(s)	1260, 1267
SpeI	ACTAGT	1 cut(s)	701
SphI	GCATGC	2 cut(s)	1167, 1299
Sse9I	AATT	8 cut(s)	122, 294, 300, 592, 802, 1032, 1038, 1316
SsiI	CCGC	3 cut(s)	661, 837, 1091
SspI	AATATT	3 cut(s)	610, 829, 1049
SspMI	CTAG	1 cut(s)	702
SstI	GAGCTC	1 cut(s)	92
StyD4I	CCNGG	3 cut(s)	152, 841, 867
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	3 cut(s)	351, 490, 656
TaiI	ACGT	1 cut(s)	1023
TaqI	TCGA	5 cut(s)	13, 355, 430, 492, 553
TasI	AATT	8 cut(s)	122, 294, 300, 592, 802, 1032, 1038, 1316
TauI	GCSGC	1 cut(s)	840
TfiI	GAWTC	5 cut(s)	15, 236, 427, 720, 1175
Tru1I	TTAA	4 cut(s)	371, 1076, 1125, 1323
Tru9I	TTAA	4 cut(s)	371, 1076, 1125, 1323
TscAI	CASTG	3 cut(s)	235, 940, 1174
TseFI	GTSAC	3 cut(s)	364, 888, 1055
TseI	GCWGC	2 cut(s)	917, 1256
Tsp45I	GTSAC	3 cut(s)	364, 888, 1055
TspDTI	ATGAA	4 cut(s)	17, 43, 56, 1309
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	3 cut(s)	235, 940, 1174
Tth111I	GACNNNGTC	1 cut(s)	351
Van91I	CCANNNNNTGG	1 cut(s)	1226
VpaK11BI	GGWCC	1 cut(s)	347
XagI	CCTNNNNNAGG	1 cut(s)	310
XapI	RAATTY	4 cut(s)	122, 294, 592, 1316
XceI	RCATGY	4 cut(s)	560, 896, 1167, 1299
XmiI	GTMKAC	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	1206
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.